BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17880.1
Length=3597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893705 jgi|Araly1|893705|Al_scaffold_0006_1701 1476 0.0
Ahg941307 jgi|Araly1|941307|scaffold_601851.1 861 0.0
Ahg915595 jgi|Araly1|915595|Al_scaffold_0008_346 110 1e-22
> Ahg893705 jgi|Araly1|893705|Al_scaffold_0006_1701
Length=3507
Score = 1476 bits (799), Expect = 0.0
Identities = 2388/3125 (76%), Gaps = 230/3125 (7%)
Strand=Plus/Plus
Query 36 CGGTGAGACACCCCAAGATCAAGTGTTCATTAATTTCCGTGGAGTCGAACTGCGCAAGAA 95
|||| || || ||||||| |||||||||||||| ||||| ||||| |||||||| | ||
Sbjct 12 CGGTAAGCCATCCCAAGACCAAGTGTTCATTAACTTCCGGGGAGTGGAACTGCGGTACAA 71
Query 96 CTTCGTCAGTCATCTGGAGAAGGGCTTAAAAAGGAAA-GGGATCAATGCCTTCATAGACA 154
||| || |||||||| ||||||||||||||| |||| || ||||||||||| |||||||
Sbjct 72 CTTTGTGAGTCATCTCAAGAAGGGCTTAAAAA-GAAATGGAATCAATGCCTTTATAGACA 130
Query 155 CAGATGAAGAGATGGGCCAAGAGTTGAGTGTTCTGCTCGAAAGAATAGAAGGTTCGAGGA 214
|||||||||| ||||||||||| |||| | |||||||| ||||||| |||||||||| ||
Sbjct 131 CAGATGAAGATATGGGCCAAGAATTGAATATTCTGCTCAAAAGAATCGAAGGTTCGAAGA 190
Query 215 TCGCGCTAGCCATTTTCTCTCCAAGGTACACGGAGTCAAAATGGTGTTTGAAGGAGCTTG 274
| || ||||| || ||||| || |||||||| |||||| | |||||| |||||||||| |
Sbjct 191 TAGCTCTAGCGATATTCTCCCCGAGGTACACAGAGTCAGACTGGTGTCTGAAGGAGCTGG 250
Query 275 CGAAGATGAAAGAAAGAACGGAACAAAAGG--AGCTCGTGGTGATTCCAATCTTCTACAA 332
| || ||||| ||| | | ||| | |||| |||||||||||||||||||||| |||||
Sbjct 251 CTAAAATGAAGGAATGCAGGGAGC--AAGGCAAGCTCGTGGTGATTCCAATCTTTTACAA 308
Query 333 GGTACAGCCCGT-CACTGTT-AAAGAATTGAAGGGAGACTTCGGGGATAAGTTCAGGGAG 390
||| || || | ||||||| |||| | ||| || || ||||| || || ||||||||
Sbjct 309 GGTTGAG-CCTTCCACTGTTAAAAG-ACAGAAAGGCGAGTTCGGTGACAATTTCAGGGAT 366
Query 391 C-TGGTGAAGTCTACTGACAAGAAGACGAAGAAAGAA-TGGA-AGGAAGCTTTACAA-TA 446
| || || ||| || ||| || |||| ||| || || |||| | ||||||||| || |
Sbjct 367 CTTGTTG-AGTTTATTGATGAGGAGACCAAG-AACAACTGGACA-GAAGCTTTA-AAGTC 422
Query 447 TGTTCCAT-TTTTAACCGGCATCGTGTTGGATGAGAAAAGCGATGAGGACGAAGTCATCA 505
| |||| | | ||||| || ||||||| | ||||| ||||| |||||||| |||||
Sbjct 423 TATTCC-TCTCTTAACGGGTTTCGTGTTAAACGAGAATAGCGACGAGGACGATCTCATC- 480
Query 506 AT-ATAA-TTATC-CGAAAGGTTAAAGAAATAC--TAAATAGAC-GTTCAGAGGG-TCCT 558
| | || || || | || ||| |||||| | | |||| | |||| ||| |||
