BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17790.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893696 jgi|Araly1|893696|Al_scaffold_0006_1692 3299 0.0
> Ahg893696 jgi|Araly1|893696|Al_scaffold_0006_1692
Length=2280
Score = 3299 bits (1786), Expect = 0.0
Identities = 2127/2291 (93%), Gaps = 25/2291 (1%)
Strand=Plus/Plus
Query 48 ATGAACAACTCCACCAGActcatctccctcttctctcctcatcctcctcctctctttcta 107
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACAACTCCACCAGACTCATCTCCCTCTTCTCTCCTCATCCTCCTCCTCTCTTTCTC 60
Query 108 ctccgtggtc-tctACATCAGCCGCATAGCCAATCTCCGCCGTTTCCACCGCCGTGCGTT 166
|||||||| | ||||||||| ||||||| ||||||||||||||||||||||||| |||||
Sbjct 61 CTCCGTGG-CATCTACATCACCCGCATAACCAATCTCCGCCGTTTCCACCGCCGGGCGTT 119
Query 167 TCCTCCTTCGTCCGTTGCCTCAACCAATCTATGTTCTTTCCGTCCACTCGTGTCATTGCC 226
| ||||||| ||||||| ||| | ||||| |||||||| |||||| ||||||| |||||
Sbjct 120 TACTCCTTCCTCCGTTGGCTCCAGCAATCGATGTTCTTCCCGTCCTTTCGTGTCTTTGCC 179
Query 227 GCCGCTTATCCCCACGTTTCCTATAGGACGATTCTACAATCACCAAGTCCGTGTCTCCGC 286
|||||||||||||||||||| || ||||| ||||||| ||| ||| |||||||||||||
Sbjct 180 ACCGCTTATCCCCACGTTTCCCATTGGACGGTTCTACACTCAACAATTCCGTGTCTCCGC 239
Query 287 CGCAGATTTTGTTCCTTCTTATCACAACCAGCAGCTACCTGAATGGACAGAGCTACTCCA 346
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 240 CGCAGATTTTGTTCCTTCTTATCACCACCACCAGCTACCTGAATGGACAGAGCTACTCCA 299
Query 347 ATCTCTCT-CCAAAGCTGGTTACTTCTCAGATTCCGGTTCGATTTCTGGTTTAGAAAGTG 405
|||||| | ||||| ||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct 300 ATCTCTTTCCCAAA-CTGGTTACTTCTCAGATTCCGGTTCAATTTCCGGTTCAGAAAGTG 358
Query 406 AATTCTTTCCCGGTTTTCCTGATGAACTTCTCCGTCCAGCTCTTGCTTGCTTAGCTCTAG 465
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 359 AATTCTTTCCCGGTTATCCTGATGAACTTCTCCGTCCAGCTCTTGCTTGCCTATCTCTAG 418
Query 466 CTCGTGAACGACCAGAACTGCTTGAAATGCTTTCGAGGAGAGACGTTGAAGTGCTGGTGG 525
||||||| ||||||||| | |||||||||||||||| |||||||||||||||| ||||||
Sbjct 419 CTCGTGATCGACCAGAATTACTTGAAATGCTTTCGAAGAGAGACGTTGAAGTGGTGGTGG 478
Query 526 AGAATGGAAAGCCATTTTTATTCAAGACAGGTCCAGATTCACTTAAAAGGA-TGAGCCTT 584
||||||| ||||||||||| || | | | ||||||||||||||||||| || ||||||||
Sbjct 479 AGAATGGGAAGCCATTTTTGTTTAGGGCTGGTCCAGATTCACTTAAAA-GATTGAGCCTT 537
Query 585 TACCTAAGAAGTGGTCTTCAGGGCATTGGTAAGTTGATGGATATGGAGAAGGCGAGTACA 644
||| |||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 538 TACTTAAGAAGTGGTCGTCAGGGTATTGGTAAGATGATGGACATGGAGAAGGCGAGTACA 597
Query 645 GTTGATTTGATGAGGCTTATTTTGAGTTATGTTGTGGATGTTGCTTCTTCTGAGGAGAGC 704
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 GTTGATTTGATGAGGCTTCTTTTGAGTTATGTTGTTGATGTTGCTTCTTCTGAGGAGAGC 657
Query 705 AAACAACATAACAAAGAGATTATGGAGTCATCGGTTCG-AAGCCTCTTGAGTCAGATAGC 763
||||| |||||| ||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 658 AAACACCATAACCAAGAGATTATGGAGTCATCGGTTCGTAA-CCTCTTGAGTCAGATAGC 716
