BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17770.1
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941293 jgi|Araly1|941293|scaffold_601837.1 1419 0.0
> Ahg941293 jgi|Araly1|941293|scaffold_601837.1
Length=886
Score = 1419 bits (768), Expect = 0.0
Identities = 848/887 (96%), Gaps = 3/887 (0%)
Strand=Plus/Plus
Query 192 TTTCATTTGGGTTAAGAGAAGCCATGGATACCGAGTTTCTCCGAACCCTAGATCGTCAGA 251
||||||||||||| | | |||||||||||||||||||||||||||||||||||| || |
Sbjct 1 TTTCATTTGGGTT-A-CG-AGCCATGGATACCGAGTTTCTCCGAACCCTAGATCGCCAAA 57
Query 252 TTCTTTTGGGTGTCTTCGTTGCTTTCGTCGCCGTTGGTGCTGGTGCTGCTTATTTTCTTA 311
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 58 TTCTTTTGGGTGTCTTCGTCGCTTTCGTCGCCGCCGGTGCTGGTGCTGCTTATTTTCTTA 117
Query 312 CATCCTCCAAGAAACGCAGAGTGTGTTTGGATCCAGAGAATTTCAAGGAGTTCAAGCTTG 371
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 118 CATCCTCCAAGAAACGCAGAGTGTGCTTGGATCCAGAGAATTTCAAGGAGTTCAAGCTTG 177
Query 372 TTAAGAGACATCAGCTTAGTCACAATGTGGCCAAGTTCGTTTTTGAACTCCCAACTTCTA 431
|||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 TTAAGAAACATCAACTTAGTCACAATGTGGCCAAGTTCATTTTTGAACTCCCAACTTCTA 237
Query 432 CTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGGGGAAAGGATGGTCAAG 491
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGGGGAAAGGATGGTCAAG 297
Query 492 GAGAGGATGTTATTAAGCCATACACCCCGACTACGTTAGACTCTGACGTTGGACGTTTCG 551
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 298 GAGAGGATGTTATTAAGCCATACACCCCGACTACCTTAGACTCAGACGTTGGACGTTTCG 357
Query 552 AACTTGTCATTAAGATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTG 611
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 AACTTGTCATTAAGATGTATCCGCAAGGAAGGATGTCTCATCATTTCAGGGAGATGCGTG 417
Query 612 TTGGAGACCATCTTGCCGTAAAGGGACCAAAGGGTAGGTTCAAGTATCAACCAGGTCAGT 671
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 418 TTGGAGACCATCTTGCCGTAAAGGGGCCTAAGGGTAGGTTCAAGTATCAACCAGGTCAGT 477
Query 672 TTAGGGCATTTGGAATGCTTGCTGGAGGTTCAGGCATCACTCCCATGTTCCAAGTGGCCA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 478 TTAGGGCATTTGGAATGCTTGCTGGAGGTTCAGGCATCACTCCCATGTTCCAAGTCGCTA 537
Query 732 GAGCAATTCTAGAAAACCCAACAGACAAGACAAAGGTGCATCTCATTTACGCCAACGTCA 791
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 538 GAGCAATTCTAGAAAACCCAACAGATAAGACAAAGGTGCACCTCATTTACGCCAATGTCA 597
Query 792 CATACGACGACATTCTCTTGAAGGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAAC 851
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 598 CATACGAAGACATTCTCTTGAAGGAAGAATTGGAGGGTCTTACCGCCAATTACCCAGATC 657
Query 852 AATTTAAAATCTTCTATGTTTTGAACCAGCCTCCGGAAGTATGGGATGGTGGTGTTGGAT 911
|||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 AATTCAAAATCTACTATGTTTTGAACCAGCCTCCGGAAATATGGGATGGTGGTGTTGGAT 717
Query 912 TTGTATCAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGATCC 971
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 718 TTGTATCAAAGGAAATGATTCAGAGTCATTGCCCTGCACCGGCATCCGATATTCAGATCC 777
Query 972 TAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTTGAAGCTCTGGGAT 1031
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TAAGATGCGGGCCACCGCCGATGAACAAGGCCATGGCTGCAAACCTTGAAGCTCTGGGAT 837
Query 1032 ACTCTCCGGAGATGCAATTCCAGTTCTGATCTGAATATCTTCTTTTG 1078
||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 838 ACTCTCCGGAGATGCAATTTCAGTTCTGATCTGAATCTCTTCTTTTG 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50589110859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5