BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17890.1
Length=5082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496939 jgi|Araly1|496939|fgenesh2_kg.8__2755__AT5G66640.1 553 5e-156
Ahg496942 jgi|Araly1|496942|fgenesh2_kg.8__2758__AT5G66610.1 503 6e-141
Ahg915663 jgi|Araly1|915663|Al_scaffold_0008_414 401 2e-110
Ahg358896 jgi|Araly1|358896|fgenesh1_pg.C_scaffold_8002683 366 8e-100
Ahg918513 jgi|Araly1|918513|Al_scaffold_0008_3264 248 3e-64
Ahg915648 jgi|Araly1|915648|Al_scaffold_0008_399 244 4e-63
Ahg948513 jgi|Araly1|948513|scaffold_800400.1 156 2e-36
Ahg948486 jgi|Araly1|948486|scaffold_800373.1 115 3e-24
> Ahg496939 jgi|Araly1|496939|fgenesh2_kg.8__2755__AT5G66640.1
Length=1422
Score = 553 bits (299), Expect = 5e-156
Identities = 852/1106 (77%), Gaps = 90/1106 (8%)
Strand=Plus/Plus
Query 3827 ATCCTCAATGTTTCTGTTGCCTTCGTTGTCGGGAG-CCTA-TTGCTATGAACGAGATTTC 3884
|||||| || ||| |||||| ||| ||| | || || | ||||| || |||||||||
Sbjct 355 ATCCTCGATCTTTATGTTGCTTTCATTG-CCACAGACC-ATTTGCTCTGCACGAGATTTT 412
Query 3885 AGACTTAAGAGGAATGTATCACAAACCTTGCTACAAGGAGCT-CCGTCATCCG-AATTGC 3942
| | ||| |||| || ||||| | ||||||||| ||| | |||| || || || |||
Sbjct 413 A-A-AGAAG-GGAAGGTTTCACATAGATTGCTACAAAGAG-TACCGTAAT-CGCAACTGC 467
Query 3943 TATGTCTGCGaaaaaaaGATTCCTCGTACTGCGGAAGGT-TTA-A-AGTACCATGAGCAT 3999
||||||||| || ||||||||||| || | |||||||| | | | ||||| ||||||||
Sbjct 468 TATGTCTGCCAACAAAAGATTCCTTTTAATACGGAAGGTATAAGAGAGTACAATGAGCAT 527
Query 4000 CCGTTCTGGATGGA-AACATACTGCCCTTC-TCATGATGGTGATGGAACTCCCAAATGTT 4057
||||||||| ||| || |||||| || || |||||| | |||||||||| |||| ||||
Sbjct 528 TCGTTCTGGAAGGAGAA-ATACTGTCC-TCGTCATGACGATGATGGAACTGCCAAGTGTT 585
Query 4058 GTAGCTGTGAAAGATTAGAGCATTGCGGAAC-ACAGTATGTAATGCTTGCAGATTTTCGA 4116
| ||||||||||||||||||| | | ||||| | | ||||||||||||| || |||||
Sbjct 586 GCAGCTGTGAAAGATTAGAGCCTAGGGGAACGA-ACTATGTAATGCTTGGTGACTTTCGG 644
Query 4117 TGGCTATGTCGAGAATGTAT-GGA-CAGCGCGATTATGGATTCTGATGAATG-CCAACCT 4173
|||||||||| ||||||||| ||| ||||| | |||||||| || | ||| | ||| |||
Sbjct 645 TGGCTATGTCTAGAATGTATGGGATCAGCG-G-TTATGGATACTAACGAA-GTCCAGCCT 701
Query 4174 TTGCACTTTGAAATCCGTGAATTCTTTGAGGGCTTACACATGAAGATTGAGGAAGAATTT 4233
|||||||||||||||||||||||||| || ||||| | | ||| |||| ||||||||
Sbjct 702 TTGCACTTTGAAATCCGTGAATTCTTCGAAGGCTTGTTCTTCAAGGTTGACAAAGAATTT 761
Query 4234 CCTGTT-TAT-TTGGTGGAGAAA-AATGCTCTGAATAAAGCTGAG-AAGGAAGAGAAGAT 4289
|| || | | ||| || ||||| || || ||||||||||||||| ||| | ||||||||
Sbjct 762 TCTCTTCT-TCTTGTTG-AGAAACAA-GCGCTGAATAAAGCTGAGGAAG-AGGAGAAGAT 817
Query 4290 TGACAAACAGGGGGATCAGTGTCTGATGGTAGTCAGAGGTATTTGCCTATCTGAAGAGCA 4349
|||| | || || ||| | | | || ||||||| ||||| | |||||||||||
Sbjct 818 TGACTACCA------TC-GTG-CAGCCG-TAACCAGAGGTCTTTGCATGTCTGAAGAGCA 868
Query 4350 GATTGTCACAAGTGTC-TCACAAGGAGT-AAGGA-GGATGTTGAATAAGCAGATACTAG- 4405
|||||| ||||| | | | |||| | ||||| || | | | || ||| || ||
Sbjct 869 AATTGTCCCAAGTATAAT-A-AAGGGGCCAAGGATGGG-GCCGGACAATCAGCTAATAAC 925
Query 4406 ATACG--GTTACAGAGTCTCAAAGGGTT-GTTCGCAAGTGCGAGGTCACTGCAATTCTCA 4462
