BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17910.1
Length=4532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473745 jgi|Araly1|473745|fgenesh2_kg.1__3699__AT5G17910.1 3328 0.0
> Ahg473745 jgi|Araly1|473745|fgenesh2_kg.1__3699__AT5G17910.1
Length=4401
Score = 3328 bits (1802), Expect = 0.0
Identities = 2349/2599 (90%), Gaps = 94/2599 (4%)
Strand=Plus/Plus
Query 45 AGAGACGACCTGGAAAAATATAAAAAGAGATGATTAGTGATC-G--GTCGGAGTTCAGAG 101
||| || |||||||||||||| ||| | ||||| ||||||| | ||||||||||||||
Sbjct 1 AGAAACAACCTGGAAAAATAT--AAA-A-ATGATCAGTGATCGGTCGTCGGAGTTCAGAG 56
Query 102 TTCAGATTCGGAGATTATTCATGATTATGATCAGAACGTCGTACAAATGGATTTGCAATC 161
|||||||||||||||||||| | |||| |||||||| ||| |||| ||||||||||||||
Sbjct 57 TTCAGATTCGGAGATTATTCGTCATTAAGATCAGAATGTCCTACAGATGGATTTGCAATC 116
Query 162 ATCCCTTTCTTCTCGGCTTCGTTGCGTTTTTGTATTATCTGCATAGATATTGTCCTCTTT 221
||||||||||| | || ||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 117 ATCCCTTTCTTTTGGGGTTCATTGGGTTTTTGTATTTTCTGCATAGATATTGTCCTCTTC 176
Query 222 TGTTTGCTCCCTTAGTGACTGCGTCTCCTGTTTTGGTGTGTACTTTCGTCTTGCTTGGTA 281
| |||||||| || || ||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 177 TATTTGCTCCTTTGGTCACTGCATCTCCTGTTTTGGTGTGTACTTTCGTTTTGCTTGGCA 236
Query 282 CCATTTTGAGTTTTGGAGAGCCAAACATTCCTGAAATCGAAAAGGATCCAGAGATTTTCC 341
| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 237 CGATTTTGAGTTTTGGAGAGCCAAACATTCCTGAAATCGATAAGGAACCAGAGATTGTCC 296
Query 342 ACGAGGCTGCACCTCTTAGAACTGAGGTTTCGAGGGATGCTAATGTTACTGTTGTTGATA 401
|||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 297 ACGAGGCTGCTCCTTTTAGAACTGAGCTTTCGAGGGATGCTAATGTTACTGTTGTTG--A 354
Query 402 GAGGAGGAGATGAGAGTTTTACCGTAGAGAGTTTCGTCGGGGCGGAGAAAGTTGTGCTTG 461
|| |||||||| |||||||||| || ||||||||||| ||||| ||||||| ||||||||
Sbjct 355 GA-GAGGAGATCAGAGTTTTACAGTGGAGAGTTTCGTGGGGGCAGAGAAAGATGTGCTTG 413
Query 462 AGGATGGAAATGATGATGCTGAAAGATTAGTGGATAGCCAATTCAGTGAGGTTGAGGACG 521
||||||| |||||||||| ||| ||||||||||| | || | ||||||| |||||||||
Sbjct 414 AGGATGGGAATGATGATGTTGATAGATTAGTGGAAAACCTACTCAGTGAAGTTGAGGACA 473
Query 522 ATGGCCGGCCATTTGATTATAGGCCTTTAGTTGATGAGACTCTTGATGAGATTAAACGGG 581
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ATGGTCGGCCTTTTGATTATAGGCCTTTAGTTGATGAGACTCTTGATGAGATTAAACGGG 533
Query 582 ATACTCATGTAAGATTTGAGGAGAAAGCATTTATTTTGGATGTGGAAAAGAAGGGAGACA 641
|| |||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 534 ATCCTCAGGTAAGGTTTGAGGAGAAAGCATTTATTTTGGATGTGGACAAGATGGGAGAAA 593
Query 642 GAGAAGATGAGAAACTGATTGAAAATGACGGG-----A-C---GGGTGCAGAGCAGTCGA 692
||| ||| |||||||||||||||||||| ||| | | ||||| |||||| ||||
Sbjct 594 GAGTAGAGGAGAAACTGATTGAAAATGATGGGACACAAGCTTTGGGTGGAGAGCAATCGA 653
Query 693 GGACAAATGGATCT-TTATATG-AA--A--G--G-----ATGGATGATCAGATGGATGTT 739
