BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17840.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488650 jgi|Araly1|488650|fgenesh2_kg.6__1784__AT5G17840.1 798 0.0
> Ahg488650 jgi|Araly1|488650|fgenesh2_kg.6__1784__AT5G17840.1
Length=700
Score = 798 bits (432), Expect = 0.0
Identities = 650/746 (87%), Gaps = 51/746 (7%)
Strand=Plus/Plus
Query 23 TTCGATTTCGAATTTTCCATCTTTCGATTCTCAGTAGTTTCGTCTCAATTTCATAATTCC 82
|||||||||||||||| |||||||||||| | | |||||||| || || ||||||
Sbjct 1 TTCGATTTCGAATTTTTCATCTTTCGATTTTTACTAGTTTCG--TC----TC--AATTCC 52
Query 83 AT-TGTAGCCGATAATGAATTCCGCTTTAGATTTTGCTTTTCCGGCTACATTTCCGGTTA 141
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 -TGTGTAGCCGACAATGAATTCCGCTTTAGATTTTGCTTTTCCGGCTACATTTCCGGTTA 111
Query 142 AATCGAGTTCTGTTGGCGGACATCGGATTGCTTCCCCTGGATTCAGTTCCCGCTTAAGAT 201
||||||||||||||||||||||| ||||| |||| |||||||| |||||||| ||||||
Sbjct 112 AATCGAGTTCTGTTGGCGGACATGGGATTCCTTCTTCTGGATTCGGTTCCCGCGTAAGAT 171
Query 202 TGTGCTCTCTTCCTCCTTCTTCATCTATCAAGGCTGAGTCATGTTTAAAAAGAGACGTGC 261
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 172 TTTGCTCTCTTCCTCCTTGTTCATCTATCAAGGCTGAGTCATGTTTAAAAAGAGACCAGC 231
Query 262 ACAGGCAAAGAAGCAGTCTTGAGTCAATGTTCTGTTATGATAAACCAATACCAGAGGAAA 321
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATAAGCAAAGAAGCAGTCTTGAGTCAATGTTCTGTTATGATAAACCAATACCAGAGGAAA 291
Query 322 TAATCGAGGAGCCAGTTGGATTATCCATGTCAGAGAGAGAGATTGGTGATAATCAGCGTT 381
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TAATAGAGGAGCCAGTAGGATTATCCATGTCAGAGAGAGAGATTGGTGATAATCAGCGTT 351
Query 382 GCACTTGTTGTGAAGCTAAAGGTGCATTGCTTTGTTCCACTTGTTCTGGAACTGGTCTAT 441
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 352 GCACTTGTTGTGAAGCTAAAGGTGCATTGCTTTGTGCAACTTGTTCTGGAACTGGTCTAT 411
Query 442 ATGTAGATTCCATTATGGAGAGTCAAGGCATCATTGTTAAAGTCCGTTGCTTAGGTTGTG 501
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 412 ATGTAGACTCAATTATGGAGAGCCAAGGCATCATTGTTAAAGTCCGTTGCTTAGGTTGTG 471
Query 502 GTGGAAGTGGTAATATTATGTGCAAACTTTGTGGTGGGCGTGGTCACGTAGGACACTGAT 561
|||||| |||||| |||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 472 GTGGAACTGGTAACATTATGTGCAAAAGTTGTGGCGGGCGTGGTCACGTAGGACACTAAT 531
Query 562 GACTCCGTGTTTCACTTGTTTGCACTCATGGTTCTGTTTTACCTATTCGCCACTTTTTCT 621
||| | | | || | | | ||||||||||||||||| |||||||||||
Sbjct 532 GAC---G-----C--T------CA-T-A-G-TTCTGTTTTACCTATTCCCCACTTTTTCT 571
Query 622 AGCTCTGATCTTATTGTAAAAGCCTACTTTTTTGAGTTCCATACATAGATTTGTGTTC-T 680
||||||||||||||||||| | | | | || ||| | |||| |||| |
Sbjct 572 --CTCTGATCTTATTGTAAAATCAAA--------A-T-CC-TACGTT--TTTGAGTTCCT 616
Query 681 TGTACTGATGTAATCTCTAGCT-AAACTATGCACAATCTTGTCCCAGACT--ATTCATTT 737
| |||||||||| ||||||||| |||| || |||||||||| |||| | ||||||||
Sbjct 617 T-TACTGATGTACTCTCTAGCTGAAAC-ATTTACAATCTTGTAACAGAGTCCATTCATTT 674
Query 738 TCTGTTGTTATATAAAATGGTTTCCT 763
|| ||| |||||||||||||||||||
Sbjct 675 TCCGTTCTTATATAAAATGGTTTCCT 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5