| || |||||||||||||||| || || || |||||||| |||| |||||||
Sbjct 926 AGACATAGTTACAGAGTCTCAAAAAGTGAGTG-GC---TGCGAGGTTACTGGGATTCTCA 981
Query 4463 TCTTATATGGGCTTCCTAGGTTACTCACAGGATATATCTTGGCCCATGAGATGATGCATG 4522
|| ||||||| |||||||||||| | ||||||||||||||||| || |||||||||||||
Sbjct 982 TCATATATGGACTTCCTAGGTTATTAACAGGATATATCTTGGCTCACGAGATGATGCATG 1041
Query 4523 CTTATCTTAGACTCAATGGTTACAGGAATCTTAACAT-G-GTTCTTGAAGAAGGATTATG 4580
||| ||| ||||||||||||| ||||||||||| | | ||| | ||||||||||| ||
Sbjct 1042 CTTGGCTTCGACTCAATGGTTATAGGAATCTTAAGTTAGAGTT-T-GAAGAAGGATTGTG 1099
Query 4581 CCAAGTGTTAGGC-TACATGTGGTTGGAGTGTCAGACATACGTTT-T--TGATACTGC-- 4634
||||| ||||||| | || ||||||||||| |||||||| | | | |||| ||||
Sbjct 1100 CCAAGCGTTAGGCCT-CAGGTGGTTGGAGTCTCAGACATTTGCATCTACTGATGCTGCTG 1158
Query 4635 CA-CAATAGcttcttcttcttcttcttcCC-GCACTCCTCTATCTACAACCACATCAAAG 4692
| | | ||||||||||||||||| ||| || ||||| | | | ||||| ||||||
Sbjct 1159 CTTCTGTCGCTTCTTCTTCTTCTTC--CCCTGC--TCCTCCAGCGGCTACCACGTCAAAG 1214
Query 4693 AAA-GT--TGACC-CA--TCTGATTTT-GAGAAGAGGCTGGTAAA-TTTCTGCAAGCATC 4744
||| | |||| | ||| ||||| ||||||| ||| ||| | ||| |||| | |||
Sbjct 1215 AAAAGCAGTGACGACTGGTCT-ATTTTCGAGAAGAAGCTCGTAGAGTTT-TGCATGAATC 1272
Query 4745 AGATAGAAACA-GATGAGTCACCATTCTTCGGTGACGGGTTCAGGA-AAGTTAACAAAAT 4802
|||| ||| | ||||| ||||| ||| |||| ||| |||| | ||||| || | ||
Sbjct 1273 AGATC-AAAGAAGATGATTCACCGGTCTACGGTCTCGGATTCAA-ACAAGTTTACGAGAT 1330
Query 4803 GATGGCCTCAAATAA-TCACAGCCTTAAGGATACCCTGAAAGAGATCATCAGCATTTCCA 4861
||||| ||||||||| | ||||| ||||||||||||| ||||||||| | ||| |||||
Sbjct 1331 GATGGTCTCAAATAACT-ACAGCATTAAGGATACCCTTAAAGAGATCGTTAGCGCTTCCA 1389
Query 4862 AGACTCCACAATATTCAAAGTTATGA 4887
| ||| ||| | |||||| ||| |||
Sbjct 1390 ATACTACACCAGATTCAACGTTTTGA 1415
> Ahg496942 jgi|Araly1|496942|fgenesh2_kg.8__2758__AT5G66610.1
Length=1746
Score = 503 bits (272), Expect = 6e-141
Identities = 742/957 (78%), Gaps = 80/957 (8%)
Strand=Plus/Plus
Query 3742 GTGAATCC-TCCTCTTAGCAAATG-CAAGGATTGCAAATCTGCAATTGAAGATGGAATAT 3799
||||| || ||||| ||||| ||| | || |||||| ||||| |||||| |||||| ||
Sbjct 589 GTGAA-CCATCCTCGTAGCATATGTCGTGG-TTGCAACTCTGCGATTGAATATGGAAGAT 646
Query 3800 CTATCAATGCCTACGGTTCTGTTTGGCATCCTCAATGTTTCTGTTGCCTTCGTTGTCG-G 3858
|| | ||||||| ||| | |||||||||| ||||||||||||| ||| ||| ||
Sbjct 647 CTGTTAATGCCTTGGGTGGTAATTGGCATCCTGAATGTTTCTGTTGTCTTTATTG-CGAC 705
Query 3859 GAGCCTATTGCTATGAACGAGATTTCAGACTTAAGAGGAATGTATCACA-AACCTTGCTA 3917
| || || |||||| ||||| ||| | || || ||| | || ||| | |||| |||||
Sbjct 706 AAACCAATCGCTATGCACGAGCTTTTAAACACAAAAGGGAGGTGTCATATAACC-TGCTA 764
Query 3918 CAAGGAGCTCCGTCATCCGAATTGCTATGTCTGCGaaaaa-aaGATTCC-TCGTACTGCG 3975
|||| || ||||| || || |||||||||||| ||||| ||| |||| || || | |
Sbjct 765 CAAGCAG---CGTCACCCAAACTGCTATGTCTGC-AAAAAGAAGTTTCCTTC-AACCGAG 819
Query 3976 GAAGGTTTAAAGTACCATGAGCA-TCCGTTCTGGATGGAAACA-TACTGCCCTTCTCATG 4033
|||||| | |||| | | || ||| ||||||| |||| | |||||||||| |||||
Sbjct 820 GAAGGTAGAGAGTATAAACAACATTCC-TTCTGGAAAGAAA-AGTACTGCCCTTTTCATG 877