||| ||| |||||| || |||| || | | | ||||||||||||||||||||
Sbjct 654 GGAAAAACGGATCTCTT-TATGAAAGGATTGACGATTCCATGGATGATCAGATGGATGTA 712
Query 740 TCTCCAGTTTCACCTTGGAGACCAATGAGGCATGAAGAGGATGAGGATGATGATGCGGAC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TCTCCAGTTTCACCTTGGAGACCAATGAGGCATGAAGAGGATGAGGATGATGATGCGGAC 772
Query 800 CGTGATGACTC-CTTAGATTCTGGGTCTGATGGTGCAGAAAGTTCTTCACCTGATGCTTC 858
||||||||||| | | |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 773 CGTGATGACTCGC-TGGATTCTGGGTCTGATGGTGCAGAAAGTTCTTCGCCGGATGCTTC 831
Query 859 TATGACAGACATCATTCCC-ATGCTTGACGAGCTTCACCCGCTTTTACTCTCAGAAGCTC 917
|||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 832 TATGACAGACATCA-TCCCGATGCTTGACGAGCTTCACCCGCTTTTACACTCAGAAGCTC 890
Query 918 CTACTCGTGGTATTGTAGATGGTGAAGGATCTGATGCAGCTTCAGAGGGGCCAC------ 971
||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 891 CTAGTCGTGGTATTGCAGATGGTGAAGGATCAGATGCAGCTTCAGAGGGGCCACATAGGA 950
Query 972 -------------A--TAGGAGTAGTAGTGATGAAGGAATGGAGTCTGATGGTGACAGtg 1016
| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 951 GTAGTAGTGATGAAGGTAGGAGTAGTAGTGATGAAGGAATGGAGTCTGATGTTGACAGTG 1010
Query 1017 aaagtcatggagaagaaggcgataacgagaatgaagatgaggaagaggatgaagaagaag 1076
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||
Sbjct 1011 AAAGTCATGGAGAAGAAGGCGACAACGAGAATGAAGATGAGGAAGAAGATGAAGAAG-AG 1069
Query 1077 aagatgaggaagagaaacaggaaaagaaggaagataaggacgacgaaagTAAATCTGCAA 1136
|| |||||| || |||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1070 --GAAGAGGAACAGGAACATGAAAAGAAAGAAGATAAGGACGACGAAAGTAAATCAGCAA 1127
Query 1137 TCAAATGGACAGAGGCTGACCAAAGAAATGTTATGGATCTAGGAAGTCTTGAACTTGAAA 1196
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TCAAGTGGACAGAGGCTGACCAAAGAAATGTTATGGATCTAGGAAGTCTTGAACTTGAAA 1187
Query 1197 GAAACCAGCGGTTGGAGAATCTTATTGCCAGGAGAAGGGCTCGTCACAATATGAGACTAA 1256
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1188 GAAACCAAAGGTTGGAGAATCTTATTGCCAGGAGAAGGGCTCGCCACAATATGAGACTGA 1247
Query 1257 TGGCAGAAAGAAATCTTATTGATTTTGATAGTGCTGATATTCCCTTTAATATGCCGCCAA 1316
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1248 TGGCAGAGAGAAATCTTATTGATTTTGACAGTGCTGATATTCCCTTTAATATGCCGCCAA 1307
Query 1317 TCTCAACTGCAAGGCATAATCCATTTGATGTTTCATATGATTCGTATGATGATAT--G-- 1372
|||||||||| ||||| ||||||||||||| | |||||||||| ||||||||||| |
Sbjct 1308 TCTCAACTGCTAGGCAGAATCCATTTGATGCTCCATATGATTCCTATGATGATATGGGAT 1367
Query 1373 -----CCTATCCCTGGTTCTGCCCCGTCCATTATGTTTGCGAGGAGAAATCCATTTGACC 1427
||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1368 TACCACCTATCCCTGGCTCTGCCCCGTCCATTATGTTTGCGAGGAGAAACCCATTTGATC 1427
Query 1428 TTCCATATGAGCCAAATGAAGAAAAGCCAGACCTCAAAGG-TGACGGTTTTCAGGAAGAG 1486
