BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17900.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488655 jgi|Araly1|488655|fgenesh2_kg.6__1789__AT4G08580.1 2130 0.0
> Ahg488655 jgi|Araly1|488655|fgenesh2_kg.6__1789__AT4G08580.1
Length=1354
Score = 2130 bits (1153), Expect = 0.0
Identities = 1290/1357 (95%), Gaps = 6/1357 (0%)
Strand=Plus/Plus
Query 123 ACAGATAGCTAATATAATTGAGTTTGGATACTCGCAAGTGAAAATATGTCGGTCACAGCG 182
|||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 1 ACAGATAGCTAATAAAATTGAGTCTGGTTACTCGCAAGTGCAAATATGTCGGTCACAGCT 60
Query 183 GGAGTGAGTGAAT-CTGCAATTGCTGTAAGGGAGAAA-CTAAAAGGTGGTATTGGACAGA 240
|||||||||| || |||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 61 GGAGTGAGTG-ATGCTGCAATTGCTGTAAGGG-CAAAGCTACAAGGTGGTATTGGACAGA 118
Query 241 CTAAAGTGCGAAGGTATTGGCCAGGAAAAGCTCCGGAGTGGGCTGAGGAAGCTGAAGAAG 300
||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 119 CTAGAGTGAGAAGGTATTGGCCAGGAAAAGCTCCTGAGTGGGCTGAGGAAGCCGAAGAAG 178
Query 301 ATGATGATGTTAGGATGCAGAAGGTTTCTGTTTTGGATAGAGCTTTTCCAAAGAATGATG 360
|||| |||||||||||||||| || |||||||||||||||| ||||||||||| | ||||
Sbjct 179 ATGAGGATGTTAGGATGCAGACGGCTTCTGTTTTGGATAGATCTTTTCCAAAGCAGGATG 238
Query 361 AT-TTGGGTGTTGCTAGGAAGGATGATCCAAGGCTGCGCCGTTTAGCTAAGACTAAAGTT 419
|| || |||||||||||||||||||| ||||||||||||||||||||| |||| | ||||
Sbjct 239 ATCTT-GGTGTTGCTAGGAAGGATGACCCAAGGCTGCGCCGTTTAGCTCAGACCAGAGTT 297
Query 420 GAAAACCGTGACGAAGTTAGAGCTGATCATCGGCGGATAAGACAGGCTGAGATTATTTAT 479
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 298 GAAAACCGTGACGAAGTTAGAGCTGATCATCGGCGAATTAGACAGGCTGAGATTATTTCT 357
Query 480 ACGGAAGAAGAAGAATCGAGGAATCaagagaatagagacgaggacgatgatgaagatgcc 539
|||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 358 ACGGAAGAAGAAGATTCGAGGAATCAAGAGACTAGAGACGAGGATGATGATGAAGATGCC 417
Query 540 ttggaagagagaagaagaagaattagagagaaaaatcttagaagagcgcaagagGAGGCT 599
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 418 TTGGAAGAAAGAAGAAGAAGAATTAGAGAGAAAAATCTTAGAAGAGCACAAGAAGAGGCT 477
Query 600 GCTTTACTTCCTTTagaagaagaagatgagatacaagaggaagaagaggaggaggaggag 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 GCTTTACTTCCTTTAGAAGAAGAAGATGAGCTACAAGAGGAAGAAGAGGAGGAGGAGGAG 537
Query 660 TCTGAGTACGAGACTGATTCGGAAGATGATATGCCTGGTATTGCCATGATTAAGCCTGTT 719
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 538 TCCGAGTACGAGACTGATTCAGAAGATGAGATGCCTGGTATTGCCATGATTAAGCCTGTT 597
Query 720 TTTGTACCGAAAGCTGAGAGAGATACAATTGCAGAGCGAGAGAGGCTTGAGGCTGAAGAA 779
||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 598 TTTGTGCCGAAAGCTGAGAGAGATACAATTGCAGAGCGTGAGCGGCTTGAGGCTGAGGAA 657
Query 780 GAAGCTCTTGAAGAATTAGCAAAGAGAAAATTGGAGCAAAGAAAATTAGAGACAAAGCAA 839
||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 658 GAAGCTCTTGAGGAATTAGCAAAGAGAAAACTGGAGAAAAGAAAAATAGAGACAAAGCAA 717
Query 840 ATAGTGGTTGAGGAAGTTAGGAAAGATGAAGAGATACGGAAGAACATTCTATTGGAGGAA 899
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATAGTGGTTGAGGAAGTTAAGAAAGATGAAGAGATACGGAAGAACATTCTATTGGAGGAA 777
Query 900 GCAAATATTGGAGATGTGGAAACTGATGATGAACTCAATGAAGCTGAGGAGTATGAAGTT 959
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 GCAAATATTGGAGATGTGGAAACTGATGACGAACTCAATGAAGCTGAGGAGTATGAAGTG 837
Query 960 TGGAagacaagagagattggtaggatcaagagagaaagagatgcaagggaagctatgctg 1019
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGGAAGACAAGAGAGATCGGTAGGATCAAGAGAGAAAGAGATGCAAGGGAAGCTATGCTG 897
Query 1020 agagagagggaagaaatagagaagttgaggaatatgacagagcaggagaggagagattgg 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 AGAGAGAGGGAAGAAATAGAGAAGTTGAGGAATATGACAGAGCAGGAGAGGAGAGAATGG 957
Query 1080 gagaggaaGAATCCGAAACCTTTGTCAGCTCAACCGAAAAAGAAATGGAACTTTATGCAG 1139
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 958 GAGAGGAAGAATCCGAAACCTTCATCAACTCAACCGAAAAAGAAATGGAACTTTATGCAA 1017
Query 1140 AAATATTACCACAAGGGTGCCTTCTTCCAGGCAGATCCTGATGATGAGGCAGGTTCTGCT 1199
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAATACTACCACAAGGGTGCCTTCTTCCAGGCAGATCCTGATGATGAGGCAGGTTCTGCT 1077
Query 1200 GGAACCGATGGTATATTTCAGCGCGACTTCTCTGCTCCAACTGGAGAAGATAGGTTGGAC 1259
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 GGAACCGATGGTATATTTCAGCGCGACTTCTCTGCTCCAACCGGAGAAGATAGGTTGGAC 1137
Query 1260 AAATCGATTCTCCCCAAAGTTATGCAAGTCAAGCACTTTGGTCGTAGTGGAAGAACTAAA 1319
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAATCGATCCTGCCCAAAGTCATGCAAGTCAAGCACTTTGGTCGTAGTGGAAGAACTAAA 1197
Query 1320 TGGACTCACCTTGTCAATGAGGACACAACAGATTGGAGTAACCCGTGGACTTCCAATGAT 1379
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1198 TGGACTCACCTTGTCAATGAGGATACAACAGATTGGAGTAACCCGTGGACTTCCAATGAT 1257
Query 1380 CCTCTACGTGAAAAATACAACAAGAAAATGGCAGGCATGGATGCTCCTATCGCAAAACCA 1439
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1258 CCTCTACGGGAAAAATACAACAAGAAAATGGCAGGCATGGATGCTCCAATTGCAAAACCA 1317
Query 1440 AAAGGGAGCAAGAAGATGAAAGATTGGGAGTCTTAAA 1476
|||||||||||||||||||||||||||||| ||||||
Sbjct 1318 AAAGGGAGCAAGAAGATGAAAGATTGGGAGACTTAAA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5