Query 4034 ATGGTGATGGAACTCCCAAATGTTGTAGCTGTGAAAGATTAGAGCATTGCGGAAC-ACAG 4092
| | ||||||||||||||| ||||| || |||||||||||||||| || ||||| | ||
Sbjct 878 AAGTTGATGGAACTCCCAAGTGTTGCAGTTGTGAAAGATTAGAGCCCTGGGGAACGA-AG 936
Query 4093 TATGTAATGCTTGCAGATTTTCGATGGCTATGTCG-AGAATGTATGGACA-GCGCGA-TT 4149
|||||||||||| | || ||| |||||||| || | |||||||||| | |||| | ||
Sbjct 937 TATGTAATGCTTACTGACAATCGGTGGCTATG-CGTAAAATGTATGGA-ATGCGC-AGTT 993
Query 4150 ATGGATTCTGATGAATGCCAACCTTTGCACTTTGAAATCCGTGAATTCTTTGAGGGCTTA 4209
|||||| || ||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 994 ATGGATACTTATGAATGCCAACCTTTGCACTTTAAAATCCGTGAATTCTTCGAAAGCTTA 1053
Query 4210 CACATGAAGATTGAGGAAGAATTTCCTGTT-TATTTGGTGGAGAAA-AATGCTCTGAATA 4267
|||||||| ||||| ||||||||||| || | ||||||||||||| || || |||||||
Sbjct 1054 AACATGAAGGTTGAGAAAGAATTTCCTCTTCT-TTTGGTGGAGAAAGAA-GCGCTGAATA 1111
Query 4268 AAGCTGAGAAGGAAGAGAAGATTGACAAACAGGGGGATCAGTGTCTGATGGTAGTCAGAG 4327
|||||||| | |||| ||||||||||| || | || || || |||| |||||
Sbjct 1112 AAGCTGAGGTGCAAGAAAAGATTGACAATCA----G--CA-TG--GGACGGTAACCAGAG 1162
Query 4328 GTATTTGCCTATCTGAAGAGCAGATTGTC-ACAAGTGTC-TCACAAGGAGTAAGGA-GGA 4384
||||||| | ||||||||||||| |||| | || |||| | | |||| || | ||
Sbjct 1163 GTATTTGTTTGTCTGAAGAGCAGACTGTCAATAA-TGTCTTAAAAAGG-CCAAACATGG- 1219
Query 4385 TGTTGAATAA-GCAGATACTAGATACGGTTACAGAGTCTCAAAGGGTTGTTCGCAAG-TG 4442
| ||| || | || || | | | ||||||||| |||||||||||| || | | ||
Sbjct 1220 GGCCGAACAATG-AGCTAGTGGGCATGGTTACAGAATCTCAAAGGGTTATT-GGTGGTTG 1277
Query 4443 CGAGGTCACTGCAATTCTCATC-TTATATGGGCTTCCTAGGTTACTCACAGGATATATCT 4501
||||||| ||||||||| ||| || ||||| || ||||||||||| || ||||||||||
Sbjct 1278 TGAGGTCATTGCAATTCTTATCATT-TATGGACTGCCTAGGTTACTAACTGGATATATCT 1336
Query 4502 TGGCCCATGAGATGATGCATGCTTATCTTAGACTCAATG-GTTACA--G-GAATC-T-T- 4554
|||||||||||||||||||||||| || |||||||| | | ||| | ||| | | |
Sbjct 1337 TGGCCCATGAGATGATGCATGCTTGGCTAAGACTCAACGAG--ACATTGAGAAACCTCTC 1394
Query 4555 AACA-T----GGT-TCTTGAAGAAGGATTATGCCAAGTGTTAGGCTACATGTGGTTGGAG 4608
|| | | || ||| ||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1395 AA-AGTTAAAGGAATCT-GAAGAAGGAATATGCCAAGTGCTAGGCCACATGTGGTTGGAG 1452
Query 4609 TGTCAGACATACGT--T-TT-TG-ATACTGCCA-CAAT-AGcttcttcttcttcttc 4658
| ||||||||| | | || || | |||| | || | ||||||||||||||||||
Sbjct 1453 TCACAGACATAC-TCCTCTTCTGCAG-CTGC-ATCA-TCAGCTTCTTCTTCTTCTTC 1505
> Ahg915663 jgi|Araly1|915663|Al_scaffold_0008_414
Length=4083
Score = 401 bits (217), Expect = 2e-110
Identities = 1252/1733 (72%), Gaps = 145/1733 (8%)
Strand=Plus/Plus
Query 487 GACTCCGAACTAGTGGAAGAGATCGTCAGAGATGTTTATGGGAAG--C-TTTATCCTGCA 543
|||||| || | || ||||||| |||| |||||| |||| |||| | ||||| ||
Sbjct 376 GACTCCCAATTTGTAAAAGAGATTGTCAAAGATGTGTATGAGAAGCTCTTTTAT-ATG-- 432
Query 544 GAAC-GAGTTGGAATTTACGCGAGGCTACTAGAGA-T-AGAAAAGTTGCTTTACAAGCAA 600
|||| || ||||||| || | | ||| || |||| | |||||| || ||| |||||||
Sbjct 433 GAACGGA-TTGGAATCTATTCAAAGCTGCTGGAGATTGAGAAAA--TGGTTTGCAAGCAA 489
Query 601 -CATAGGGACATCCGAAGCATAGGAATTTGGGGTATGCCTGGCATAGGCAAGACGACGCT 659
