BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17810.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893698 jgi|Araly1|893698|Al_scaffold_0006_1694 1175 0.0
> Ahg893698 jgi|Araly1|893698|Al_scaffold_0006_1694
Length=801
Score = 1175 bits (636), Expect = 0.0
Identities = 751/807 (93%), Gaps = 6/807 (1%)
Strand=Plus/Plus
Query 74 ATGAATCAAGAAGGTGCTTCACATAGCCCATCCTCCACTTCCACCGAACCAGTCCGGGCA 133
||| ||||| ||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGATCAACAAGGTGCATCGCATAGTCCATCCTCCACATCCACCGAACCAGTCCGGGCA 60
Query 134 CGTTGGTCACCTAAACCGGAGCAAATCTTGATACTCGAATCCATCTTCAACAGTGGTACT 193
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 61 CGTTGGTCACCTAAACCGGAGCAAATCTTGATACTTGAATCTATCTTCAACAGTGGTACT 120
Query 194 GTTAACCCACCAAAAGATGAAACGGTGAGGATAAGAAAGATGCTTGAGAAATTCGGTGCT 253
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTAACCCACCAAAAGACGAAACGGTGAGGATAAGAAAGATGCTTGAGAAATTCGGTGCA 180
Query 254 GTGGGAGACGCAAACGTCTTCTACTGGTTTCAAAACCGACGGTCAAGATCTCGCCGGAGA 313
|||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 181 GTGGGAGACGCAAATGTCTTCTACTGGTTTCAAAATCGAAGGTCAAGATCTCGCCGGAGA 240
Query 314 CACCGGCAGCTTTTAGCAGCCACCACCGCAGCCGCCACCTCCATAGGAGCTGAAGACCAC 373
|| |||||||| |||||||||| |||| || | |||||||||||||||||||||||||
Sbjct 241 CAGCGGCAGCTCCAAGCAGCCACCGCCGCTGCTGTCACCTCCATAGGAGCTGAAGACCAC 300
Query 374 CAGCACATGACGGCCATGAGCATGCATCAATATCCTTGCAGCAACAACGAGATTGATTTG 433
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 301 CAGCACATGACGGCCATGAGCATGCATCAATATCCTTGCAGCAACAGCGAGATTGGTTTG 360
Query 434 GGGTTTGGAAGTTGTAGCAACTTATCAGCTAATTACTTCCTTAATGGATCGTCGTCATCT 493
||||||||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||
Sbjct 361 GGGTTTGGAAGTTATAGTAACTCATCAGCTAGTTACTTCCTTAATGGATCGTCTTCATCG 420
Query 494 CAAATCCCTTCCTTTTTCCTCGGCCTCTCTTCTTCAAGTGGTGGGTGTGAGAACAACAAT 553
||| ||||||||||||||||||| ||||||||| ||||||||| || ||||| |||||||
Sbjct 421 CAAGTCCCTTCCTTTTTCCTCGGACTCTCTTCTCCAAGTGGTGAGTATGAGAGCAACAAT 480
Query 554 GGTATGGAGAATCTCTTCAAAATGTATGGCCATGAATCTGATCATAATCATCAGCAGCAG 613
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 481 GGTATGGAGAATCTCTTCAAAATGTATGGCCACGAATCTG------ATCATCAGCAGCAG 534
Query 614 CATCATAGCTCAAATGCTGCATCAGTTTTAAACCCATCTGATCAAAACTCCAACTCCCAA 673
||||| ||||||||||||||||||||||||||||| |||| |||||||||||| | ||||
Sbjct 535 CATCACAGCTCAAATGCTGCATCAGTTTTAAACCCGTCTGTTCAAAACTCCAATTTCCAA 594
Query 674 TACGAACAAGAAGGGTTTATGACGGTGTTTATAAACGGAGTTCCTATGGAAGTAACAAAA 733
||| || ||||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 595 TACCAAGAAGAAGGGTGTATGACGGTGTTTATAAACGGAGTTCCGACGGAAGTAACAAAA 654
Query 734 GGAGCAATAGACATGAAAACAATGTTCGGTGATGATTCGGTGTTACTTCATTCCTCTGGT 793
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 GGAGCAATAGACATGAAAGCAATGTTCGGTGAAGATTCGGTGTTACTTCATTCCTCTGGT 714
Query 794 CTTCCTCTTCCCACTGATGAGTTTGGTTTCTTGATGCATTCTTTACAACATGGACAAACT 853
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 715 CTTCCTCTTCCCACTGATGAGTTTGGTTTCTTGATGCATTCTTTACAACATGGCCAAGCT 774
Query 854 TATTTCCTGGTACCGAGACAGACATGA 880
|||||||||||||||||||||||||||
Sbjct 775 TATTTCCTGGTACCGAGACAGACATGA 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5