BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G17870.1

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488653 jgi|Araly1|488653|fgenesh2_kg.6__1787__AT5G17870.1         601    2e-171


> Ahg488653 jgi|Araly1|488653|fgenesh2_kg.6__1787__AT5G17870.1
Length=461

 Score =  601 bits (325),  Expect = 2e-171
 Identities = 378/402 (94%), Gaps = 9/402 (2%)
 Strand=Plus/Plus

Query  29   AAGATAAGGAAACCATGTCTGTGTCAGCGATCTTTGGTACCGGAATCGTCACCGTTGCTG  88
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1    AAGATAAGGAAACAATGTCTGTGTCAGCGATCTTTGGTACCGGAATCGTCACCGTCGCTG  60

Query  89   CTTCTCCGGTTCTCCGCCAATTTCAAGTTCCAAAATTGGGTAATGGAGGAGGATTAGGGA  148
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   CTTCTCCGGTTCTCCGCCAATTTCAAGTTCCGAAATTGGGTAATGGAGGAGGATTAGGGA  120

Query  149  TGGTGATAGAGTGTTCGTCGAGGCCACAGAAGAAATCGACGGCTCATCACAGGAAGACGA  208
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  TGGTGATTGAGTGTTCGTCGAGGCCACAGAAGAAATCGACGGCTCATCACAGGAAGTCGA  180

Query  209  GGCCGAAGAAGACTCAGCCTTGGGACATTAAGAGAAAGCCTACTGTTTACGCTCCTCTTC  268
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  181  GGCCGAAGAAGACTCAGCCTTGGGACATTAAGAGAAAGCCTACTGTTTATGCTCCTCTTC  240

Query  269  CTCCTCTTCCGGCGGAATGGAGTCCGT-TCACTCTCGCTTCTGACGACGGTGGTGCTGCC  327
            ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||| |||
Sbjct  241  CTCCTCTTCCGGCGGAATGGACTCCGTAT-ACTCTTGCTTCTGACGACGGTGGTGCCGCC  299

Query  328  ACTGCTGC----G--GGAGATTTGGTTTCAGGCGCTGCCTAGTTGGTATGAGTTATCTGC  381
             | ||| |    |  |||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  300  GCCGCTTCTCCTGCCGGAGATTTGGTTTCAGGCGCTGCCTAGTTA-TATGAGTTATCTGC  358

Query  382  TGATTTGGTTGTAATCTAgtttgagaacttttgttgttgttt  423
            || ||||||||||||||||||||||||||||||||| |||||
Sbjct  359  TGGTTTGGTTGTAATCTAGTTTGAGAACTTTTGTTGGTGTTT  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20489551293


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5