Query 764 GAAGATGAGCTTGCGTCCTCCTGAGTCGAATGTTCATGACACGATGCAAAATCAGTACTC 823
|||||||||||| ||| || ||||| |||||||||||| ||| ||||||||||||| |||
Sbjct 717 GAAGATGAGCTTCCGTACTACTGAGCCGAATGTTCATGGCACTATGCAAAATCAGTTCTC 776
Query 824 AGATAGAGATGGACAAGGAGTCAGGTCTTTTCAGAATAACGTTGAGATGAAACGTGGTGA 883
||||||||||||||||| |||| ||||||||||||| ||| |||||||||||||||||||
Sbjct 777 AGATAGAGATGGACAAGCAGTCGGGTCTTTTCAGAAGAACATTGAGATGAAACGTGGTGA 836
Query 884 CTGGATTTGCTCGAGGTGCAGTGGCATGAACTTTGCGAGAAATGTCAAATGCTTCCAGTG 943
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTGGATTTGCTTGAGGTGCAGTGGCATGAACTTTGCGAGAAATGTCAAATGCTTCCAGTG 896
Query 944 TGATGAAGCAAGACCAAAGAGACAGCTTACTGGTAGTGAATGGGAGTGTCCTCAATGTGA 1003
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGATGAAGCAAGACCGAAGAGACAGCTTACTGGTAGTGAATGGGAGTGTCCTCAATGTGA 956
Query 1004 TTTCTATAATTACGGGAGGAATGTAGCTTGCTTAAGATGTGACTGCAAGCGACCCAGGGA 1063
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 957 TTTCTACAATTACGGGAGGAATGTAGCTTGCTTAAGATGTGACTGCAAGCGACCCACGGA 1016
Query 1064 CTCTTCACTCAATTCAGCCAACTCTGATTATTCAAGTGACCCTGAACTTGAGAGAAGACT 1123
|||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 1017 CTCTTCACTCAATTCAACCAACTCTGGTTATTCAAATGATCCTGAACTTGAGAGAAGACT 1076
Query 1124 GGTCGAAAACGAAAAGAAAGCACAGAGGTGGCTTAGTAAAGTAGCACAGGGTGGTTCTGA 1183
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 GGTCGAAAACGAAGAGAAAGCACAGAGGTGGTTTAGTAAAGTAGCACAGGGTGGTTCTGA 1136
Query 1184 TGCGAACAGTGTTGATACAGATGAAGATTTCCCAGAGATTATGCCTTTGAGGAAAGGAGT 1243
| | |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1137 TCCAAACAGTGTTGATACAGATGAAGATTTTCCAAAGATTATGCCTTTGAGGAAAGGAGT 1196
Query 1244 GAATAGATATGTTGTTAGCACGAGGAAGCCACCTCTTGAGAGAAGGTTGGCTAATACTGA 1303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 GAATAGATATGTTGTTAGCACGAGGAAGACACCTCTTGAGAGAAGGTTGGCTAATACTGA 1256
Query 1304 GAACAGAGTAGCTACAGATGGAAACTCGAAAAGGAGCGACGATAATGCTTTGGGAAGTAA 1363
|||||| ||||||||||||||||||||||| |||| ||| | ||| ||||||||||||||
Sbjct 1257 GAACAGTGTAGCTACAGATGGAAACTCGAATAGGAACGATGGTAAGGCTTTGGGAAGTAA 1316
Query 1364 AACAACTAGGAGCTTGAATGAGATTCTTGGTTCTTCATCCTCTTTGACTTCTCGTTCTGA 1423
||||| ||||||||||||||||||||| ||||||||||| |||||| | ||||| |||||
Sbjct 1317 AACAAATAGGAGCTTGAATGAGATTCTCGGTTCTTCATCTTCTTTGGCCTCTCGATCTGA 1376
Query 1424 TGACAAGAATGTATCTTCCAGAAGGTTTGAATCTTCTCAGGGAATAAACACCGATTTTGT 1483
|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 1377 TGACAAAAATGTATCTTCCAGTAGGTTTGAATCTTCCCAGGGAATAAACACTGATTTCGT 1436
Query 1484 TCCTTTCGTGCCATTACCTTCGGATATGTTTGCCAAGAAACCTAAGGAGGAAACACAGAT 1543
|| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CCCATTCGTGCCACTACCTTCAGATATGTTTGCCAAGAAACCTAAGGAGGAAACACAGAT 1496
Query 1544 AGGTCTGATTGACAACATC--C-AAGTGGATGGTTTCTCAGGCGGCAATCAAAATGTCTA 1600
