BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17860.1
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488652 jgi|Araly1|488652|fgenesh2_kg.6__1786__AT5G17860.1 3166 0.0
> Ahg488652 jgi|Araly1|488652|fgenesh2_kg.6__1786__AT5G17860.1
Length=1991
Score = 3166 bits (1714), Expect = 0.0
Identities = 1904/1995 (95%), Gaps = 15/1995 (1%)
Strand=Plus/Plus
Query 4 CCACTTCATACCCATTTGCTTCCTTGAATGGCAAGtctcttctcctcacgtctcggctct 63
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CCACTTCATAATAATTTGCTTCCTTGAATGGCAAGTCTCTTCTCCTCACGTCTCAGCTCT 60
Query 64 caatctctttctctcctcatcaacatcttcttcatctttctcatctttctccatttcgct 123
| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 61 CGTTCTCTTTCTCTCCTCATCAACATCTTCTTCATCTTCCTCATCTATCTCCATTTCGCT 120
Query 124 tcaCAAACTCCTCCTCCCTCCGGATCCATCCAAACCTTAAATTCCT-TTGCCGGCGGTGA 182
||||||| |||| ||||||| |||||||||||||||||||||| || | |||||||||||
Sbjct 121 TCACAAAATCCTTCTCCCTCTGGATCCATCCAAACCTTAAATT-CTCTCGCCGGCGGTGA 179
Query 183 CAGTGACAGCTGCAGCGGAGGACTCGCCAGCCTTGACGACCACCGTTCCAAGTGTTCTTA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CAGTGACAGCTGCAGCGGAGGACTCGCCAGCCTTGACGACCACCGTTCCAAGTGTTCTTA 239
Query 243 CATAAGATCTCAATCAAAATGTGGCCCACAAGGTTACATAGACTATCTCAAGATTTTCTT 302
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CATTAGATCTCAATCAAAATGTGGCCCACAAGGTTACATAGACTATCTCAAGATTTTCTT 299
Query 303 CTGCATCTTCGGACAATCCCCTGTTTTGGGCCATCTAGTTTTATCCGCCTGGTTGTTTGT 362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 CTGCATCTTCGGACAATCCCCTGTTTTGGGCCATCTAGTTTTATCCGTCTGGTTGTTTGT 359
Query 363 TCTGTTCTACTTGCTCGGAGACACGGCCGCGAGTTACTTCTGTCCTTCTTTAGACAGCTT 422
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTGTTTTACTTGCTCGGAGACACGGCCGCGAGTTACTTCTGTCCTTCTTTAGACAGCTT 419
Query 423 ATCTAAGGTTTTGAAGCTGTCTCCTACAATGGCTGGAGTCACGCTTCTCTCTCTTGGCAA 482
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 420 ATCTAAGGTTTTGAAGCTGTCTCCTACAATGGCTGGAGTCACGCTTCTTTCTCTCGGCAA 479
Query 483 CGGTGCGCCTGATTTGTTCTCAAGTGTTGTCTCCTTCACAAGATCGAATAATGGCGATTT 542
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CGGTGCACCTGATTTGTTCTCAAGTGTTGTCTCCTTCACTAGATCGAATAATGGCGATTT 539
Query 543 TGGGCTCAACTCTATTTTAGGCGGTGCGTTCTTCGTCTCTAGCTTCGTTGTTGGGACGAT 602
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 CGGGCTCAACTCGATTTTAGGCGGTGCGTTCTTTGTCTCTAGCTTCGTTGTTGGGACGAT 599
Query 603 TTGTGTGTTGATTGGATCTAGAGATGTCGCTATCGACAGAAATAGCTTTATCCGCGACGT 662
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 600 TTGTGTGTTGATTGGATCTAGAGATGTCTCTATCGACAGAAACAGCTTTATCCGCGACGT 659
Query 663 GGTTTTTCTTCTTGTCGCTCTTTGCTGTCTCGGTTTGATCATCTTCATAGGCAAAGTAAC 722
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTTTTTCTTCTGGTCGCTCTTTGCTGTCTCGGTTTGATCATCTTCATAGGCAAAGTAAC 719
Query 723 CATTTGGGTCGCTCTCTGTTATCTCTCCATTTATCTCCTCTATGTAGGGTTTTTATCGGT 782
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 720 CATTTGGGTCGCTCTCTGTTACCTCTCCATTTATCTCCTCTATGTAGGGCTCTTATCGGT 779
Query 783 TTCACATTTCTTTGACCGCAAGAAACGTATGTCCGATCAGATTCTTCGTAGCAGAGAAGA 842
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 780 TTCTCATTTCTTTGACCGCAAGAAACGTATGTCCGATCAGATTCTTCGAAGCAGAGAGGA 839
Query 843 TTTGGCCGAGATGGGTGTTTCGTTGCTAGGCTATATAGCAGAGGAGAAGCTGGCTTTGCC 902
||| ||||||||||||||| ||||| ||||| ||||| |||||||||||| || |||||
Sbjct 840 TTTAGCCGAGATGGGTGTTCCGTTGTTAGGCGATATAACAGAGGAGAAGCCGGTTTTGCT 899
Query 903 AGAGAAAACAACTCAAGAATTCAAGATTGTGTTTGAAGATTCTCCAAAAAGGCACCGATC 962
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 900 AGAGAAAACAGCTCAAGAATTCAAGATTGTGTTTGAAGATCCTCCAAAAAGGCACCGATC 959
Query 963 TTGCTTCTCGGTGCTAGTGAGCATAATTGGACTACCTCTATATCTCCCCAGGCGGCTCAC 1022
