BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17730.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350882 jgi|Araly1|350882|fgenesh1_pg.C_scaffold_6001475 784 0.0
> Ahg350882 jgi|Araly1|350882|fgenesh1_pg.C_scaffold_6001475
Length=618
Score = 784 bits (424), Expect = 0.0
Identities = 499/536 (93%), Gaps = 2/536 (0%)
Strand=Plus/Plus
Query 1 ATGTTTTCTCTTAGAAATCTTCCTTCGCTTGCACCGTTTGTCTCAGCCTACGCATCATTG 60
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTTTTCTCTTAGAAATCTTCCTTCCCTTGCACCATTTGTCTCAGCCTACGCATCATTG 60
Query 61 ACGGGATACGTCATGATGATCAAACCATTTCTTGAGATGACAATTCCACCTCCGTTACAA 120
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ACGGGATACATCATGATGATCAAACCATTTATTGAGATGACAATTCCACCTCCGTTACAA 120
Query 121 AACTACATGATCTCTTATCTCAATTCTTTCTTGCACTCTACTCCATCGACTCTCACGCTC 180
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 AACTACATCATCTCTTATCTCAATTCTTTCTTGCACTCTAGTCCATCGACTCTCACGCTC 180
Query 181 ATCATCGATGACCATATCAAGAATGGGATGTATAACGAGCTCTACGGGGCTGCTCAGGTT 240
|||||||| ||||| ||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 181 ATCATCGACGACCAGATCAAGAATGGGATGAACAACGAGCTCTATGGGGCTGCTCAGGTT 240
Query 241 TATATTTCTACCAAGGTCAACCACAACGCGGAAAGGCTAAGGATCTCTAGAGACCGCAGT 300
||||| || |||||| ||||| |||||||| |||||| ||||||| |||||||||||||
Sbjct 241 TATATCTCCACCAAGATCAACTGCAACGCGGCAAGGCTTAGGATCTTTAGAGACCGCAGT 300
Query 301 GAGAAAAACGTCAATATACACTTCAGCGTAGGAGAGGTTGTCTCGGATATCTACCAAGGC 360
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 301 GAGAAAAACGTCAATTTACACCTCAGCGTAGGAGAGGTTGTCTCGGATGTCTACCAAGGC 360
Query 361 ATTGAGGTCAAGTGGCGGTTTTGTGTTGACAGCAATAAGAGCAATATGGTTCATTATTTT 420
|||||| |||||||||| ||||||||||| ||||| |||| ||||||||||||| |||||
Sbjct 361 ATTGAGCTCAAGTGGCGTTTTTGTGTTGAAAGCAAGAAGACCAATATGGTTCATGATTTT 420
Query 421 GGGGAACATTTTAAGCTAAACCCCGATCGGGAGTGCGTT-GAGCTTAGCTTTGAAAAGAA 479
||||||||||||||||||||| |||||||||||| || ||||||||||||||||| ||
Sbjct 421 GGGGAACATTTTAAGCTAAACTCCGATCGGGAGTAT-TTCGAGCTTAGCTTTGAAAACAA 479
Query 480 ACACACAGAGTTGGTCTTGAATTCTTATATACCTTACGTGGAGAGCAAGGCAAAGG 535
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 ACACAGAGACTTGGTCTTGAATTCTTATATACCTTACGTGGAAAGCAAGGCAAAGG 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5