Sbjct 481 TTCA-AAGTTGTCAAGGAA-GTT-AAGAAA-GCGTTGAATA-TCATTTCA-CGGGCACCT 534
Query 559 CCT--T---CTA-AATGTTCTGCACTACCGCCCCAAAG-ACACCAGAAACGTCATGAAAC 611
||| | ||| || || ||| || | | | | || |||||||||| | ||| |
Sbjct 535 CCTAATCGCCTAGAAGGTACTGTTCTTTC-CTCGACAGTACACCAGAAAAAACTTGAGA- 592
Query 612 CTT-TTGGGGAATCGAGC-TCCGAATTAAGCAACTAGAAGAAAAGTTACGTTTTGGGTCG 669
|| || ||| | || | | || | |||||||| |||||||||||| | || ||||
Sbjct 593 GTTCGTGTGGAGTTGA-CTTACGTCTAAAGCAACTTGAAGAAAAGTTAAGCTTCGGGTTT 651
Query 670 GACGAAACAACTCGTACCATCGGTGTTGTTGGGATGCCCGGTATAGGTAAAACCACTCTC 729
|| || |||||||||| ||| || |||||||||||||| || || |||||||| |||||
Sbjct 652 GAGGACACAACTCGTATCATTGGGGTTGTTGGGATGCCTGGCATTGGTAAAACTACTCT- 710
Query 730 GCT-ACGATGCTATATGAG-AAGTGGAATGATA-G-ATTCCTGAGACACGTGTTAATCCG 785
| | | || | |||| ||| || | || || | | |||| |||| |||||||||||||
Sbjct 711 GGTCAAGAAGTTATACGAGAAACT-CAA-GA-ACGAATTCTTGAGCCACGTGTTAATCC- 766
Query 786 T-GATATCCATGAAGCTTC-AGAGGAAGACGGGTTAAATTACTTGGCCACGAA-ATTCTT 842
| |||||||||||| |||| || |||| | || || | ||||||| |||| || | ||||
Sbjct 767 TAGATATCCATGAAACTTCAAG-GGAACAAGGCTTGAGTTACTTGCCCAC-AATACTCTT 824
Query 843 GCAAGGTTTATTGAAAGTTGAGAATGCCAACATCGAGTCCGTACAAGCTGCTCATGAAGC 902
| ||| |||| | ||||| ||||| ||| | ||| |||| || |||||||||||||
Sbjct 825 GGAAGATTTACTCAAAGTCAAGAATCCCATGTTTGAGACCGTCCAGGCTGCTCATGAAGG 884
Query 903 TTACAAAGATCAGTTACTCGAGACCAAAGTC-CTTGTTATTCTTGACAATGTCAGTAACA 961
|||||| ||||| ||||| | |||||| || |||||||| || ||| |||| |||||||
Sbjct 885 TTACAAGGATCAACTACTCAAAACCAAA-TCACTTGTTATACTCGACCATGTTAGTAACA 943
Query 962 AGGACCAAGTTGATGCTCTTCTTGGCGAACGCAACTGGATTAAGA-AAGGAAGCAAGATT 1020
|||| ||| ||| |||| | || ||| || | | |||||||| | | || ||||||| |
Sbjct 944 AGGAACAAATTGCTGCTATACTCGGCAAATGTGATTGGATTAA-ACAGGGGAGCAAGA-T 1001
Query 1021 C-TCATTACTACAAGCGACAAGTCATTGATGATACAAAG-TTTGGTCAATGATACTTACG 1078
| ||||| | ||| | || | ||| |||||| | | ||||||| |||||| ||||
Sbjct 1002 CGTCATTGCAACAGGTGATACGTC---CCTGATAC-ATGATTTGGTCGATGATATTTACC 1057
Query 1079 AAGTCCCTCCATTAAGCGACAAAGA-TGCCATAAAACATTTTATACGTTACG-CATTTGA 1136
||||||||| ||||||| | ||||| | || |||| |||| | ||| | || |||
Sbjct 1058 AAGTCCCTCAATTAAGCTATAAAGACAG-TTTACAACAATTTACCCATTATGCCA-TTGG 1115
Query 1137 TGGTAACGAAGGAGCTGCTCCCGGCCCCGGGCAAGGAAATTTCCCCAAGTTGTCGAAAGA 1196