| | ||| |||||| | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 490 CCGTTGGG-CATCCGTTGTGTTGGAATTTGGGGTATGCCTGGCATAGGCAAGACGACACT 548
Query 660 TGCTAAAGCAGTCTTTAATCACATGTCCA-CTGA-TTATGATGCTTCTTGCTTCATCGA- 716
||||||||| |||||| | || ||||| | || || |||||||||||| || |||||
Sbjct 549 TGCTAAAGCGGTCTTTGACCAAATGTCTGGC-GAATT-TGATGCTTCTTGTTTTATCGAA 606
Query 717 GAACTTTGATG-AA-GCTTTTCATA-AGGAGGGACTCCACCGTTTGCTCAAAGAA-AGAA 772
|| || | | | || ||| |||| | || |||| | | ||||||| | ||| ||
Sbjct 607 GA-CTAT-A-GCAAAGCTATTCA-AGAGAAGGGTGTTTATTGTTTGCTGGAGGAACAGTT 662
Query 773 TTGGTAAA-ATTCTAAAGGATGAGTT-TGACATAGAAAGTTCGTATA-TTATGAGACCGA 829
|| | ||| | ||| | || || || | | | || ||| ||| || || ||
Sbjct 663 TTTG-AAAGA----AAATGCTG-GTGGTG-C-T-G---GTG-GTACCGTTACGAAACTGA 709
Query 830 CCCTCCATAGGGACAAATTATACGATAAAAGGATTCTTGTTGTT-TTAGATGATGTGCGC 888
| | | ||| |||||||| || || | ||| ||||||||||| || ||||||||||||
Sbjct 710 GCTTGCTTAGAAACAAATTAAACAATCAGAGGGTTCTTGTTGTTCTT-GATGATGTGCGC 768
Query 889 GATTCC-CTTGCTGCAGAGTCCTTCCTTAAAAGGCTTGATTGGTTTGGTTCCGGAAGCCT 947
| ||| || | || ||||| || ||| | || |||| ||||||||| || ||||||
Sbjct 769 -AGTCCTCTGGTTGTGGAGTCTTTTCTTGGAGGGTTTGACTGGTTTGGTCCCAAAAGCCT 827
Query 948 TATAATCATAACCTCC-GTTGATAAACAAGTGTTT-GCCTTTTGTC-AGATCAATCAAAT 1004
|| ||||||||||| | |||||||| |||||| |||||| ||| || || |||||||
Sbjct 828 AATCATCATAACCTCTAGA-GATAAACAGGTGTTTCGCCTTT-GTCGAG-TCGATCAAAT 884
Query 1005 ATAC-ACGGTTCAAGGTTTAAATGTGCACGAGGCTCTGCAGCTTTTCTCCCAAAG--CGT 1061
||| | ||||| |||||||||| | | |||||||| ||||| ||||| | |||
Sbjct 885 ATATGA-GGTTCTGGGTTTAAATGAGAAAGAGGCTCTTCAGCTCTTCTCTTTTTGTGCGT 943
Query 1062 ATTTGGAATAAACGAGCCAGAGCAGAATGAC-AGGAAACTGTCAATGAAGGTGATTGACT 1120
| | || | | | || |||||||| | | | || |||||||||| ||| || | |
Sbjct 944 CTATAGACGATATG-GC-AGAGCAGAGTCTCCATGAGG-TGTCAATGAAAGTGGTTAAGT 1000
Query 1121 ATGTTAATGGAAACCCGTTAGCTCTCAG-CATTTACGGCCGAGAGCT-AATGGGGAAGAA 1178
||| | |||| | || ||||||||||| | | || ||| ||||||| || ||| || ||
Sbjct 1001 ATGCGAGTGGACATCCATTAGCTCTCAGTC-TCTATGGCAGAGAGCTGAA-GGGTAAAAA 1058
Query 1179 G----T-C-AGAAATGGAGACTGCATTCTTCGAGCTCAAGCATTGTCCTCC--CTTAAAG 1230
| | |||||||||||| ||||| |||| |||||| | |||||| || | |
Sbjct 1059 AACACTGCCAGAAATGGAGACAACATTCCTCGAACTCAAGGAACATCCTCCAACT-AT-G 1116
Query 1231 ATTCAGGATGTGCTAAAAAAC-GCTTAT-AGTGCACTTAGCGACAATGAGAAGAACATTG 1288
|| |||| | || | | ||| || | |||| | |||| || || ||||||
Sbjct 1117 TTTGTTGATGCAATCAAGAGCTGCT-ATGACA-CACTCAATGACAGGGAAAAAAACATT- 1173
Query 1289 TT-TTGGACATTGCTTTTTTCTTCAAGGGAGAAACTGTCAATTATGTGATGCAGCTGCTT 1347
|| |||||||| |||| |||||| ||||||||| |||| | || |||||||| ||||||
Sbjct 1174 TTCTTGGACATAGCTTGTTTCTTTGAGGGAGAAAATGTCGACTACGTGATGCAACTGCTT 1233
Query 1348 GAGGAATCTCATTACTTTCCACGTCTTGCAATAGATGTTCTTGTGGACAAGTGTGTGTTA 1407
|||| | | || |||||||| | ||| ||| ||||||||||| || |||||| || |
Sbjct 1234 GAGGGTTGTGGTTTCTTTCCACATGTTGGAATTGATGTTCTTGTCGAGAAGTGTCTGGTG 1293
Query 1408 ACTATCT-CAGAAAACACA-GTGCAAATGAATAATTTGATCCAAGACACCT-G-CCAAGA 1463