||||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||
Sbjct 960 TTGCTTCTCGGTGCTAGTGTGCATCATAGGACTACCTCTATATCTCCCCAGACGGCTCAC 1019
Query 1023 AATTCCCGTCGTTTGCGAAGAAAAATGGTCAAAGCCTTGCGCTGTGGTTTCCACGGCCAT 1082
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 AATTCCCGTCGTTCGCGAAGAAAAATGGTCAAAGCCTTGCGCTGTGGTTTCCACAGCCAT 1079
Query 1083 CGCTCCTGTTCTACTAACCGAACTTTACTGTTCTCATTACAGCGGGTCACAAAGAAACCT 1142
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1080 CGCGCCTGTTCTACTAACCGAACTTTACTGTTCTCATTACAGCGGATCCCAAAGAAACCT 1139
Query 1143 AATCTTGTACATAATATCCGGATCTATCGGGCTAATCGTCGGTATCTTAGCTTACTTGAC 1202
|||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1140 AATCCTGTACAAAATATCCGGATCTATTGGGCTAATCCTCGGTATCTTAGCTTACTTGAC 1199
Query 1203 GACAGAAAAATCACATCCGCCGAAGAAATTCTCATTAGTTTGGCTTCTAGGAGGCTTCAC 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GACAGAAAAATCACATCCGCCGAAGAAATTCTCATTAGTTTGGCTTCTAGGAGGCTTCAC 1259
Query 1263 GATGAGTGTGACATGGACATACATGATAGCACAAGAGCTAGTCTCATTGTTAATATCCTT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GATGAGTGTGACATGGACATACATGATAGCACAAGAGCTAGTCTCATTGTTAATATCCTT 1319
Query 1323 AGGTAATATCTTTGGTATAAGCCCATCCGTGCTAGGACTAACCGTCCTAGCTTGGGGAAA 1382
|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1320 CGGTAATATCTTTGGCATAAGCCCCTCCGTGCTAGGACTAACGGTCCTAGCTTGGGGTAA 1379
Query 1383 TTCTCTAGGCGATCTTATCGCGAATGTGACCGTGGCGTTTCACGGAGGCAACGATGGTGC 1442
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1380 TTCTCTAGGCGATCTAATCGCAAATGTGACCGTGGCGTTTCACGGAGGCAACGACGGTGC 1439
Query 1443 TCAGATAGCACTTTCCGGATGCTACGCAGGCCCGCTATTCAACACGGTAATTGGACTAGG 1502
||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1440 TCAGATAGCCCTTTCCGGGTGCTATGCAGGTCCGCTATTCAACACGGTAATTGGACTAGG 1499
Query 1503 TGTGCCACTTGTCATCTCCTCGTTGGCCGAATACCCCGGGGTCTACATCATTCCTAGTGA 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGTGCCACTTGTCATCTCCTCGTTGGCCGAATACCCCGGGGTCTACATCATTCCTAGTGA 1559
Query 1563 CAATTCGTTGCTTGAGACACTAGGGTTCTTAATGGTAGGCTTGCTTTGGGCACTTGTGAT 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CAATTCGTTGCTTGAGACACTAGGGTTCTTAATGGTAGGCTTGCTTTGGGCACTTGTGAT 1619
Query 1623 AATGCCAAAGAAGAAGATGAGACTTGATAAGCTTGTCGGTGGGGGCTTACTCGCTATTTA 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AATGCCAAAGAAGAAGATGAGACTTGATAAGCTTGTCGGTGGGGGCTTACTCGCTATTTA 1679
Query 1683 CCTCTGTTTCTTGTCCTTGAGGTTGGCTAGAGTTTTCGGAGTCCTTGATACCGACCGGTG 1742
||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1680 CCTCTGTTTCTTGTCTTTGAGATTGGCTAGAGTTTTCGGAGTCCTTGATATCGACCGGTG 1739
Query 1743 AATTTTATAGTAATGTAAATTTTGT---TTTA-TTTG-TT-TTT--GTAATAGTAGTTAA 1794
||||| ||||||||||||||||| | ||| |||| || ||| |||||| |||||||
Sbjct 1740 AATTT-ATAGTAATGTAAATTTTTTAAATTTTGTTTGGTTGTTTTTGTAATAATAGTTAA 1798
Query 1795 TTCTTAAAGaaaaaaaTTGCAAATAGGTCAAATTTGTGGGTCTTAATTTATTCCTTAAAT 1854
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TTCTTAAAGACAAAATTTGCAAATAGGTCAAATTTGTGGGTCTTAATTTATTCCTTAAAT 1858
Query 1855 GAAAAGATACTTTGTGCATAGTT-GAATTACTATCGAGAGGGATGGCTAAATTTGTTTTG 1913
||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 1859 GAAAAGAAACTTTGTGCATAGTTTGAAT-ACTATCGAGAGGGATGGCTAAATTTGTTT-G 1916
Query 1914 TTGCTGAACACTCATTTTCTGTCAAACTCACTTAGTACCTCACTAAAATTAAAAAA-GCT 1972
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1917 TTGCTGAACACTCATTTTCTGTCAAATTCACTTAGTACCTCACTAAAATTAAAAAAAGCT 1976
Query 1973 TTGGATTGTTGTTCT 1987
|||||||||||||||
Sbjct 1977 TTGGATTGTTGTTCT 1991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74694970445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5