| | | | || ||| | | | | | | | |||| ||| |||||| |||
Sbjct 1116 T-G-ATC-AA--AGC-AAT----G---C--TC-A-G-AGTTTCTTGAAGCTGTCGATAGA 1157
Query 1197 TTTCGTGCATTATACTAAAGGAAATCCACTAGCTCTCCAGATGTTGGGTAAGGAGCTTTT 1256
|||||||||||| || |||||||||||||||||||| || | |||||| |||||| |
Sbjct 1158 TTTCGTGCATTACACCAAAGGAAATCCACTAGCTCTAAAGGTATTGGGTGCTGAGCTTCT 1217
Query 1257 GGGGAAAGATGAGAGTCACTGGGGCTT-AAAACTAAATGCAT-TGGA-TCAACACCATAA 1313
||||||||| ||| || || || || |||| | || | | | || ||| ||||||||
Sbjct 1218 GGGGAAAGACGAGTCTCTCT-GGAATTCAAAATTGGATTC-TCT-GAGTCAGCACCATAA 1274
Query 1314 CA-GTC---C----A-C-CT-----G----GA-CA-A-AGCAT-TTGCAAGATGCTTCAA 1350
| ||| | | | || | || || | ||| | | | |||||||||||
Sbjct 1275 -AGGTCGAGCAAGAAGCTCTAGAAAGATACGAGCACAGAGC-TCTAGTGAGATGCTTCAA 1332
Query 1351 AGGGTCTGGGAAGGGAGTTATAAAGCACTGAGTCAAAAAGAAAAAGATGCACTTCTTGAC 1410
|| || ||| ||| | | ||| | | || ||||| || || ||||| |||||||||||
Sbjct 1333 AGTGTTTGGAAAGAGTGCTATGATGGTCTTAGTCAGCAACAACAAGATACACTTCTTGAC 1392
Query 1411 ATAGCTTGCTTCAGGTCGCAAGATGAGAATTACGTAGCGAGTTTATTGGATT--CA-GAT 1467
||||||||||||||||||| || ||||||| ||||| |||||||| |||| || |||
Sbjct 1393 ATAGCTTGCTTCAGGTCGCTGGACAAGAATTATGTAGCAAGTTTATTAGATTCACATGAT 1452
Query 1468 G-----GCC-CT--AG-TA--A-T-ATATTG-GAAGATCTCGTGAACAAG-TTCATGATT 1512
| || || || || | | | || | ||| | || |||||||| ||| |||||
Sbjct 1453 GCAAATTCCACTGAAGCTAGGATTGAAATCGAGAA-A-CTAATGAACAAGTTTC-TGATT 1509
Query 1513 AATATTTATGCTGGCAAAGTAGATATGCATGATACATTGTATATGCTCTCCAAGGAACTT 1572
| ||| | ||| |||||| |||| |||||||||||| | ||||| | | |||||| ||
Sbjct 1510 ACTATATCTGCCGGCAAAATAGAGATGCATGATACACTACATATGTTTTGTAAGGAAGTT 1569
Query 1573 GGTCGAGAAGCTACTGCTACAGATAGAAAGGGGCGGC-ATAGGTTGTGGCACCATCACAC 1631
||| | ||||| || ||| ||||| |||| |||| || | ||||||||| || |||| ||
Sbjct 1570 GGTAGGGAAGCCACAGCTCCAGATGGAAAAGGGCTGCGA-AGGTTGTGGGACTATCATAC 1628
Query 1632 CATAATTGCTGTGCTGGACAAAAACAAGGGAGGTTCTAATATCAGGTCTATTTTCCTTGA 1691
||||||| |||| | || || || |||||| ||| | | |||| || |||||||||||
Sbjct 1629 GATAATTGATGTGTTAGAGAACAATAAGGGA-GTT-T-CTGTCAGATCCATTTTCCTTGA 1685
Query 1692 CTTGTCTGATATT-ACAAGAA-AATGGTGCTT-CTATC-GCCATGCTTTTGCCATGATGA 1747
||| ||||| || ||| ||| ||| |||| | | | | || || ||| | ||||||
Sbjct 1686 TTTGGCTGATCTTAACATGAATAAT--AGCTTAC-A-CAGTCAAGCATTTAACTTGATGA 1741