||||| | |||||||| || |||| ||| |||| ||||||||| | | | | || | |
Sbjct 1294 ACTAT-TACAGAAAAC-CAAGTGCGGATGCATAACTTGATCCAA-A-ATGTTGGCCGACA 1349
Query 1464 AATCTTCAATGGAGAAATT-GA--GACCT--G---CAC--CAGAATGTGGGAACCTTCCA 1513
||| | ||| |||||| || ||| | | | | |||| |||||||||||| |
Sbjct 1350 AATAATAAATAGAGAAACAAGACAGAC-TAAGAGGCGCGACAGACTGTGGGAACCTTGGA 1408
Query 1514 GAATCAGATATCTGCTAGAATATGATGAACTTGAAGGAAGTGGAGAA-ACCAAAGCAA-T 1571
| |||| |||| | ||||| || | | | ||| || ||||||| || ||| ||| |
Sbjct 1409 GCATCAAATATTTATTAGAAGATAACGGAGAAAAAGAAAATGGAGAACACAAAA-CAACT 1467
Query 1572 GCCTAAATCTGGTCTGGTCGCTGAACACATCGAAAGCATATTCCTGGACACTTCAAACGT 1631
|| || || || | ||||| | |||||| |||| || |||||||| |||||| |
Sbjct 1468 TTGGAACG-TGCTCAGGGCCCTGAAGAGATCGAAGGCATGTTTCTGGACACATCAAACTT 1526
Query 1632 GAAATTTGATGTCAAACAC-GATGCATTCAAGAATATGTTTAATCTCAAATTCCTAAAGA 1690
| |||||| | || | | | ||| || | |||||||| || || | ||| || ||||
Sbjct 1527 TAGTTTTGATATTAAGC-CTGCTGCCTTTGATAATATGTTGAACCTTAGATTGCTCAAGA 1585
Query 1691 TATACAATTC-A-TGCTCTAAA-TATATTTCTGGACTCAATTTTC-CAAAGGG-C-CTCG 1744
| |||| ||| | | | || || | || || | ||||| | |||||| | |||
Sbjct 1586 TTTACAGTTCCAAT-C-CTGAAGTCCATCA-TGTAAAGAATTTCCTCAAAGGCTCTCTCA 1642
Query 1745 ATTCTCTGCCTTATGAGCTAAGGCTCCTCCACTGGGAGAACTACCCTTTGCAATC-CTTG 1803
||||||| ||| |||||||||| |||||||| ||||||||||| ||| |||| | || |
Sbjct 1643 ATTCTCTTCCTAATGAGCTAAGACTCCTCCATTGGGAGAACTATCCTCTGCAGTTTCT-G 1701
Query 1804 CCTCAAGATTTTGA-CTT-TGGACACCTTGTT-AAGCTCAGTATGCCTTACAGCCAGCTT 1860
|| ||| ||||||| | | | |||||||||| || ||| ||||| |||||||| |||
Sbjct 1702 CCCCAAAATTTTGATCCTAT--ACACCTTGTTGAAA-TCAACATGCCGTACAGCCAACTT 1758
Query 1861 CATAAACTC-GGGACAAGAGTCAAGGACCTTGTGATGTT-AAAGAGGCTCATTCTTTCTC 1918
| ||||| ||| || |||| |||| | |||||| ||| | ||| |||| ||
Sbjct 1759 AAGAAACTTTGGGGTG-GAACCAAGAACCTGGAGATGTTGAAA-ACTATCAGGCTTTGTC 1816
Query 1919 ATTCTTTA-CAGCTAGTTGA-ATGTGAC-ATACTAATATATGCTCAAAATATCGAGCTAA 1975
|||| | || |||||||| || |||| || | || | ||||||||| | ||| |||
Sbjct 1817 ATTCCC-AGCAACTAGTTGATAT-TGACGATGTTT-TAAAAGCTCAAAATCTTGAGGTAA 1873
Query 1976 TTGATCTTCAAGGCTGTACAGGATTGCAAAGATTTCC-AGACACGAG-TCAATTAC-AGA 2032
||||||| ||||| |||||| || |||| || ||||| || ||| || |||||| | | |
Sbjct 1874 TTGATCTCCAAGGTTGTACAAGACTGCAGAG-TTTCCCAGCCAC-AGGTCAATTGCTACA 1931
Query 2033 ATCTCCGGG-TAGTAAATCTCTCAGGTTGCACAGAGATCAAATGTTTCTCAGGGGTTCCA 2091
||| || | ||||||||||| |||||||||||||||||| ||||| ||| | ||||
Sbjct 1932 -TCTACGAACT-GTAAATCTCTCTGGTTGCACAGAGATCAAAAGTTTCCCAGAGATTCCC 1989
Query 2092 CCAAATATTGAGGA-ATT-ACATCTCCAAGGAACTCGTATAAGGGAAATACCA 2142
|||||||||||| | | | | |||| || || ||| |||||| ||| |||||
Sbjct 1990 CCAAATATTGAG-ACACTGA-ATCTACAGGGGACTGGTATAATAGAATTACCA 2040
> Ahg358896 jgi|Araly1|358896|fgenesh1_pg.C_scaffold_8002683
Length=1257
Score = 366 bits (198), Expect = 8e-100
Identities = 426/530 (80%), Gaps = 40/530 (8%)
Strand=Plus/Plus
Query 4250 AGAAA-AATGCTCTGAATAAAGCTGAGAAGGAAGAGAAGATTGACAAACAGGGGGATCAG 4308
||||| || || || || |||||||| |||||||||||||||||||| | || |
