BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17800.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488646 jgi|Araly1|488646|fgenesh2_kg.6__1780__AT5G17800.1 1729 0.0
Ahg920720 jgi|Araly1|920720|scaffold_102001.1 187 2e-46
Ahg908956 jgi|Araly1|908956|Al_scaffold_0002_2037 148 7e-35
> Ahg488646 jgi|Araly1|488646|fgenesh2_kg.6__1780__AT5G17800.1
Length=1162
Score = 1729 bits (936), Expect = 0.0
Identities = 1102/1177 (94%), Gaps = 31/1177 (3%)
Strand=Plus/Plus
Query 59 ATGAATCCAAATCTCCTTGAGAAAGATCTAAGAGGTAAGGAAACTACAAATGGGTCAATA 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGAATCCAAATCTCCTTGAGAAAGATCTAAGAGGTAAGGAAACTACAAATGGGTCAAGA 60
Query 119 AGATACAAAGAAGCAAACAACTTCAGATCTCTACCAAACTCACACACTGCTGCTTGTAAA 178
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 AGATACGAAGAAGCAAACAACTTCGGATCTCTACCAAACTCACACACTGCTGCTTGTAAA 120
Query 179 ACTTCACTCAACAACCCCTCTATCTCTAGAAACCATCCTCACAACAAATCAGCCTCAGTC 238
|| ||||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 121 ACGTCACTCAACAACCTCTCTATCTCTAGAAACCTTTCTCATAACAAATCAGCCTCAGTC 180
Query 239 TTGGAGTCGGAAGATGAACATGGGAACGAGAGAGGTGAAAACGAAAAGAGTTTAAGAATG 298
||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 181 TTGCAGTCGGAAGATGAACATGGGAAAGAGAGTGGTGAAAACGAAAAGAGTTTAGGAATG 240
Query 299 AGGGGCAAAAGTGGAATTAACACAAAAGTATGCTCACGAGGACACTGGAGACCAACAGAA 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGGGTAAAAGTGGAATTAACACAAAAGTATGCTCACGAGGACACTGGAGACCAACAGAA 300
Query 359 GATGCTAAACTCAAGGAGCTTGTTGCCCAGTTTGGTCCCCAAAACTGGAACTTGATTTCT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 GATGCTAAACTCAAGGAGCTTGTTGCCCAGTTTGGTCCCCAAAACTGGAACTTGATTGCT 360
Query 419 AACCACCTTCTTGGTAGATCAGGCAAGAGTTGTAGATTGAGATGGTTTAACCAACTAGAC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACCACCTTCTTGGTAGATCAGGCAAGAGTTGTAGATTGAGATGGTTTAACCAACTAGAC 420
Query 479 CCAAGGATTAACAAGAGAGCCTTCACGGAGGAAGAAGAGTTTAGGCTGTTAGCAGCTCAT 538
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 421 CCAAGGATTAACAAGAGAGCCTTCACGGAGGAAGAAGAGCTTAGGCTTTTAGCAGCTCAC 480
Query 539 CGAGCCTATGGCAACAAGTGGGCTTTGATCTCTCGTCTCTTTCCAGGTCGTACCGATAAC 598
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 481 CGAGCCTATGGCAACAAGTGGGCTTTGATCTCTCGTCTCTTCCCCGGACGTACCGATAAC 540
Query 599 GCTGTCAAGAACCATTGGCACGTCATCATGGCTCGACGGACTAGAGAAAGCCAAAGACAA 658
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 GCCGTCAAGAACCACTGGCACGTCATCATGGCTCGACGGACTAGAGAAAGCCAACGACAA 600
Query 659 CGTCAACAGCCTCCTCCGACGTTGTCAAGAGACGCTGAAATGACGGTTTCGTCCTCTTGC 718
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGTCAACAGCCTCCTCCGGCGCTGTCAAGAGACGCTGAAATGACGGTTTCGTCCTCTTGC 660
Query 719 CGCTACAATCAAGGTAAGTTCATCAATGAAGAAGATGACGACGA---CGATG----TG-- 769
|||||||||||||||||||||||||||| ||||||||| || || ||||| ||
Sbjct 661 CGCTACAATCAAGGTAAGTTCATCAATGGAGAAGATGATGAAGATGACGATGACGATGGC 720
Query 770 TCAGCTGTCTCTACTTGTACGACGGAGCTCTCTCTCACTCCGCCTTCTTCAGCTTACCAG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCAGCTGTCTCTACTTGTACGACGGAGCTCTCTCTCACTCCGCCTTCTTCAGCTTACCAG 780
Query 830 CCTCGCTTCTTTAATTACGATAGTACCCTTGCATCAGGCAAAGATGGTCAGTGTGTGCAG 889
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTCGCTTCTTTAATTACGATAATACCCTTGCATCAGGCAAAGATGGTCAGTGTGTGCAG 840
Query 890 AGAGCAGAAGTAAATGGCATATATGGTAAAAAGATGGACCATCAAAATCACCACACAATC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGAGCAGAAGTAAATGGCATATATGGTAAAAAGATGGACCATCAAAATCACCACACAATC 900
Query 950 TCAGTCAGTGAAAGAAAGGTGGAGATGAAGATGAGGAGTGGCTATTACTACTTTGATTTT 1009