Query 1748 GGGATCTAAGATAT-CTCAAAATCTACAGCACTCATTGTCCTCAAGAATGTGAAAGTGAC 1806
| || || | | | ||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 1742 GCAATATACGGT-TCCTCAAAATCTACAACACTTGTTGTCCTCAAGAATGTGACCGTGAC 1800
Query 1807 ATTA-AATTAAACTTCCCCGAAGGACTCCTGCTACC-GTTGAATGAGGTGCGATATCTCC 1864
|||| | ||| ||||| || || ||| ||| || ||| ||||| |||||| |||||
Sbjct 1801 ATTATGCTGAAA-TTCCCGGATGGGCTCGAGCTCCCATTTG-ATGAGCTGCGATGTCTCC 1858
Query 1865 ACTGGCTGAAATTCCCGTTAAAAGAAGTTCCACAAGATTTCAACCC-GGGTAAT-TTGGT 1922
|||||||||||||||| | ||||||||||||| ||||||| |||| | ||| || ||
Sbjct 1859 ACTGGCTGAAATTCCCACTGAAAGAAGTTCCACCAGATTTCGACCCAAAG-AATCTT-GT 1916
Query 1923 TGACCTTAAGCTTCCTTATAGCGAGATTGAACGAGTTTGGGAAGATAACAAGGATGCA-C 1981
||||||||||||| ||| ||||||||||||||||||||||| | ||| ||||||||| |
Sbjct 1917 GGACCTTAAGCTTCATTACAGCGAGATTGAACGAGTTTGGGAGGGTAATAAGGATGCATC 1976
Query 1982 CAAAATTAAAATGGGTAAACTTAAATCACTCAAAG-AAGTTGAACACTTTGGCAGGGTTA 2040
||| || |||||| || |||| || ||||| ||| |||||| || ||| |||| |||
Sbjct 1977 GAAACTT-AAATGGATAGACTTCAACCACTC-AAGAAAGTTGTGTACCTTGTCAGGATTA 2034
Query 2041 GGAAAAGCTCAAAATCTTCAAGAGCTAAATCTTGAAGGTTGCACGGCATT-GAAAGAGAT 2099
| | |||| |||||||||||| | || |||||||| |||| ||||| | | | |
Sbjct 2035 GCCGAGGCTCGAAATCTTCAAGAATTGAACCTTGAAGGCTGCATAGCATTGGCCACA-TT 2093
Query 2100 GCATGTGGATATGGAAAATATGAAGTTTCTTGTTTTCTTGAACCTGAGAGGATGCACAAG 2159
|| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 2094 GCCCCAGGATATGGAAAATATGAAGTGTCTTGTTTTCTTGAACCTCAGAGGCTGCACAAG 2153
Query 2160 TCTCAAGTCTCTTCCAGAGATTCAGTTGATCTCTTTGAAAACTCTCATCCTCAGTGGCTG 2219
|||||||| ||||||||||||| | ||||| ||| || |||||||||||||||| | |||
Sbjct 2154 TCTCAAGTATCTTCCAGAGATTAACTTGATATCTCTGGAAACTCTCATCCTCAGCGACTG 2213
Query 2220 CTCAAAATTTAAAACCTTTCAGGTTATTTCAGATAAGCTGGAAGCACTATACTTGGATGG 2279
||||||||||| ||| |||| |||||||| ||||| |||||| |||||||||||||
Sbjct 2214 TTCAAAATTTAAGGTATTTAAGGTGATTTCAGAAAAGCTAGAAGCAATATACTTGGATGG 2273
Query 2280 AACTGCAATAAAGGAACTTCCTTGTGACATTGGGAGA-CTCCAAAGACTTGT-TATGTTG 2337
||||| |||||||||||||||| ||||||| ||| | |||||||||||||| | | ||
Sbjct 2274 CACTGCGATAAAGGAACTTCCTTCTGACATTCGGA-ATCTCCAAAGACTTGTCT-TATTA 2331
Query 2338 AACATGAAAGGCTGCAAGAAGCTGAAAAGGCTCCCTGACAGTCTTGGTC-AGCTGAAAGC 2396
|||||||||||||||||||||||||||| || |||||||||||||| | | || |||||
