BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17820.1
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488648 jgi|Araly1|488648|fgenesh2_kg.6__1782__AT5G17820.1 1428 0.0
> Ahg488648 jgi|Araly1|488648|fgenesh2_kg.6__1782__AT5G17820.1
Length=1196
Score = 1428 bits (773), Expect = 0.0
Identities = 953/1041 (92%), Gaps = 8/1041 (1%)
Strand=Plus/Plus
Query 1 TATATACCTTATGGTT-GATCTTAAATGACTCACAACCCTTTCCACAAGAAGTTATAAAC 59
|||||| ||||| ||| ||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1 TATATATCTTAT-GTTCGATCTTAAAGGACTCACAACCCTTTCCACAAGAAG-TATAAAC 58
Query 60 CAATACATAG-AAGAAAACTTCCAACCCCAAAAAATGATGAAGGGTGCCAAGTTTTCATC 118
|||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 59 CAATACATAGAAAAAAAACTCCCAACCCCAAAAAATGATGAAGGGTGCCAAGTTTTCTTC 118
Query 119 TCTTCTTGTGCTTTTCTTTATTTTTCCGATCGCATTTGCTCAACTGAGAGTCGGGTTTTA 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 TCTTCTTGTGCTTTTCTTTATTTTTCCAATCGCATTTGCTCAACTGAGAGTCGGGTTTTA 178
Query 179 TAGTCAATCATGCCCTCAAGCCGAGACTATCGTACGCAATCTGGTGCGCCAACGGTTTGG 238
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 TAGCCGGTCATGCCCTCAAGCCGAGACTATCGTACGCAATCTGGTACGCCAACGGTTTGG 238
Query 239 TGTT-ACCCCAACCGTTACCGCCGCTTTGCTCCGTATGCATTTCCACGACTGTTTCGTTA 297
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGTTGA-CCCAACCGTTACCGCCGCTTTGCTCCGTATGCATTTCCACGACTGTTTCGTTA 297
Query 298 AGGGCTGTGACGCTTCTCTCCTCATTGATTCAACCA-ATTCCGAGAAAACTGCTGGACCA 356
||| || |||||||||||||| ||||||||||| | || |||||||||| |||||||||
Sbjct 298 GGGGTTGCGACGCTTCTCTCCTTATTGATTCAACTACAT-CCGAGAAAACCGCTGGACCA 356
Query 357 AACGGAAGCGTCAGGGAATTTGACCTGATAGACCGGATCAAGGCTCAGCTAGAAGCTGCA 416
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 357 AACGGAAGCGTTAGGGAATTTGACCTGATCGACCGGATCAAGGCTCAGCTAGAGGCTGCA 416
Query 417 TGCCCTTCCACAGTCTCATGTGCTGACATCGTCACATTGGCCACACGTGACTCGGTGGCC 476
||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 417 TGCCCATCCACAGTCTCATGTGCTGACATCGTCACATTAGCCACACGAGACTCTGTGTTA 476
Query 477 TTAGCCGGAGGCCCAAGCTACAGCATCCCCACGGGAAGGCGTGACGGTAGGGTCTCAAAC 536
|||||||||||||| |||||||| ||||| || |||||||| |||||||| ||||| |||
Sbjct 477 TTAGCCGGAGGCCCGAGCTACAGAATCCCTACAGGAAGGCGCGACGGTAGAGTCTCGAAC 536
Query 537 AATCTTGATGTAACCTTACCGGGTCCAACGATCTCCGTCTCTGGAGCCGTGAGTTTATTC 596
||| |||| ||| ||||| |||||||| ||||||||||| ||||| |||||||| |||
Sbjct 537 AATGTTGACGTAGGTTTACCAGGTCCAACAATCTCCGTCTCCGGAGCTGTGAGTTTCTTC 596
Query 597 ACGAACAAAGGGATGAACACGTTCGATGCAGTAGCTCTTTTGGGTGCACACACTGTTGGT 656
|||||||||||| |||||||||| ||||| || || ||||||||||||||||| ||||||
Sbjct 597 ACGAACAAAGGGTTGAACACGTTTGATGCTGTGGCGCTTTTGGGTGCACACACCGTTGGT 656
Query 657 CAAGGAAATTGTGGTCTCTTTAGTGACAGAATCACTAGCTTCCAAGGAACTGGACGACCG 716
|| ||||||||||||||||| |||||| | ||||||| |||||||||||| ||| ||||
Sbjct 657 CAGGGAAATTGTGGTCTCTTCAGTGACCGGATCACTAACTTCCAAGGAACCGGAAGACCC 716
Query 717 GACCCGTCCATGGACCCCGCTTTGGTTACCAGCCTAAGGAACACATGCAGAAATAGCGCG 776
|||||||||||| | || |||||||| |||||||||||||||||||||||||| || |||
Sbjct 717 GACCCGTCCATGAATCCAGCTTTGGTAACCAGCCTAAGGAACACATGCAGAAACAGTGCG 776
Query 777 ACGGCGGCACTAGACCAGTCGAGTCCATTGAGATTCGACAACCAGTTCTTCAAGCAAATC 836
|||||||||||||||||||||| ||||||||| || |||||||| |||||||| || |||
Sbjct 777 ACGGCGGCACTAGACCAGTCGACTCCATTGAGGTTTGACAACCAATTCTTCAAACAGATC 836
Query 837 CGTAAAAGGAGAGGAGTGTTGCAAGTTGACCAACGCCTCGCATCCGACCCACAGACTCGT 896
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 837 CGTAAAAGAAGAGGAGTGTTGCAGGTTGACCAACGTCTCGCATCCGACCCACAAACTCGT 896
Query 897 GGGATTGTGGCTCGGTATGCTAATAACAACGCCTTCTTCAAGCGTCAGTTCGTTAGAGCA 956
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 897 GGGATTGTGGCTCGGTATGCTAATAACAACGCCTACTTCAAACGTCAGTTCGTTAGAGCA 956
Query 957 ATGGTGAAGATGGGAGCAGTTGATGTGCTTACTGGTCGTAACGGTGAGATCAGAAGGAAC 1016
|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 957 ATGGTGAAAATGGGAGCCGTTGATGTGCTTACCGGTCGTAACGGTGAGATCAGAAGGAAC 1016
Query 1017 TGCAGGAGATTCAACTAATGA 1037
||||||||||| |||| ||||
Sbjct 1017 TGCAGGAGATTTAACTGATGA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5