BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17910.1 Length=4532 Score E Sequences producing significant alignments: (Bits) Value Ahg473745 jgi|Araly1|473745|fgenesh2_kg.1__3699__AT5G17910.1 3328 0.0 > Ahg473745 jgi|Araly1|473745|fgenesh2_kg.1__3699__AT5G17910.1 Length=4401 Score = 3328 bits (1802), Expect = 0.0 Identities = 2349/2599 (90%), Gaps = 94/2599 (4%) Strand=Plus/Plus Query 45 AGAGACGACCTGGAAAAATATAAAAAGAGATGATTAGTGATC-G--GTCGGAGTTCAGAG 101 ||| || |||||||||||||| ||| | ||||| ||||||| | |||||||||||||| Sbjct 1 AGAAACAACCTGGAAAAATAT--AAA-A-ATGATCAGTGATCGGTCGTCGGAGTTCAGAG 56 Query 102 TTCAGATTCGGAGATTATTCATGATTATGATCAGAACGTCGTACAAATGGATTTGCAATC 161 |||||||||||||||||||| | |||| |||||||| ||| |||| |||||||||||||| Sbjct 57 TTCAGATTCGGAGATTATTCGTCATTAAGATCAGAATGTCCTACAGATGGATTTGCAATC 116 Query 162 ATCCCTTTCTTCTCGGCTTCGTTGCGTTTTTGTATTATCTGCATAGATATTGTCCTCTTT 221 ||||||||||| | || ||| ||| ||||||||||| |||||||||||||||||||||| Sbjct 117 ATCCCTTTCTTTTGGGGTTCATTGGGTTTTTGTATTTTCTGCATAGATATTGTCCTCTTC 176 Query 222 TGTTTGCTCCCTTAGTGACTGCGTCTCCTGTTTTGGTGTGTACTTTCGTCTTGCTTGGTA 281 | |||||||| || || ||||| |||||||||||||||||||||||||| |||||||| | Sbjct 177 TATTTGCTCCTTTGGTCACTGCATCTCCTGTTTTGGTGTGTACTTTCGTTTTGCTTGGCA 236 Query 282 CCATTTTGAGTTTTGGAGAGCCAAACATTCCTGAAATCGAAAAGGATCCAGAGATTTTCC 341 | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| Sbjct 237 CGATTTTGAGTTTTGGAGAGCCAAACATTCCTGAAATCGATAAGGAACCAGAGATTGTCC 296 Query 342 ACGAGGCTGCACCTCTTAGAACTGAGGTTTCGAGGGATGCTAATGTTACTGTTGTTGATA 401 |||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| | Sbjct 297 ACGAGGCTGCTCCTTTTAGAACTGAGCTTTCGAGGGATGCTAATGTTACTGTTGTTG--A 354 Query 402 GAGGAGGAGATGAGAGTTTTACCGTAGAGAGTTTCGTCGGGGCGGAGAAAGTTGTGCTTG 461 || |||||||| |||||||||| || ||||||||||| ||||| ||||||| |||||||| Sbjct 355 GA-GAGGAGATCAGAGTTTTACAGTGGAGAGTTTCGTGGGGGCAGAGAAAGATGTGCTTG 413 Query 462 AGGATGGAAATGATGATGCTGAAAGATTAGTGGATAGCCAATTCAGTGAGGTTGAGGACG 521 ||||||| |||||||||| ||| ||||||||||| | || | ||||||| ||||||||| Sbjct 414 AGGATGGGAATGATGATGTTGATAGATTAGTGGAAAACCTACTCAGTGAAGTTGAGGACA 473 Query 522 ATGGCCGGCCATTTGATTATAGGCCTTTAGTTGATGAGACTCTTGATGAGATTAAACGGG 581 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 ATGGTCGGCCTTTTGATTATAGGCCTTTAGTTGATGAGACTCTTGATGAGATTAAACGGG 533 Query 582 ATACTCATGTAAGATTTGAGGAGAAAGCATTTATTTTGGATGTGGAAAAGAAGGGAGACA 641 || |||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| | Sbjct 534 ATCCTCAGGTAAGGTTTGAGGAGAAAGCATTTATTTTGGATGTGGACAAGATGGGAGAAA 593 Query 642 GAGAAGATGAGAAACTGATTGAAAATGACGGG-----A-C---GGGTGCAGAGCAGTCGA 692 ||| ||| |||||||||||||||||||| ||| | | ||||| |||||| |||| Sbjct 594 GAGTAGAGGAGAAACTGATTGAAAATGATGGGACACAAGCTTTGGGTGGAGAGCAATCGA 653 Query 693 GGACAAATGGATCT-TTATATG-AA--A--G--G-----ATGGATGATCAGATGGATGTT 739 ||| ||| |||||| || |||| || | | | |||||||||||||||||||| Sbjct 