|||||||| |||||||| | | || |||||||| |||||||||||||||||||||||||
Sbjct 1497 AGGTCTGACTGACAACAACAACGAAATGGATGGTGTCTCAGGCGGCAATCAAAATGTCTA 1556
Query 1601 TCAAGAGGACAAGTCAGATGCAAATCACTCTGGCAAAGAAACAGATCGCCTTGAAAAGGA 1660
|||| ||||||||||||||||||||| |||||||||||||| | | |||||||||||||
Sbjct 1557 TCAAAAGGACAAGTCAGATGCAAATCTCTCTGGCAAAGAAA-ATA--GCCTTGAAAAGGA 1613
Query 1661 AGATCACA-AATCAGAGGAACCTGCGAGGTGGTTCAA-ACGGGTCACCGAACTGCACAAT 1718
| ||| | |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1614 TGGTCA-AGAATCAGAGGAACCTGCGAGGTGGTTCAAGA-GGGTCACCGAACTGCACAAC 1671
Query 1719 GTTTCAGACTTGGAAAGCGCAATACCGCAAGAGATTTCTCCTGAGAAAATGCCTATGCGA 1778
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1672 GTTTCAGACTTGGAAAGCACAACACCGCAAGAGATTTCTCCTGATAAAATGCCAATGCGA 1731
Query 1779 AAAGGAGAGAATCGGTTTGTAGTGAGTAGGAAGAAAGACCGTTCACTGACTTCTCCAGCA 1838
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1732 GAAGGAGAGAATCGGTTTGTGGTGAGTAGGAAGAAAGACCGTTCGCTGACTTCTCCAGCA 1791
Query 1839 TACAAGAGGCC---AGAAGATTCAGACTTTGTCCCCTTTGTCCCTTTCCCACCTGACTAC 1895
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 TACAAGAGGCCTTCACAAGATTCAGACTTTGTCCCCTTTGTCCCTTTCCCACCTGACTAT 1851
Query 1896 TTCGCCAAAGAGAAACAACCCAAGGAATCAATAGATACTCTTCCAGCTCCGGCGACAGAA 1955
||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||| |
Sbjct 1852 TTCGCCAAAGAGAAACAACCCAAGGAACCAATAGATGCTATTCCAGCTCCGGCAACAGTA 1911
Query 1956 AACGTTTCTCAGGTAGTACAACAAGAACCAAGAGAACCTTCAATCAACAAATCTGATACA 2015
|||||||| | ||||||||||||||||||||||| ||||||| ||||||||| || | |
Sbjct 1912 AACGTTTCGAATGTAGTACAACAAGAACCAAGAGATCCTTCAAGCAACAAATCCGAAATA 1971
Query 2016 GTGGCAGTGAAG-ATCAGAAATGGAAAGAGCTTGGAGGGTTCGTTAGTGAAGGAGTCAGA 2074
||||||| || | |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1972 GTGGCAGGGA-GTATCAGAAATGGAAAGAGCTTGGAGGGTTCGTTAGTGAAGGAGCCCGA 2030
Query 2075 CTTGTTGGACATGTCAGAGGAAGCAAAAGCAGAGAGATGGTTTAAGAGAGTGGCTGAGAT 2134
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2031 CTTGTTGGACATGTCAGAGGAAGCAAAAGCGGAGAGATGGTTTAAGAGAGTGGCTGAGAT 2090
Query 2135 TAAGAACATATCAGAGCTGAGTGAGATCCCAGACGAAGATTTCCCGTCGATAATGCCGAT 2194
|||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 2091 TAAGAACATATCAGAGCTGAGTCAGATCCCAGACGAAGATTTCCCATCAATAATGCCGAT 2150
Query 2195 GAGGAAAGGAGTGAATAGGTTTGTTGTCAGCAAGAGGAAAACTCCCTTGGAACGGCGTTT 2254
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2151 GAGGAAAGGAGTGAATAGGTTTGTTGTCAGCAAGAGGAAGACTCCCTTGGAACGGCGTTT 2210
Query 2255 AACTTCTCAACGACACCAGAGAAATCCTCATATCACCAACTCTGATCCCACTGGT-AAAG 2313
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||||
Sbjct 2211 AACTTCTCAACGACACCAGAGAAATCCTCAGATCACCGACTCTGATCCCAC-GGTTAAAG 2269
Query 2314 GAGATAAATGA 2324
|||||||||||
Sbjct 2270 GAGATAAATGA 2280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5