BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17830.1
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893700 jgi|Araly1|893700|Al_scaffold_0006_1696 1772 0.0
> Ahg893700 jgi|Araly1|893700|Al_scaffold_0006_1696
Length=1497
Score = 1772 bits (959), Expect = 0.0
Identities = 1231/1357 (91%), Gaps = 40/1357 (3%)
Strand=Plus/Plus
Query 79 CAACCAGTAACTCCTCCCGCCGCACAGCAACAGCAACAGCAACCGCAACAGCAAACACTA 138
||||| |||||||||||||||||||||| | | | | |||||||||||| |||||||||
Sbjct 121 CAACCCGTAACTCCTCCCGCCGCACAGC-A-A-C--C-GCAACCGCAACAACAAACACTA 174
Query 139 TCCGGAAGATTCTTCAGATGCCTCTTCACTTGTATCTTCTACACGCAACTAACCCTAATC 198
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ACCGGAAGATTCTTCCGATGCCTCTTCACTTGTATCTTCTACACGCAACTAACCCTAATC 234
Query 199 TCGATCTTTGTGATCCTTCTCACGCTACGAGGTCTCGTCTGCACCAAATCACCAAACTTC 258
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 235 TCGATCTTCGTGATCCTTCTCACGCTACGAGGTCTCGTCTGCACCAAAACACCAAACTTC 294
Query 259 CATCCCAAGAAATGGTACACTCCTCTGTTATCCTCTGTTGCTGTCTCCGGAGTCCTCTCT 318
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 295 CATCCCAAGAAATGGTACACTCCTCTGTTATCCTCTGTTGCTGTCTCCGGAATCCTCTCT 354
Query 319 ATAGCCTGGAACTGCTTCTTCGTCTGCAACATACGAGCCACAGTCAAAGCAACGTTCTGG 378
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTAGCCTGGAATTGCTTCTTCGTCTGCAACATACGAGCCACAGTCAAAGCAACGTTCTGG 414
Query 379 TTCACACCGTTATTCACAATCTCCGTGGGGCTCTTCCTAATTCTCCT-CGACAAATCCAA 437
||| |||||||| ||||| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct 415 TTCTCACCGTTACTCACACTCTCCGTCGGGCTCTTCCTAATTCTC-TACGACAAATCCAA 473
Query 438 TCCCGTCGTTCTATGGATAGGTGCACTTCTTGTCT-TCTATAGCATCGTCACCGCAGTGT 496
|||||| |||||||| |||||||||||| |||| | ||||||||||||| || | | |||
Sbjct 474 TCCCGTTGTTCTATGTATAGGTGCACTTATTGT-TGTCTATAGCATCGTTACGGAAATGT 532
Query 497 ATGGTTCGCTTCACGTCACGAACAGGCATGAATTCACCTTCCAGACGATGTCAACCGCCA 556
|||| |||| |||||| ||||| | |||||||||||||| ||| |||||||| |||||
Sbjct 533 ATGGCGGGCTTTACGTCAGGAACAAGTATGAATTCACCTTCAAGATGATGTCAATCGCCA 592
Query 557 CAGGGATATTACCCGCAAGAACCAGAGCAATAGCAGTTGTATCAGTGATCATAAGCGTCT 616
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 593 CAGGGATGTTACCAACAAGAACCAGAGCAATAGCAATTGTATCAGTGATCATAAGCGTCT 652
Query 617 TTTACTCTGATTTCTTGGTTGCTGGAATCGGTGGAGCTACTGCTACAGGAACACGTCTTG 676
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 653 TTTACTCTGGTTTCTTGGTTGCTGGAATCGGTGGAGCTACTGCTACAAGAACACGTCTTG 712
Query 677 ATATTCTTTTCATCTCCATCATCGTGATAAACCTTGCCTGGACAATGCAGGTTATCAAAA 736
|||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 713 ATATTCTTTTCATCTCTATCATCGTGATAAGCCTTGCCTGGACAATGCAGGTTCTCAAAA 772