||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||||||
Sbjct 1428 TTCCATATGAGCCAAATGAAGAAAAGCCAGACCTC-AAGGCTGACGGTTTCCAAGAAGAG 1486
Query 1487 TTCTCTTCTCAACAACCAAAGGATCCAA-TGTTCAGAAGACATGAAAGTTTCAGTGTAGG 1545
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1487 TTCTCTTCTCAACAACCAAAGGAT-CAAGTGTTCAGAAGACATGAAAGTTTCAGTGTAGG 1545
Query 1546 CCCATCAATGCTTGGAGGTCCTAGACATGATAGGCTACGACCTTTCTTTGTGTTAGAAAG 1605
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1546 CCCATCAATGCTTGGAGGTCCTAGGCATGATAGGCTACGACCTTTCTTTGTGCTAGAAAG 1605
Query 1606 ATTAGCCAATGAGGGAACGAGCTATTATCCATTTGAAAGGCAGCTCAGTGAAGTTAGTGA 1665
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1606 ATTAGCAAATGAGGGAACGAGCTATTATCCATTTGAAAGGCAGCTCAGTGAAGTCAGTGA 1665
Query 1666 ATCAAAAGTTAGTTCTATTCCTGATACTGAATCTGTGTGCACAGTCCTGGAGGATGACGA 1725
||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1666 ATCAAAAGTCAGTTCGGTTCCTGATACTGAATCTGTGTGCACAGTCCTAGAGGATGATGA 1725
Query 1726 AAAGAAGGTGGATGAAAATAATGCTGACCGAGAAACCAAAATTGCTAAAGTTGATATGGT 1785
|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1726 AAAGAAGGTGGATGAACATAATGCTGATCGAGAAACCGAAATTGCTAAAGTTGATATGGC 1785
Query 1786 TTCTGACAATGATGAAGAAAATAA-CCATTCGGCTTCTGACCACGATGAAGAAAATAGTC 1844
||||||| ||||||||||||| || |||||| ||||||||||| ||||||||||| || |
Sbjct 1786 TTCTGACCATGATGAAGAAAA-AAGCCATTCAGCTTCTGACCATGATGAAGAAAAAAGCC 1844
Query 1845 ATTCAGCTTCTGACCATGATGAAGAAAAAAGCCATTCGTCCGAGGATTCCGATTTCGATG 1904
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1845 ATTCAGCTTCTGACCATGATGAAGAAAAAAGCCATTCGTCTGAGGATTCCGATTTCGATG 1904
Query 1905 AACAAGCTGATAGCAAAAAACTTCACCATGATGTGGCTGAGATAGTACTAGGAAGT-G-G 1962
||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||| | |
Sbjct 1905 AACAAGCTGATAGCAGAAAGCTTCATAATGATGTGGCTGAGATAGTACTGGGAAGTGGAG 1964
Query 1963 -TGAAACACACCATGAGCAATCGGACATGATGGAAGGAGAAACTTCTGATAAGGGAAAAC 2021
|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 1965 AAGAAACACACCATGATCAATCGAACATGATGGAAGGAGAAACTTCTGATAAAGGAAATC 2024
Query 2022 TTGATG-A-AG----TCAGTGATAGTGATTCATCTTTATCAGAGAAAGAAGAAAAGATAC 2075
|||||| | || |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2025 TTGATGAAGAGTATTTCAGTGATAGTGATTCATCTTTATCAGAGAAAGAAGAAAATATGC 2084
Query 2076 GTGATATCAGTGAAGATGAAGCAATGTTAATTTCAGAACAAGTAGTTGATCTTCATGAAG 2135
| |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 2085 GGGATATCAGTGAAGATGAAGCAATGTTGATTTCGGAACGGGTAGTTGATCTTCATGAAG 2144
Query 2136 AATTAGGGGCGTCTTCACTGCCTTCTTTTGGAGAATTAGAAATCAATATGGCTAGAGG-G 2194
||| ||| |||||||| | |||||||||||||||||||||||||||| |||||| || |
Sbjct 2145 AATCAGGTGCGTCTTCCCAGCCTTCTTTTGGAGAATTAGAAATCAATGGGGCTAG-GGTG 2203
Query 2195 GTGGAGGATGATTATCACCATGATGAAGCTCGTGCTGAAGAATCTTTCATTACTGCGCAT 2254