Sbjct 749 AGAAAGAA-GCGCTTAACAAAGCTGAAAAGGAAGAGAAGATTGACAATC------ATTA- 800
Query 4309 TGTCTGATGG-TAGTCAGAGGTATTTGCCTATCTGAAGAGCAGATTGTCACAAGTGTCTC 4367
|| ||||| || ||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 801 TG--GGATGGCTA-CCAGAGGTATTTGCCTGTCTGAAGAGCAGATGGTCACAAGTGTTTC 857
Query 4368 -ACAAGGAGTAAGG---AGGAT---GTTGAATAAGCAG--A-TACTAGATACGGTTACAG 4417
| || | |||| ||||| | ||| || ||| | || |||| | ||| ||
Sbjct 858 AAAAATTA-AAAGGCAAAGGATGGGGCCGAACAAACAGCTAGTATTAGAGATAGTTCCAA 916
Query 4418 AGTCTCAAAGGGTTGTTCGCAAGTGCGAGGTCACTGCAATTCTCATCTTATATGGGCTTC 4477
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 917 AGTCTCAAATGGTTCTTCGAAAGTGCGAGGTCACTGCAATTCTCATCTTATATGGACTTC 976
Query 4478 CTAGGTTACTCACAGGATATATCTTGGCCCATGAGATGATGCATGCTTATCTTAGACTCA 4537
||||||| || ||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 977 CTAGGTTCCTAACAGGATATATCTTGGCTCATGAGATGATGCATGCGTGGCTTAGACTCA 1036
Query 4538 ATGGTTACAGGAATCTTA-ACATGGTTCTTGAAGAAGGATTATGCCAAGTGTTAGGCTAC 4596
| ||||| |||||||| | | |||||||| ||||||||||||||||||||||||||| ||
Sbjct 1037 AGGGTTATAGGAATCT-AGATATGGTTCTCGAAGAAGGATTATGCCAAGTGTTAGGCCAC 1095
Query 4597 ATGTGGTTGGAGTGTCAGACATACGTTTTTGATACTGCCACAATAGcttcttcttcttct 4656
|||||||||||| ||||||||||| || ||| | | |||| | | |||||
Sbjct 1096 ATGTGGTTGGAGCCTCAGACATACGCCA---ATCCTG--ATA-TAGCAGCAGCAGCTTCT 1149
Query 4657 tcttcCCGCACTCCTCTATCTACAACCACATCAAAGAAAGTTGACCCATCTGATTTTGAG 4716
||||| ||||||| || | ||||||||||||||||||||| ||| |||||||| | ||||
Sbjct 1150 TCTTCTCGCACTCTTCCAGCTACAACCACATCAAAGAAAGGTGAGCCATCTGAATATGAG 1209
Query 4717 AAGA-GGCTGGTAAA-TTTCTGCAAGCATCAGATA----GAAACAGATGA 4760
|| | |||| || || ||| |||||| |||||||| |||||||||||
Sbjct 1210 AA-ACGGCTCGTGAAGTTT-TGCAAGGATCAGATATATAGAAACAGATGA 1257
> Ahg918513 jgi|Araly1|918513|Al_scaffold_0008_3264
Length=2109
Score = 248 bits (134), Expect = 3e-64
Identities = 303/381 (80%), Gaps = 26/381 (7%)
Strand=Plus/Plus
Query 4480 AGGTTACTCACAGGATATATCTTGGCCCATGAGATGATGCATGCTTATCTTAGACTCAAT 4539
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1726 AGGTTACTAACAGGATATATCTTGGCTCATGAGATGATGCATGCTTATCTTAGACTCAGT 1785
Query 4540 GGTTACAGGAATCTTAACATGGTTCTTG-AAGAAGGATTATGCCAAGTGTTAGG-CTACA 4597
|| | ||||| || |||| || ||| |||||||| ||||||||||| |||| | |||
Sbjct 1786 GGACATAGGAACCTGAACAACATT-TTGGAAGAAGGACTATGCCAAGTGCTAGGTC-ACA 1843
Query 4598 TGTGGTTGGAGTGTCAGACATACGTTTTTGAT-ACTGCCAC---A-ATAGcttcttct-- 4650
|||||||||||| ||||||||||| || | | |||||| | || || || ||
Sbjct 1844 TGTGGTTGGAGTCTCAGACATACGCCACTGCTGA-TGCCACTGCAGAT-GCATCATCAGC 1901
Query 4651 -tcttcttcttcCCGCACTCCTCTATCTAC-AACCACATCAAAGAAAGTTGACCCATCTG 4708
|||||||||||||||||||||| | || | || | |||||||||| ||| ||||
Sbjct 1902 ATCTTCTTCTTCCCGCACTCCTCCAGCTGCTAATG-CGTCAAAGAAAGGTGAGTGGTCTG 1960
Query 4709 ATTTTGAGAAGAGGCTGGTAAA-TTTCTGCAAGCATCAGATAGAAACAGATGAGTCACCA 4767
|||| ||||||| ||||| ||| |||||| |||||||||| |||||||| ||||||
Sbjct 1961 ATTTCGAGAAGAAACTGGTGGGGTTT-TGCAAGAATCAGATAGAGACAGATGATTCACCA 2019
Query 4768 TTCTTCGGTGACGGGTTCAGGAAAGTTAACAAAATGATGGCCTCAAATAAT-CACAGCCT 4826