Query 737 ACGTACAAGAAGTCGCGATTTCGAAAGCCA-TATATGTATACTTTAGCCGTGATGATCTC 795
||||||||||||| |||||||||||||| | | |||||||||||||| |||||||| ||
Sbjct 773 ACGTACAAGAAGTGGCGATTTCGAAAGCTACT-TATGTATACTTTAGGCGTGATGAGGTC 831
Query 796 ATGAATGCATGTGATGCTCTTGGCGTCACTCTGAAAAAGCAGCTCGGGAGTGTTTGTATT 855
||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct 832 ATGAATGCATGTGATGCTCTTGGTGTCACTCTGAAAAAACAGCTAGGGATTGTTTGTATT 891
Query 856 GGTTCAACACTTGTTCCACTTATTGTACTCTTTAGGGGAACGATTCGGTGTTGTAATC-G 914
||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| ||||| |
Sbjct 892 GGTTCAACACTCGTTCCACTTATTGTACTCTATAGGGGAATGATTCGGGGTTTTAATCTG 951
Query 915 ---GG-A-------C-A---T-------T-TATGCAAGTACCCCAGGCTGCAACTGGATT 951
|| | | | | | |||| |||||| | ||||||||| ||||||
Sbjct 952 CAAGGCAGGTGTGACGACGATCAGGAGATGTATGAAAGTACTCGAGGCTGCAATTGGATT 1011
Query 952 GCCAATCATATCATTTTGGGTGGAAATAGATATGGATTTGTTCACGTGGGAGCTCACAAC 1011
||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1012 GCCAATCATATTATTTTGTGTGGAAATAGATATGGATTTGTTCATGTGGGAGCTTACAAA 1071
Query 1012 AAAGGGTT-AAGGCAAGCGTCTAGTGATACCTGGAGGAGGTTTAGAACAATCCCTGAATT 1070
|||||||| ||| |||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 1072 AAAGGGTTTAAG-CAAGCGTCTAGTGATACCTGGAGGAGGTTTAGAACAGTCGCTGGATT 1130
Query 1071 TGAGCAGTTGATTGATTTTGACATCACCAGCTCCATCTGTTTCTTTAGCGCCATGGGAAT 1130
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1131 TGAGCAGTTGATTGATTTTGACATCACCAGCTCCATCTGTTTCTCTAGCGCCATGGGAAT 1190
Query 1131 TGGTGCAATCGCTGCATTAACTGCAGGAGTATGGGAGCTTCTGATCGATAAGGATCACTA 1190
||||||| || ||||||| |||||| || |||||||||||||||| |||| |||||||||
Sbjct 1191 TGGTGCAGTCTCTGCATTGACTGCACGAATATGGGAGCTTCTGATTGATAGGGATCACTA 1250
Query 1191 CTTTGAGCTGACTATCTATGCTTTCATCATCGGATACTTTGTGGGGAGAGTTTCTTCTGC 1250
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1251 CTTTGAGCTGACTATCTACGCTTTCATCATCGGATACTTTGTGGGGAGAGTTTCATCTGC 1310
Query 1251 GTGGCTACAAGCTTGTGTGATGGGTTACTATGTAGCTTATTCTGAAGATCCACAGAACGA 1310
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1311 GTGGCTACAAGCTTGTGTGATGGGTTACTATGTAGCTTATTCTGAGGATCCACAGAGCGA 1370
Query 1311 TAGGTTTGATGACACGATTCCACAAC-GTATCGAGCGACAAAAAATCGAAAAGGCAAAAA 1369
|| ||||||| ||||||||||| ||| |||| ||||| ||||| ||||||||||||||||
Sbjct 1371 TAAGTTTGATAACACGATTCCA-AACCGTATTGAGCGGCAAAATATCGAAAAGGCAAAAA 1429
Query 1370 GAGAAGTCGAGGATAATAGAGTGCAGGAAGATGATGA 1406
||||||||||| |||||||||| | ||||| ||||||
Sbjct 1430 GAGAAGTCGAGCATAATAGAGTCCTGGAAGTTGATGA 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61096752980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5