Sbjct 2332 AACATGAAAGGCTGCAAGAAGCTGAAAACACTTCCTGACAGTCTTGG-CGAACTAAAAGC 2390
Query 2397 TCTTGAAGAACTTATCCTCTCTGGTTGTTCAAAGCTCAATGAGTTT-CCAGAAACTTGGG 2455
|||| ||||||| || |||||||| |||||||||||||| ||||| |||||| ||| |
Sbjct 2391 TCTTCAAGAACTGATACTCTCTGGCTGTTCAAAGCTCAAA-AGTTTTCCAGAAG-TTGCG 2448
Query 2456 GAAA-CATGAGCCG-CTTAGAGATCTTGCTTCTGGATGAGACAGCTATAAAAGATATGCC 2513
||| ||||| ||| || |||||| || ||||| ||||| |||||||| ||||| |||||
Sbjct 2449 AAAAACATGAACCGTCT-AGAGATTTTACTTCTAGATGAAACAGCTATCAAAGAAATGCC 2507
Query 2514 GAAGATACTCTC-CGTGCG-T-CGTTTATGCTTAAACAAGAA-TGAAAAGATCA-GCCGC 2568
|| ||| |||| | |||| | | || |||| ||| | ||| ||||||||| | |||||
Sbjct 2508 AAATATATTCTCTC-TGCGGTAC-TT-ATGCCTAAGTA-GAAATGAAAAGAT-ATGCCGC 2562
Query 2569 CTTCCAGATCTCCTCAATAAATTTTCTCAACTTCAATGGCTTCATTTGAAGTATTGTAAG 2628
|| ||||| | ||| ||||||||| ||| |||||||| || ||||||| |||||
Sbjct 2563 CTCCCAGAGAACATCAGCCAATTTTCTCGACTGAAATGGCTTGATATGAAGTACTGTAA- 2621
Query 2629 AATC-TTACACATGTTCC-ACAGCTTCCACCAAATCTTCAGTATTTAAACGTTCATGGTT 2686
|| | ||||| || |||| | ||||||||||||| ||||| | ||| | | ||||| |
Sbjct 2622 AAGCCTTACATATCTTCCTA-AGCTTCCACCAAACCTTCAATGCTTAGATGCACATGGAT 2680
Query 2687 GTAGCTCACTGAAGA-CAGT-TGCAAAACCGCTGGTA--TGTTCTATACCGAT-GAAGCA 2741
||||||||||||| | || | ||||| || || | | |||| || ||| || |||
Sbjct 2681 GTAGCTCACTGAAAAGCATTGTGCAA--CCACTTGCACATGTT--ATGGCGACAGA-GCA 2735
Query 2742 TGT-CAATTCCTCGTTCATTTTCACTAACTGCAATGAATTGGAACAAGCTGCAAAGGAGG 2800
| | || |||| | || |||||||| || ||| | ||||||||||||||||||||||||
Sbjct 2736 TATTCA-TTCCACTTTTATTTTCACGAAGTGCGACAAATTGGAACAAGCTGCAAAGGAGG 2794
Query 2801 AAATTGT-A-G-TATATGCTGAAAGGAAGTGTCATTTGCTTGCTAGTGCGCTTAAACGAT 2857
||||| | | | ||| | || ||||||| ||||| | || | ||||| ||||||| |
Sbjct 2795 AAATT-TCAAGCTAT-T-CTCAAAGGAAATGTCAGATACTACCAAGTGCACTTAAACTCT 2851
Query 2858 GCGATGAGAGTTGT-GTTCCTGAGATTTTGTTCTGCAC-TAGCTTTCCTGGATGTGAAAT 2915
|| || || | | | |||||||||||||||||| |||| | ||||||||||| |||||||
Sbjct 2852 GCAATAAG-GATCTTGTTCCTGAGATTTTGTTCAGCACCT-GCTTTCCTGGAGGTGAAAT 2909
Query 2916 GCCTTCATGGTTT-AGTCACGATGCAATTGGATCTATGGTGGAGTTTGAATTACCTCCT- 2973
||| |||||||| | |||| | ||||||||||||| ||| ||||||||| || ||
Sbjct 2910 ACCTCCATGGTTTTA-TCACCAAGCAATTGGATCTAAGGTAAAGTTTGAATCGCC-CCAA 2967
Query 2974 CACTGGAA-TCACAATAGGCTTTCTGGGATAGCCCTATGTGTTGTTGTCTCATTC-AAGA 3031