||| ||||| ||| ||||||| ||||||| | ||||| | ||| ||| | ||||||
Sbjct 2020 GTCTACGGTGTCGGATTCAGGACAGTTAACGA---GATGG--TGAAA-AATTC-CAGCCT 2072
Query 4827 TAAGGATACCCTGAAAGAGAT 4847
|||||||||| ||||||||
Sbjct 2073 CCAGGATACCCTCAAAGAGAT 2093
> Ahg915648 jgi|Araly1|915648|Al_scaffold_0008_399
Length=4014
Score = 244 bits (132), Expect = 4e-63
Identities = 698/959 (73%), Gaps = 87/959 (9%)
Strand=Plus/Plus
Query 487 GACTCCGAACTAGTGGAAGAGATCGTCAGAGATGTTTATGGGAAGCT-TTATCCTGCA-G 544
|||||| | || || ||||||| ||||||||||| |||| |||||| || | | | |
Sbjct 376 GACTCCCAGCTTGTAAAAGAGATTGTCAGAGATGTGTATGAGAAGCTCTT-TTAT-AAGG 433
Query 545 AACGAGTTGGAATTTACGCGAGGCTACTAGAGA-T-AGAAAAGTTGCTTTACAAGCAA-C 601
|||| ||||||| || ||| ||| || |||| | |||||| || ||| ||||||| |
Sbjct 434 GACGAATTGGAATCTATTCGAAGCTGCTGGAGATTGAGAAAA--TGGTTTGCAAGCAACC 491
Query 602 ATAGGGACATCCGAAGCATAGGAATTTGGGGTATGCCTGGCATAGGCAAGACGACGCTTG 661
| ||| |||||| | | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 492 GTTGGG-CATCCGTTGTGTTGGAATTTGGGGTATGCCTGGCATAGGCAAGACGACACTTG 550
Query 662 CTAAAGCAGTCTTTAATCACATGTCCA-CTGA-TTATGATGCTTCTTGCTTCATCGA-GA 718
||||||| |||||| | || ||||| | || || |||||||||||| || ||||| ||
Sbjct 551 CTAAAGCGGTCTTTGACCAAATGTCTGGC-GAATT-TGATGCTTCTTGTTTTATCGAAGA 608
Query 719 ACTTTGATG-AA-GCTTTTCATA-AGGAGGGACTCCACCGTTTGCTCAAAGAAAGAATTG 775
|| | | | || ||| |||| | || |||| | | ||||||| | ||| ||||
Sbjct 609 -CTAT-A-GCAAAGCTATTCA-AGAGAAGGGTGTTTATTGTTTGCTGGAGGAAC-AATTT 663
Query 776 GTAAAATTCTAAAGGATGAGTT-TGACATAGAAAGTTCGTATA-TTATGAGACCGACCCT 833
| ||| ||| | || || || | | | || ||| ||| || | || | |
Sbjct 664 TTGAAAGA--AAATGCTG-GTGGTG-C-T-G---GTG-GTACCGTTACGAAATTGAGCTT 713
Query 834 CCATAGGGACAAATTATACGATAAAAG-GATTCTTGTTGTTTTAGATGATGTGCGCGATT 892
| ||| ||||||||| || |||| || | ||||||||||| | ||||||||||| | |
Sbjct 714 GCTTAGAGACAAATTAAACAATAAGAGAG-TTCTTGTTGTTCTCGATGATGTGCGT-AGT 771
Query 893 CC-CTTGCTGCAGAGTCCTTCCTTAAAAGGCTTGATTGGTTTGGTTCCGGAAGCCTTATA 951
|| || | || ||||| || ||| | || |||| ||||||||| || ||| || ||
Sbjct 772 CCTCTGGTTGTGGAGTCTTTTCTTGGAGGGTTTGACTGGTTTGGTCCCAAAAGTCTAATC 831
Query 952 ATCATAACCTCC-GTTGATAAA-CAAGTGTTT-GCCTTTTGTC-AGATCAATCAAATATA 1007
|||||||||||| | |||||| | |||||| |||||| ||| || |||||||||||||
Sbjct 832 ATCATAACCTCCAGA-GATAAATCG-GTGTTTCGCCTTT-GTCGAG-TCAATCAAATATA 887
Query 1008 C-ACGGTTCAAGGTTTAAATGTGCACGAGGCTCTGCAGCTTTTCTCCCAAA-G--CGTAT 1063
| |||||| |||||||||| | | |||||||| ||||| ||||| | | ||| |
Sbjct 888 TGA-GGTTCACGGTTTAAATGAGAAAGAGGCTCTTCAGCTATTCTCT-ATGTGTGCGTCT 945
Query 1064 TTGGAATAAACGAGCCAGAGCAGAATGAC-AGGAAACTGTCAATGAAGGTGATTGACTAT 1122
| || | | | || |||||||||| | | || |||||||||| || ||| | |||
Sbjct 946 ATAGACGATATG-GC-AGAGCAGAATCTCCACGAGG-TGTCAATGAAAGTTATTAAATAT 1002
Query 1123 GTTAATGGAAACCCGTTAGCTCTCAG-CATTTACGGCCGAGAGCT-AATGGGGAAGAA-- 1178
| |||||| | || ||||||||||| | | || ||| ||||||| || ||| |||||
Sbjct 1003 GCTAATGGCCATCCATTAGCTCTCAGTC-TCTATGGCAGAGAGCTGAA-GGGTAAGAAAA 1060
Query 1179 GTC----AGAAATGGAGACTGCATTCTTCGAGCTCAAGCATTGTCCTCCCTTAAAGATTC 1234