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 GTGGAGGATGGTTACCACCATGATGAAGCTCGTGCTGAAGAATCTTTCATTACTGCGCAT 2263
Query 2255 CCGTCACTTGACGAGTCAGCCATACATGTTCTTTGTGGTTTGGGGGACGGTGATCACGAG 2314
|| |||||||| |||||||| || |||| ||||||||||||||| ||||| | ||||||
Sbjct 2264 CCTTCACTTGATGAGTCAGCAATTCATGCTCTTTGTGGTTTGGGAGACGGCCACCACGAG 2323
Query 2315 GAACCTGTTTACGATTCGAGTCCTCCCTCAGGCAGTAGATTCCCATCATTTTCTTCCGTA 2374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2324 GAACCTGTTTACGATTCGAGTCCTCCCTCAGGCAGTAGATTCCCATCATTTTCTTCTGTG 2383
Query 2375 TCGTC-T--GATTACAAACCAGATCTACCTgaaaagaatggggaagaaatagaagaaaat 2431
||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2384 TCGTCGTCTGATTACAAACCAGATCTACCTGAAAAGAATGGGGAAGAAGTAGAAGAAAAT 2443
Query 2432 gaagagaaagaaCGTGAAGTTTATTCTGAAAGTATAGGTCCTGAGGAAATTCATTCTACT 2491
||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 2444 GAAGAGAAAGAACATGAAGTTTATTCTAAAAGCATAGGTCCTGAGGAAATTCATTCCACT 2503
Query 2492 TCTAATGAGACTGAAACAAGGACAA-GCGAAGTAGGAGAGAA-TAGCATGCATGTTACAG 2549
||||||||||||||||||||||||| | ||||||||||| || |||||||||||| |||
Sbjct 2504 TCTAATGAGACTGAAACAAGGACAAAG-GAAGTAGGAGA-AACTAGCATGCATGTAACAA 2561
Query 2550 GAGAGGCAAGCCTTGTCAT 2568
|||||||||||||||||||
Sbjct 2562 GAGAGGCAAGCCTTGTCAT 2580
Score = 1332 bits (721), Expect = 0.0
Identities = 916/1007 (91%), Gaps = 26/1007 (3%)
Strand=Plus/Plus
Query 2572 GGAGCAT-TCGACACCACTGGAAGAATCACCTGATGTGGTGCATGACATAGCTGAAACTT 2630
||||||| | |||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2695 GGAGCATGT-GACAACACTGGAAGAATCACCTGATGTGGTACGTGACATAGCTGAAACTT 2753
Query 2631 CAGTAAACAAGTCAGTAGTTGAAGAGATAATGTACGAGGAAGAGGAAGCTCAAAAACAAA 2690
|||| |||| |||||||| ||||||||||||| |||||||||||||| | || |||||||
Sbjct 2754 CAGTTAACAGGTCAGTAGCTGAAGAGATAATGCACGAGGAAGAGGAATCCCAGAAACAAA 2813
Query 2691 AAGATGAAGTCAGTCCTCAAACATTCAATGCTGACATCCCAATAGATAGTTATGCCAGTT 2750
||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 2814 AAGATGAAGCCAGTCCTCAAACATTCAATGCAGACATCCCAATAGATAATTATGCCACTT 2873
Query 2751 TGTCTTCTGGAGCAGTTGAGTATGTTGAGACGCATTCATTTAATGACGAAGATGTTGCAC 2810
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |
Sbjct 2874 TGTCTTCTGGAGCAGTTGAGTATGTTGAGACGCATTCTTTTAATGATGAAGATGTTCCGC 2933
Query 2811 AGTTGGAACAAGAACCAGTTCACTCATTAGTTCATGATGCTGAGGAAGAAACTCACAACG 2870
|||||||||||||||||| |||||||| ||||| ||||| ||||||||||| | || ||
Sbjct 2934 AGTTGGAACAAGAACCAGCTCACTCATCAGTTCTTGATGATGAGGAAGAAATTAACCCCG 2993
Query 2871 ACCAAACAATGGATATTGAAGTAGACTCTGTAAATGCTAGTGCCCAAAATGTGGGATCTG 2930
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 2994 ACCAAACAATGGATATCGAAGTAGACTCTGTAAATGCTGGTTCCCAAAATGTGGGATCTG 3053
Query 2931 AAGAAACAAGTCCATCTGAATCAGATAGAGAACTGACATGGTCAGATAAATCTGTGGTAG 2990
