BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17780.2
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326204 jgi|Araly1|326204|fgenesh1_pm.C_scaffold_6001424 1711 0.0
> Ahg326204 jgi|Araly1|326204|fgenesh1_pm.C_scaffold_6001424
Length=1275
Score = 1711 bits (926), Expect = 0.0
Identities = 1155/1264 (91%), Gaps = 21/1264 (2%)
Strand=Plus/Plus
Query 75 ATGTCTTTCCCGAGAAAATTCGGGACAGCGATTCACGCCGCTCTATCTTTTATCGTCTTC 134
|||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1 ATGTCTTTCCAGAGAAAATCCGGGACAGCGATTCACGTCGCTCTATCTTCAATCGTATTC 60
Query 135 TTTTTCTTGGACCTCCTCGACGCGATTCTCTGTGTCGTTTACGAGTTCGTCGATGAGATT 194
|| |||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 61 TTCTTCTTGGACCTCATTGACGCGATTCTCTGCGTCGTTTACGAGTTCGTCGACGAGATT 120
Query 195 TTGGAA-GAAAACTCAACAGGTTGTTACTGCACGGC-G--GCGGCTCCTCAAAGTCAAAC 250
|||||| ||||| |||| || |||||||||||||| | |||||| |||||| ||||||
Sbjct 121 TTGGAAGGAAAA-TCAAGAGACTGTTACTGCACGGCGGCAGCGGCTTCTCAAATTCAAAC 179
Query 251 CACC-GACGAAAATGAGTTGTCGTCGGAGACTTTATTCGGGAGGAGAAACATTTTCCGGG 309
|||| | |||||||| | | ||| |||||||||||| |||||||||||||||||| ||
Sbjct 180 CACCTG-TGAAAATGA-AT-T-GTCAGAGACTTTATTCCGGAGGAGAAACATTTTCCAGG 235
Query 310 GAATGTGGTTTCTGGGATTCGCGAGAGAATTCAAATCCAAGCTTTC-CCGGAAACTGAGA 368
||||||||||||||||||||| ||| ||||||||||||||||||| | ||||| ||| |
Sbjct 236 AAATGTGGTTTCTGGGATTCGCTAGAAAATTCAAATCCAAGCTTTCTCGGGAAA-TGA-A 293
Query 369 AA-ATCTAAGATTCATCAAGAGTCAGTGAATCGATGGTCAGATTGTGGATGCAAATCTTG 427
|| ||| ||||||| | ||||| |||||| |||||||||| ||||||||| |||||||
Sbjct 294 AATTTCTGAGATTCA-C--GAGTCGGTGAATAGATGGTCAGACTGTGGATGCCAATCTTG 350
Query 428 CAAGTCATGGACTAAGAACGAAGATGGGAATCTTCACGTCGTGGTCAAAGATTCTACTTC 487
||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CAATTCGTGGACGAAGAACAAAGATGGGAATCTTCACGTCGTGGTCAAAGATTCTACTTC 410
Query 488 TCGAGAAACAGAGTACTCTGTTCAAGAACCGTCCGAGAATGTAATATTCATACACGGTTT 547
|| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 411 TCCAGAAACAGAGTACTCTGTTCAAGAACCGTCTGAGAATGTAATATTTATACATGGTTT 470
Query 548 TATGGGGTCATCACATTTTTGGACAGAAACTGTATTTGAACACATTCAA-AAAGATGATT 606
|||||| ||||| |||||||||||||| ||||| ||||||| |||| || ||||||||||
Sbjct 471 TATGGGTTCATCGCATTTTTGGACAGAGACTGTGTTTGAACTCATT-AAGAAAGATGATT 529
Query 607 ATAGGCTCCTCGCGATCGATCTTTTGGGATTCGGGGAGAGTCCTAAGCCAAGGGATAGTC 666
|||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 530 ATAGGCTCTTCGCTATCGATCTTTTGGGATTCGGGGATAGTCCTAAGCCAAGAGATAGTT 589
Query 667 TCTATACATTGAAAGATCATGTGGATACGATAGAGAGATCTGTCATTAAGCCATACCAAT 726
|||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 590 TCTATACATTGAGAGATCATGTGGAGACGATAGAGAGATCTGTCATTAAGCCGTGTCAAT 649
Query 727 TAGATTCTTTTCATGTGGTTGCACATTCAATGGGTTGCTTAATTGCTCTTGCTTTGGCTG 786
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 650 TAGATTCATTTCATGTAGTTGCACATTCGATGGGTTGCTTAATTGCTCTTGCTTTGGCTG 709
Query 787 CTAAACATTCCAACATTGTTAAATCCGTTACTCTTGTTGCACCGCCTTATTTTCCTTCAT 846
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 710 CTAAACACTCCAACATTGTTAAATCCGTCACTCTTGTTGCACCGCCTTATTTTCCTTCAT 769
Query 847 CGGTAGAAGGATCGGTCTTGAACCGAATCGCTAGAAAGCGGTTGTGGCCACCGCTTGCGT 906
| || |||||||| |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 770 CAGTTGAAGGATCAGTCTTGAATCGAATCGCTAAAAAGCGGTTGTGGCCGCCGCTTGCGT 829
Query 907 TTGGGACAGCGGTGATGTCTTGGTATGAACATATTGGTAGATGCGTATGTTTCATAATCT 966
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TTGGAACCGCGGTGATGTCTTGGTATGAACATATTGGTAGATGCGTATGTTTCATAATCT 889
Query 967 GCAAGCATCATAAGATATGGGAGTGGCTAATCAAGCTATGTATAGGTAAAAGGGAGATTC 1026
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 890 GCAAGCATCACAAGATATGGGAGTGGCTAATCAAGCTATGTATGGGTAAAAGGGAGATTC 949
Query 1027 ATTGGAAGATCAAGGACATAACAAGGCACACACATCACTCTGCATGGCATAGTATGCACA 1086
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CTTGGAAGATAAAAGACATAACAAGGCACACACATCACTCTGCATGGCATAGTATGCACA 1009
Query 1087 ATGTGATATGTGGTGGCTCCAAAGTCGCTGATGAACATCTTGAAACCCTAATAAAGTCTG 1146
||||||||||||||||||||||| | |||||||||||||| || ||||||||||| ||||
Sbjct 1010 ATGTGATATGTGGTGGCTCCAAATTTGCTGATGAACATCTCGAGACCCTAATAAATTCTG 1069
Query 1147 GCGTTAAGATTCACTTGATGCAAGGCGACTGTGACCA-AATCGTTCCTTCACATTGCTCT 1205
||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct 1070 GCGTTAAGATTCACTTGATGCAAGGCGACCGCGAT-AGAATCGTTCCTTCACATTGCTCT 1128
Query 1206 GGCAACATGAAGAGGACTTTTCCGGCGGTGGAAGTTGATATCATTACTGGTGCTGATCAT 1265
||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1129 AGCAACATGAAGAGGAGATTTCCGTCGGTGGAAGTTGATATCATCGCTGGTGCTGATCAT 1188
Query 1266 GATAGTATGATAAGCGGAAGAGGAGAAGAGTTTGCTGAGAAATTGGAGAGCATTTGGTGT 1325
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1189 GATAGTATGATAAGTGGAAGAGGAGAAGAGTTTGTTGAGAAATTGGAGAGCATTTGGTGT 1248
Query 1326 TCAT 1329
||||
Sbjct 1249 TCAT 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55383216230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5