BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17810.1 Length=996 Score E Sequences producing significant alignments: (Bits) Value Ahg893698 jgi|Araly1|893698|Al_scaffold_0006_1694 1175 0.0 > Ahg893698 jgi|Araly1|893698|Al_scaffold_0006_1694 Length=801 Score = 1175 bits (636), Expect = 0.0 Identities = 751/807 (93%), Gaps = 6/807 (1%) Strand=Plus/Plus Query 74 ATGAATCAAGAAGGTGCTTCACATAGCCCATCCTCCACTTCCACCGAACCAGTCCGGGCA 133 ||| ||||| ||||||| || ||||| ||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGATCAACAAGGTGCATCGCATAGTCCATCCTCCACATCCACCGAACCAGTCCGGGCA 60 Query 134 CGTTGGTCACCTAAACCGGAGCAAATCTTGATACTCGAATCCATCTTCAACAGTGGTACT 193 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 61 CGTTGGTCACCTAAACCGGAGCAAATCTTGATACTTGAATCTATCTTCAACAGTGGTACT 120 Query 194 GTTAACCCACCAAAAGATGAAACGGTGAGGATAAGAAAGATGCTTGAGAAATTCGGTGCT 253 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTAACCCACCAAAAGACGAAACGGTGAGGATAAGAAAGATGCTTGAGAAATTCGGTGCA 180 Query 254 GTGGGAGACGCAAACGTCTTCTACTGGTTTCAAAACCGACGGTCAAGATCTCGCCGGAGA 313 |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 181 GTGGGAGACGCAAATGTCTTCTACTGGTTTCAAAATCGAAGGTCAAGATCTCGCCGGAGA 240 Query 314 CACCGGCAGCTTTTAGCAGCCACCACCGCAGCCGCCACCTCCATAGGAGCTGAAGACCAC 373 || |||||||| |||||||||| |||| || | ||||||||||||||||||||||||| Sbjct 241 CAGCGGCAGCTCCAAGCAGCCACCGCCGCTGCTGTCACCTCCATAGGAGCTGAAGACCAC 300 Query 374 CAGCACATGACGGCCATGAGCATGCATCAATATCCTTGCAGCAACAACGAGATTGATTTG 433 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 301 CAGCACATGACGGCCATGAGCATGCATCAATATCCTTGCAGCAACAGCGAGATTGGTTTG 360 Query 434 GGGTTTGGAAGTTGTAGCAACTTATCAGCTAATTACTTCCTTAATGGATCGTCGTCATCT 493 ||||||||||||| ||| |||| |||||||| ||||||||||||||||||||| ||||| Sbjct 361 GGGTTTGGAAGTTATAGTAACTCATCAGCTAGTTACTTCCTTAATGGATCGTCTTCATCG 420 Query 494 CAAATCCCTTCCTTTTTCCTCGGCCTCTCTTCTTCAAGTGGTGGGTGTGAGAACAACAAT 553 ||| ||||||||||||||||||| ||||||||| ||||||||| || ||||| ||||||| Sbjct 421 CAAGTCCCTTCCTTTTTCCTCGGACTCTCTTCTCCAAGTGGTGAGTATGAGAGCAACAAT 480 Query 554 GGTATGGAGAATCTCTTCAAAATGTATGGCCATGAATCTGATCATAATCATCAGCAGCAG 613 |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 481 GGTATGGAGAATCTCTTCAAAATGTATGGCCACGAATCTG------ATCATCAGCAGCAG 534 Query 614 CATCATAGCTCAAATGCTGCATCAGTTTTAAACCCATCTGATCAAAACTCCAACTCCCAA 673 ||||| ||||||||||||||||||||||||||||| |||| |||||||||||| | |||| Sbjct 535 CATCACAGCTCAAATGCTGCATCAGTTTTAAACCCGTCTGTTCAAAACTCCAATTTCCAA 594 Query 674 TACGAACAAGAAGGGTTTATGACGGTGTTTATAAACGGAGTTCCTATGGAAGTAACAAAA 733 ||| || ||||||||| ||||||||||||||||||||||||||| | ||||||||||||| Sbjct 595 TACCAAGAAGAAGGGTGTATGACGGTGTTTATAAACGGAGTTCCGACGGAAGTAACAAAA 654 Query 734 GGAGCAATAGACATGAAAACAATGTTCGGTGATGATTCGGTGTTACTTCATTCCTCTGGT 793 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 655 GGAGCAATAGACATGAAAGCAATGTTCGGTGAAGATTCGGTGTTACTTCATTCCTCTGGT 714 Query 794 CTTCCTCTTCCCACTGATGAGTTTGGTTTCTTGATGCATTCTTTACAACATGGACAAACT 853 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 715 CTTCCTCTTCCCACTGATGAGTTTGGTTTCTTGATGCATTCTTTACAACATGGCCAAGCT 774 Query 854 TATTTCCTGGTACCGAGACAGACATGA 880 ||||||||||||||||||||||||||| Sbjct 775 TATTTCCTGGTACCGAGACAGACATGA 801 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37017352407 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5