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3054 AAGAAACAACTCCATCTGAATCAGATAGAGAACTGACTTGGTCAGATAAATCTGTGGTAG 3113
Query 2991 AACAATCATCTCTTGAACCTGGTGACGATCAAGTACCAACTCGTGCAGGTCCTGTGAGTG 3050
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 3114 AACAATCATCTCTGGAACCTGGTGAAGATCAAGTACCAACTCGTGCAGGTCCTGTTAGTG 3173
Query 3051 TCGTCTTTTCCCGCAACATCACTTTTCACGAGTATCACGATGCTCCTGAAGATACAACCG 3110
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3174 TCGTCTTTTCCCGCAACATCACTTTCCACGAGTATCACGATGCTCCTGAAGATACAGCGG 3233
Query 3111 AGTTATCTTGTTTGACGTCTGATACATCCTCTTCTCCAACAGAATCTCCCGAGTACACGA 3170
|||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 3234 AGTTATCTTGTTTGACATCTGACACATCCTCCTCTCCAGCAGAATCTCCCGAGTACACGA 3293
Query 3171 CACCTATGGTTGGTGAAGGCTCAAGGGCAGAGTTTTTCCAAGAGGATATTTATGAGGAGC 3230
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 3294 CACCTATGGTTGGTGAAGGCTCAAGGGCGGAATTCTTCCAAGAGGATATTTATGAGGAGC 3353
Query 3231 TAGACCATGTGGTGGAGCGATTAGAGCAGCTTACAGACTTGCATGCAATATCTCAAAGTC 3290
| ||| |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 3354 TTGACGATGTGGTGCAGCGATTAGATCAGCTTACAGACTTGCATGCAATATCTGAAAGTC 3413
Query 3291 CTCCTGAAATTATCACCGAAGAGGCAGACGAGATAAAAGAGATTGATGAAGGATTGTTGT 3350
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3414 CTCCTGAAATTATCACTGAAGAGGCAGACGAGATAAAAGAGATTGATGAAGGATTGTTGT 3473
Query 3351 CTGAACTTGACTCGATTGGAGACTTCAATGTTAAGGAAGTTGTGACAGATACTGAACCTG 3410
||||||||||||||||||||||||||| |||||||||| | | |||| |
Sbjct 3474 CTGAACTTGACTCGATTGGAGACTTCAGTGTTAAGGAA------A----T--TGAA---G 3518
Query 3411 GGCCATCTTCGATAGAAAATGCTATGAACCAGGCTGTTGTAGAGAGCATGGAAAAGCAAC 3470
|||| | ||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 3519 ----ATCT---A--GAAAATGCTATTAATCAGGCTGTTGTAGAGAGCATGGACAAGCAAC 3569
Query 3471 CAAAGTCACCACAATCAGATAGTAGGTCTGGAGAAATCATGTGTGCAGTTGAAACCAAAC 3530
|||| ||||||||||||||| ||||| |||||||||||| ||||| ||||| | || |||
Sbjct 3570 CAAAATCACCACAATCAGATGGTAGGCCTGGAGAAATCAAGTGTGTAGTTGGATCCGAAC 3629
Query 3531 CATCGGAGTCTTCAGTTGACGAAAGTTCTATTGATGAAACAAACGTT 3577
|||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 3630 CATCAGAGTCTTCAGTTGAAGAAAGTTCTATTGATGAAAAAAACGTT 3676
Score = 749 bits (405), Expect = 0.0
Identities = 608/699 (87%), Gaps = 42/699 (6%)
Strand=Plus/Plus
Query 3783 aaggagaagaagaggaggaaagtaaaccaaaagagaTAACAAAATCTGATGTTTTACTTG 3842
||| ||||||||| |||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 3699 AAGAAGAAGAAGAAGAGGAAAGTAAACCAAAAGAGATAAC---ATCCGATGTTTTACCTG 3755
Query 3843 TCGAAACTCGAGCACTGGAAGAATTTCCCAAACCTTCTGAACTaaaaaaaGGGATGGCAA 3902
||||||||||| ||||||||||||| |||||||||||||||| |||| | |||||| |||
Sbjct 3756 TCGAAACTCGATCACTGGAAGAATTCCCCAAACCTTCTGAACCAAAAGAGGGGATGTCAA 3815
Query 3903 TGGAAGTAATCTCTGAAGGAGTGGTAATCCCCACAAAAGCTGCTGGTCCTAGTAATGTAA 3962