|||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||
Sbjct 901 TCAGTCAGTGAAAGAAAGGTGGAGCTGAAGATGAAGAATGGCTATTACTTCTTTGATTTT 960
Query 1010 CTTGGAGTTGGAGCTTCCTGATTAATTAGTTGCAGAGCTAGGGTTCAATGCTGAGG-AAT 1068
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 961 CTTGGAGTTGGAGCTTCTTGATTAATTAGTTGCAGAACTAGGGTTCAATGTTGAGGGAAT 1020
Query 1069 TGTGAGATAAGAAATGGCTTTAGTTTCTTCTATTTTTCCTGGTTAATTAGGCATGTTTGT 1128
|||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 1021 TGTGAGATAAAAAATGGCTTTAGTTTCTTCTATTTT--------A----GGCATGTTTGT 1068
Query 1129 TTAACATCTTAATTTGGGTTTTGGAAGAAGTAAGC-GG--TATGAGGGaaaactg-aaaa 1184
|||||||||||||||||| |||||||||||| || || ||| ||||||||||| ||||
Sbjct 1069 TTAACATCTTAATTTGGGCTTTGGAAGAAGTTGGCTGGGGTATAAGGGAAAACTGGAAAA 1128
Query 1185 caaaaa-caa-aacctagaagtaaaataaaaaGTTGA 1219
||||| ||| || |||| ||||||||||||||||
Sbjct 1129 AAAAAATCAAGAA---AGAAATAAAATAAAAAGTTGA 1162
> Ahg920720 jgi|Araly1|920720|scaffold_102001.1
Length=787
Score = 187 bits (101), Expect = 2e-46
Identities = 242/308 (79%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 335 CGAGGACACTGGAGACCAACAGAAGATGCTAAACTCAAG-GAGCTTGTTGCCCAGTTTGG 393
||||| || |||||||| ||||||||| || || ||| || || || | || |||||
Sbjct 33 CGAGGCCATTGGAGACCTGCAGAAGATGAGAAGCT-AAGAGAACTCGTCGAACAATTTGG 91
Query 394 TCCCCAAAACTGGAACTTGATTTCTAACCACCTTCT-TGGTAGATCAGGCAAGAGTTGTA 452
||| || || |||||| || || | | | ||| |||| |||| |||||||||||||
Sbjct 92 TCCTCATAATTGGAACGCCATAGCTCAGAAGC-TCTCTGGTCGATCTGGCAAGAGTTGTA 150
Query 453 GATTGAGATGGTTTAACCAACTAGACCCAAGGATTAACAAGAGAGCCTT-CACGGAGGAA 511
|||||||||||||||| ||| | || || ||||||||| || | |||| ||||||||||
Sbjct 151 GATTGAGATGGTTTAATCAATTGGATCCTAGGATTAACC-GAAACCCTTTCACGGAGGAA 209
Query 512 GAAGA-GTTTAGGCTGTTAGCAG-CTCATCG-AGCCTATGGCAACA-AGTGGGCTTTGAT 567
||||| | ||||| ||||| | ||||||| | || |||| || | | ||| || ||||
Sbjct 210 GAAGAAGAA-AGGCTTTTAGC-GTCTCATCGGATCC-ATGGGAATAGA-TGGTCTGTGAT 265
Query 568 CTCTCG-TCTCTTTCC-AGGTCGTACCGATAACGCTGTCAAGAACCATTGGCACGTCATC 625
| || | | | ||||| |||||| |||||||||||||| || ||||||||||||||||||
Sbjct 266 CGCTAGAT-T-TTTCCCAGGTCGAACCGATAACGCTGTTAAAAACCATTGGCACGTCATC 323
Query 626 ATGGCTCG 633
||||||||
Sbjct 324 ATGGCTCG 331
> Ahg908956 jgi|Araly1|908956|Al_scaffold_0002_2037
Length=732
Score = 148 bits (80), Expect = 7e-35
Identities = 231/304 (76%), Gaps = 10/304 (3%)
Strand=Plus/Plus
Query 335 CGAGGACACTGGAGACCAACAGAAGATGCTAAACTCAAGGAGCTTGTTGCCCAGTTTGGT 394
||||| || ||||||||| | ||||| | || |||||||| ||||| | || | |||
Sbjct 16 CGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTTGTCGAACAATACGGT 75
Query 395 CCCCAAAACTGGAACTTGATTTCTAACCACCTTCTTGGTAGATCAGGCAAGAGTTGTAGA 454
|| || || |||||| || || | | || | |||| |||| || ||||||||||||
Sbjct 76 CCTCATAATTGGAACGCCATAGCTCTCAAGCTCCCTGGTCGATCTGGTAAGAGTTGTAGA 135
Query 455 TTGAGATGGTTTAACCAACTAGACCCAAGGATTAACAAGAGAGCC-TTCACGGAGGAAGA 513
||||| |||||||| ||| | || |||||||| ||| || | || |||||||| |||||
Sbjct 136 TTGAGGTGGTTTAATCAATTGGATCCAAGGATAAAC-CGAAACCCTTTCACGGAAGAAGA 194
Query 514 AG-AGTTTAGGCTGTTAGCAGCTCATC-GAGCCTATGGCAACAAG-TGGGCTTTGATCTC 570
|| || || || ||||| ||||||| || || |||| ||| || ||| | | ||| |
Sbjct 195 AGAAG-AAAGACTTTTAGCGGCTCATCGGATCC-ATGGGAAC-AGATGGTCCATCATCGC 251
Query 571 TCGTCTCTTT-CCAGGTCGTACCGATAACGCTGTCAAGAACCATTGGCACGTCATCATGG 629
| || ||| || || | || |||||||| ||||||||||||||||||||||||||||
Sbjct 252 AAGGCT-TTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCACGTCATCATGG 310
Query 630 CTCG 633
||||
Sbjct 311 CTCG 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5