|| ||||| | |||||| ||| |||||||||||| | |||| ||||||||||||| || |
Sbjct 2968 CATTGGAAGT-ACAATAAGCTCTCTGGGATAGCCTTTTGTGCTGTTGTCTCATTCCAA-A 3025
Query 3032 ACTGT 3036
|||||
Sbjct 3026 ACTGT 3030
> Ahg941307 jgi|Araly1|941307|scaffold_601851.1
Length=965
Score = 861 bits (466), Expect = 0.0
Identities = 595/654 (91%), Gaps = 21/654 (3%)
Strand=Plus/Plus
Query 2866 AGTTGTGTTCCTGAGATTTTGTTCTGCACTAGCTTTCCTGGATGTGAAATGCCTTCATGG 2925
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 322 AGTTCTGTTCCTGAGATTTTGTTCTGCACTAGCTTTCCGGGATGTGAAATGCCTTCATGG 381
Query 2926 TTTAGTCACGATGCAATTGGATCTATGGTGGAGTTTGAATTACCTCCTCACTGGAATCAC 2985
||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 382 TTTTCTCACGACGCAATTGGATCTATGGTGGAGTTCGAATTACCTCCTCACTGGAATCAC 441
Query 2986 AATAGGCTTTCTGGGATAGCCCTATGTGTTGTTGTCTCATT-CAAGAACTGT-AAAAGTC 3043
|||||||||||||||||||| || ||||||||||||||||| ||| |||||| |||| ||
Sbjct 442 AATAGGCTTTCTGGGATAGCTCTTTGTGTTGTTGTCTCATTCCAA-AACTGTCAAAA-TC 499
Query 3044 ATGCCAACTTGATAGTCAAGTTCTCTTGTGAG-CAAAATAACGGAGAGGGCTCTTCCAGC 3102
|||||||||||| ||||||||||||||||||| ||||| || |||||| |||||| || |
Sbjct 500 ATGCCAACTTGACAGTCAAGTTCTCTTGTGAGCCAAAA-AATGGAGAGAGCTCTTGCACC 558
Query 3103 AGCATTACTTGGAAGGTTGGAAGTTTGATTGAACAAGACAACCAAGAAGAAACAGTTGAA 3162
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AGCATTACTTGGAAGGTTGGAAGTTTGATTGAACAAGACAACCAAGAAGAAACAGTTGAG 618
Query 3163 TCAGATCATGTCTTTATTGGCTACACCAACTGCTTAGACTTCATAAA-ACTTGTTAAAGG 3221
|||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||
Sbjct 619 TCAGATCATGTCTTTATTGGCTACACCAACTGCTTAGATTTCATAAAGA-TTGTTGAAGG 677
Query 3222 CCAAGGTGGTCCTAAATGTGCTCCGACCAAAGCATCCCTTGAGTTTAGTGTGAGAACTGG 3281
||||||| || |||||||||||||||||| ||||| || ||||||||||||| ||||||
Sbjct 678 CCAAGGTCCTCGTAAATGTGCTCCGACCAAGGCATCACTGGAGTTTAGTGTGACAACTGG 737
Query 3282 TACTGGTGGGGAAGCTACGCTTGAAGTTTTGAAATCCGGTTTCAGTTTTGTGTTTGAACC 3341
|||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TACTGGCGGGGAAGCTAGGTTTGAAGTTTTGAAATCCGGTTTCAGTTTTGTGTTTGAACC 797
Query 3342 TGAAGAGAACAGAGTTCCATCCCCAAGGAATGATGATGTAAAAGGTAAAGTAAAAATCAA 3401
|||||||||||||||||||| ||||||||||||||| || ||||||||| | |||
Sbjct 798 TGAAGAGAACAGAGTTCCATTCCCAAGGAATGATGAAGTCAAAGGTAAA--A-----CAA 850
