BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G17760.1

Length=1809
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg350885 jgi|Araly1|350885|fgenesh1_pg.C_scaffold_6001478           857    0.0  


> Ahg350885 jgi|Araly1|350885|fgenesh1_pg.C_scaffold_6001478
Length=612

 Score =  857 bits (464),  Expect = 0.0
 Identities = 525/555 (95%), Gaps = 2/555 (0%)
 Strand=Plus/Plus

Query  179  ATGGCGGGTTACATGATGATGATAAGATCAATGGCTCACGAGCTAATCCCAGCTCCCCTC  238
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||
Sbjct  1    ATGGCGGGTTACATGATGATGATACGATCAATGGCTCACGAGCTAATCCCAGCTCCGATC  60

Query  239  CAAGATTTCATCTACAGGACTCTCCGGTCTCTCTTCTTCCGTTCTTCTTCCTCCACTTTG  298
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   CAAGATTTCATCTACAGGACTCTCCGGTCTCTCTTCTTCCGTGCTTCTTCCTCCACTTTG  120

Query  299  ACGCTAACCATCGATGACGACAACATGGGTATGAACAACGAGATCTACCGAGCTGCTCAG  358
            || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  ACTCTAACCATCGACGACGACAACATGGGCATGAACAACGAGATCTACCGAGCTGCTCAG  180

Query  359  ACTTATCTCTCCACCAAGATCAGTCCTGATGCAGTCAGGCTCAGAATAAGTAAAGGCCAT  418
            ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || 
Sbjct  181  ACTTATCTCTCCACCAAGATCAGTCCTGACGCAGTCAGGCTCAGAATCAGTAAAGGTCAC  240

Query  419  AAGGATAAACATGTCAA-CTTGTATCTCAGCGACGGAGAAATCGTCAACGATGTGTACGA  477
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAGGATAAACATGTCAATCT-GTATCTCAGCGACGGAGAAATCGTCAACGATGTGTACGA  299

Query  478  AGATGTGCAGCTAGTATGGAGGTTTGTTACTGACGGTggagacaagaaaggaggcggcgg  537
            |||||| ||||||||||||||||||||||| |||||||||||||||||| | || |||||
Sbjct  300  AGATGTCCAGCTAGTATGGAGGTTTGTTACAGACGGTGGAGACAAGAAAAGCGGTGGCGG  359

Query  538  aggagtaggaggaagaggaggaggaggaggaagaagaggTGGTATGGACGATGACGGTAA  597
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  360  AGGAGTAGGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGCGGTATGGACGATGACGGTAG  419

Query  598  AAGCGAGTACTTCGAGCTGAGTTTCGACAAGAAACATAAAGATTTGATATTGAACTCTTA  657
            ||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||| ||
Sbjct  420  AAGCGAGTATTTCGAGCTGAGTTTCGACAAGAAGCATAAAGATTTGATCTTGAGCTCATA  479

Query  658  TGTGCCTTACATCGAGAGTAAAGCTAAAGAGATAAGAGACGAGAGAAGAATCTTGATGCT  717
              | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct  480  CATTCCTTACATCGAGAGTAAAGCTAAAGAGATTAGAGACGAGAGGAGAATCTTGATGCT  539

Query  718  GCATTCTCTCAACAG  732
            |||||||||||||||
Sbjct  540  GCATTCTCTCAACAG  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67914906835


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5