| | |||||||||||| |||||| || | |||||| | ||||||| ||| |||
Sbjct 1061 GACCGCCAGAAATGGAGACAGCATTCCTCCAACTCAAGGAACGTCCTCC---AAATATTT 1117
Query 1235 AGGATG-TGCTAAA-AA-ACGCTTATAGTG-CACT-T-AGCGACAATGAGAA-GA-ACAT 1286
| || ||| || || | ||| || || ||| | | |||| || || || | ||
Sbjct 1118 TTGTTGATGC-AATCAAGA-GCTGCTA-TGACACACTCAATGACAGGGAAAAAGATATAT 1174
Query 1287 TGTTTTGGACATTGCTTTTTTCTTC-AAGGGAGAAACTGTCAATTATGTGATGCA-GCTG 1344
| ||| |||||| |||| ||||||| |||| ||||| ||| | || |||||||| | ||
Sbjct 1175 T-TTT-GGACATAGCTTGTTTCTTCCAAGG-AGAAAATGTTGACTACGTGATGCAAG-TG 1230
Query 1345 CTTGAGGAATCTCATTACTTTCCACGTCTTGCAATAGATGTTCTTGTGGACAAGTGTGT 1403
||||||| | | || |||||||| | ||| ||| ||||||||||| || |||| |||
Sbjct 1231 CTTGAGGGTTGTGGTTTCTTTCCACATGTTGGAATCGATGTTCTTGTAGAGAAGTATGT 1289
> Ahg948513 jgi|Araly1|948513|scaffold_800400.1
Length=2182
Score = 156 bits (84), Expect = 2e-36
Identities = 200/255 (78%), Gaps = 11/255 (4%)
Strand=Plus/Plus
Query 514 AGAGATGTTTATGGGAAGCT-TTATCCTGCA-GAACGAGTTGGAATTTACGC---GAGGC 568
||||||||||||| |||| | || ||| | |||||| | ||||| ||| | || ||
Sbjct 456 AGAGATGTTTATGAGAAGATCTT-TCC-AAAGGAACGAATAGGAATCTACTCAAGGATGC 513
Query 569 TACTAGAGATAGAAAAGTTGCTTTACAAGCAA-CATAGGGACATCCGAAGCATAGGAATT 627
| | || |||||||| ||||| | ||||||| ||| |||| | ||||||||| |||
Sbjct 514 TGCCAGCTATAGAAAACTTGCTATGCAAGCAACCATGGGGA-GTTAAAAGCATAGGGATT 572
Query 628 TGGGGTATGCCTGGCATAGGCAAGACGACGCTTGCTAAAGCAGTCTTTAATCACATGTCC 687
|| |||||||| |||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 573 TGTGGTATGCCAGGCATAGGCAAGACGACGCTTGCTAAAGCAGTCTTTGACCAAATGTCT 632
Query 688 ACTGATTATGATG-CTTCTTGCTTCATCGAGAACTTTGATGAAGCTTTTCATAAGGAGGG 746
|| ||||| | | |||||||| |||| || ||| ||||||| ||||| ||| ||||
Sbjct 633 GGTGGCTATGAAGTCA-CTTGCTTCGTCGAAAATTTTCATGAAGCCTTTCACAAGAAGGG 691
Query 747 ACTCCACCGTTTGCT 761
||| || |||||||
Sbjct 692 ACTTTACGGTTTGCT 706
> Ahg948486 jgi|Araly1|948486|scaffold_800373.1
Length=2973
Score = 115 bits (62), Expect = 3e-24
Identities = 183/239 (77%), Gaps = 18/239 (8%)
Strand=Plus/Plus
Query 487 GACTCCGAACTAGTGGAAGAGATCGTCAGAGATGTTTATGGGAAG--C-TTTATCCTGCA 543
|||||| ||||||| |||||||| || |||||||| ||| |||| | ||||| ||
Sbjct 387 GACTCCAAACTAGTAGAAGAGATTGTGAGAGATGTGGATGAGAAGCTCTTTTAT-ATG-- 443
Query 544 GAACGAGTTGGAATTTACGC-GAGGCTACTAGAGATAGAAAAGT-TGCTTTACAAGCAA- 600
| |||||||||||| ||| | ||| | | ||| ||||||| | || || ||||||||
Sbjct 444 GGACGAGTTGGAATCTACTCAAAGG-TGGTGGAGGTAGAAAA-TATGATTAACAAGCAAC 501
Query 601 CATAGGGACATCCGAAGCATAGGAATTTGGGGTATGCCTGGCATAGGCAAGACGACGCTT 660
| | ||| |||||| | | |||||||||||||||||||||||||||||| | || |||
Sbjct 502 CGTTGGG-CATCCGCTGTGTTGGAATTTGGGGTATGCCTGGCATAGGCAAGGCTACACTT 560
Query 661 GCTAAAGCAGTCT-TTAATCACATGTCCA-CTGATTATGATGCTTC-TTGCTTCATCGA 716
|| ||||| || | || | || ||||| | |||| ||||||| | ||| || |||||
Sbjct 561 GCAAAAGCGGT-TGTTGACCAGATGTCTGGCGGATT-TGATGCT-CATTGTTTTATCGA 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 192381031515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5