Query 3402 CAAAACTCCAAGTGCTAATGGTTGTTTCAAGGATCAAGCAAAAGGTAATGAATCTCCAAA 3461
|||| | || ||||||||||||||||||||||||||||||||| |||||| ||| ||
Sbjct 851 -AAAA-T--AAC-GCTAATGGTTGTTTCAAGGATCAAGCAAAAGGTGATGAATATCCCAA 905
Query 3462 GGGCCAGTGGCAGACTTACATTGAAAACTCTAGCA-CTAACATCCCAAGTGAAG 3514
||||||||||||||| |||||||||| ||| ||| ||||||||||| ||||||
Sbjct 906 GGGCCAGTGGCAGACCTACATTGAAAGTTCTGGCAACTAACATCCCAGGTGAAG 959
Score = 462 bits (250), Expect = 7e-129
Identities = 282/298 (95%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 2517 GATACTCTCCGTGCGTCGTTTATGCTTAAACAAGAATGAAAAGATCAGCCGCCTTCCAGA 2576
|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 24 GATACTTTCAGTGCGTCGTTTATGCTTAAGCAAGAATGAAAAGATCAGCCGCCTTCCAGA 83
Query 2577 TCTCCTCAATAAATTTTCTCAACTTCAATGGCTTCATTTGAAGTATTGTAAGAATCTTAC 2636
|||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 84 TCTCATCAATAAATTTTCTCAACTGCAATGGCTTGATTTGAAGTATTGTAAGAATCTTAC 143
Query 2637 ACATGTTCCACAGCTTCCACCAAATCTTCAGTATTTAAACGTTCATGGTTGTAGCTCACT 2696
||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 144 ACATGTTCCTCAGCTTCCACCAAATCTTCAGTGTTTAAACGTACATGGTTGTTGCTCACT 203
Query 2697 GAAGACAGTTGCAAAACCGCTGGTATGTTCTATACCGATGAAGCATGTCAATTCCTCGTT 2756
|||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 204 GAAGACAGTTGCAAAACCACTGGTATGTTCTATACCGATGAAGCATATCAGTTCCACGTT 263
Query 2757 CATTTTCACTAACTGCAATGAATTGGAACAAGCTGCAAAGGAGGAAATTGTAGTATAT 2814
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 264 CATTTTTACTAACTGCAATGAATTGGAACAAGCTGCAAAGGAGGAAATTGTAGCATAT 321
> Ahg915595 jgi|Araly1|915595|Al_scaffold_0008_346
Length=1161
Score = 110 bits (59), Expect = 1e-22
Identities = 106/128 (83%), Gaps = 5/128 (4%)
Strand=Plus/Plus
Query 2590 TTTTCTCAACTTCA-ATGGCTTCATTTGAAGTATTGTAAGAATCTTACACATGTTCCACA 2648
||||| | |||| | |||||| | |||||||||| || || |||||||| ||||||| |
Sbjct 47 TTTTC-C-ACTTAACATGGCTGGACTTGAAGTATTCTACGAGTCTTACACTTGTTCCAGA 104
Query 2649 GCTT-CCACCAAATCTTCAGTATTTAAACGTTCATGGTTGTAGCTCACTGAAGACAGTTG 2707
| || ||||||||||||| || ||| | | || |||||||||||||||||||||||||
Sbjct 105 G-TTGCCACCAAATCTTCCCTACTTAGATGCACAGGGTTGTAGCTCACTGAAGACAGTTG 163
Query 2708 CAAAACCG 2715
||||||||
Sbjct 164 CAAAACCG 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135865535610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5