||||||||||||||||| ||||||| || |||||| |||| |||||||||||||||||||
Sbjct 3816 TGGAAGTAATCTCTGAAAGAGTGGTGATTCCCACAGAAGCAGCTGGTCCTAGTAATGTAA 3875
Query 3963 CACTAAGTGATGAGGTTGTGACTGAGAAAGCAAAAGCTGAGACCACTGCAAGCAACACTG 4022
|| |||||||||| |||||||| ||| |||| |||||||||||||| |||||||||||||
Sbjct 3876 CATTAAGTGATGAAGTTGTGACCGAGGAAGCGAAAGCTGAGACCACCGCAAGCAACACTG 3935
Query 4023 ATGCAAATGTCCAGAGTCCTGAGTCCAAAGAAACTCCAGAGAATTCG-GTGG-AAACTAT 4080
||| |||||||||||||||| ||| ||||||| ||||||||| ||| | || |||| ||
Sbjct 3936 ATGTGAATGTCCAGAGTCCTGTGTCGAAAGAAAGTCCAGAGAACTCGAG-GGAAAAC-AT 3993
Query 4081 TGCAGAGCAAAAAGGAAAGTAGGAGAAGAAGACGAAGTCCAACCCTTCAAGCTCGAGTTC 4140
||||||||||||||||||| |||||||||| | |||| || | || || |
Sbjct 3994 TGCAGAGCAAAAAGGAAAGAAGGAGAAGAAAATGAAG---AA----T-AA----GA-CT- 4039
Query 4141 AAGCTCAAGCTCTAGTTCGAGTGACTCAGATTG--AAAATTAAAGGGTAATACATCATCT 4198
|| ||||||||||||||| |||||||||||||| ||||| |||||||||| | |||||
Sbjct 4040 AA-CTCAAGCTCTAGTTCCAGTGACTCAGATTGAAAAAATCAAAGGGTAAT--A-CATCT 4095
Query 4199 CAAACTCAAGTAAATATATCTTTGTTAAAGGGTAATGATAGGCACTTCTGGGTTTTG--t 4256
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 4096 CAAACTCAAGTAAATATATCTTTGTTAAATGTTAATGATAGGCACTTCTGGGTTTTGTTT 4155
Query 4257 tttttttC-AT----CTGTGTCCTCTGTT-TTAAAAGGGGCAAGAAGTA-GCCGCTAATC 4309
|||||||| || |||||||||||||| |||||||| |||||||| | ||| ||||||
Sbjct 4156 TTTTTTTCAATCAGACTGTGTCCTCTGTTATTAAAAGGTGCAAGAAG-AGGCCACTAATC 4214
Query 4310 ATATTTTTATACCAAgttttctccttcctttgtattggttttcttgtgtgtttgtgtttc 4369
||| |||| ||||||| ||| | | |||||||||||||||||||||||||||||||||||
Sbjct 4215 ATACTTTTGTACCAAG-TTT-T-C-TCCTTTGTATTGGTTTTCTTGTGTGTTTGTGTTTC 4270
Query 4370 cttttctcttctttcttcagcttt-cATATTTATCGATTTGATTGATTTGTATCTCTTGA 4428
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||| | ||||
Sbjct 4271 CTTTTCTCCTCTTTCTTCAGCTTTTCATATTTATTGATTTGATTGATTTGTATTTTTTGA 4330
Query 4429 AACCAGAGAGGTTTTCTCAGGGTTTTGGATTGTGTCTTT 4467
||| | |||||||| |||||||||||| ||| ||||||
Sbjct 4331 AACTATTGAGGTTTTTTCAGGGTTTTGGTTTGAGTCTTT 4369
Score = 106 bits (57), Expect = 2e-21
Identities = 63/66 (95%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 1816 GGCTTCTGACCACGATGAAGAAAATAGTCATTCAGCTTCTGACCATGATGAAGAAAAAAG 1875
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1783 GGCTTCTGACCATGATGAAGAAAAAAGCCATTCAGCTTCTGACCATGATGAAGAAAAAAG 1842
Query 1876 CCATTC 1881
||||||
Sbjct 1843 CCATTC 1848
Score = 60.2 bits (32), Expect = 1e-07
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1850 GCTTCTGACCATGATGAAGAAAAAAGCCATTC 1881
||||||||||||||||||||||||||||||||
Sbjct 1784 GCTTCTGACCATGATGAAGAAAAAAGCCATTC 1815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 171449366365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5