654 GGAAAAACGGATCTCTT-TATGAAAGGATTGACGATTCCATGGATGATCAGATGGATGTA 712 Query 740 TCTCCAGTTTCACCTTGGAGACCAATGAGGCATGAAGAGGATGAGGATGATGATGCGGAC 799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 TCTCCAGTTTCACCTTGGAGACCAATGAGGCATGAAGAGGATGAGGATGATGATGCGGAC 772 Query 800 CGTGATGACTC-CTTAGATTCTGGGTCTGATGGTGCAGAAAGTTCTTCACCTGATGCTTC 858 ||||||||||| | | |||||||||||||||||||||||||||||||| || |||||||| Sbjct 773 CGTGATGACTCGC-TGGATTCTGGGTCTGATGGTGCAGAAAGTTCTTCGCCGGATGCTTC 831 Query 859 TATGACAGACATCATTCCC-ATGCTTGACGAGCTTCACCCGCTTTTACTCTCAGAAGCTC 917 |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 832 TATGACAGACATCA-TCCCGATGCTTGACGAGCTTCACCCGCTTTTACACTCAGAAGCTC 890 Query 918 CTACTCGTGGTATTGTAGATGGTGAAGGATCTGATGCAGCTTCAGAGGGGCCAC------ 971 ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 891 CTAGTCGTGGTATTGCAGATGGTGAAGGATCAGATGCAGCTTCAGAGGGGCCACATAGGA 950 Query 972 -------------A--TAGGAGTAGTAGTGATGAAGGAATGGAGTCTGATGGTGACAGtg 1016 | ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 951 GTAGTAGTGATGAAGGTAGGAGTAGTAGTGATGAAGGAATGGAGTCTGATGTTGACAGTG 1010 Query 1017 aaagtcatggagaagaaggcgataacgagaatgaagatgaggaagaggatgaagaagaag 1076 |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || Sbjct 1011 AAAGTCATGGAGAAGAAGGCGACAACGAGAATGAAGATGAGGAAGAAGATGAAGAAG-AG 1069 Query 1077 aagatgaggaagagaaacaggaaaagaaggaagataaggacgacgaaagTAAATCTGCAA 1136 || |||||| || |||| |||||||| |||||||||||||||||||||||||| |||| Sbjct 1070 --GAAGAGGAACAGGAACATGAAAAGAAAGAAGATAAGGACGACGAAAGTAAATCAGCAA 1127 Query 1137 TCAAATGGACAGAGGCTGACCAAAGAAATGTTATGGATCTAGGAAGTCTTGAACTTGAAA 1196 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 TCAAGTGGACAGAGGCTGACCAAAGAAATGTTATGGATCTAGGAAGTCTTGAACTTGAAA 1187 Query 1197 GAAACCAGCGGTTGGAGAATCTTATTGCCAGGAGAAGGGCTCGTCACAATATGAGACTAA 1256 ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1188 GAAACCAAAGGTTGGAGAATCTTATTGCCAGGAGAAGGGCTCGCCACAATATGAGACTGA 1247 Query 1257 TGGCAGAAAGAAATCTTATTGATTTTGATAGTGCTGATATTCCCTTTAATATGCCGCCAA 1316 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1248 TGGCAGAGAGAAATCTTATTGATTTTGACAGTGCTGATATTCCCTTTAATATGCCGCCAA 1307 Query 1317 TCTCAACTGCAAGGCATAATCCATTTGATGTTTCATATGATTCGTATGATGATAT--G-- 1372 |||||||||| ||||| ||||||||||||| | |||||||||| ||||||||||| | Sbjct 1308 TCTCAACTGCTAGGCAGAATCCATTTGATGCTCCATATGATTCCTATGATGATATGGGAT 1367 Query 1373 -----CCTATCCCTGGTTCTGCCCCGTCCATTATGTTTGCGAGGAGAAATCCATTTGACC 1427 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct 1368 TACCACCTATCCCTGGCTCTGCCCCGTCCATTATGTTTGCGAGGAGAAACCCATTTGATC 1427 Query 1428 TTCCATATGAGCCAAATGAAGAAAAGCCAGACCTCAAAGG-TGACGGTTTTCAGGAAGAG 1486 ||||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||| Sbjct 1428 TTCCATATGAGCCAAATGAAGAAAAGCCAGACCTC-AAGGCTGACGGTTTCCAAGAAGAG 1486 Query 1487 TTCTCTTCTCAACAACCAAAGGATCCAA-TGTTCAGAAGACATGAAAGTTTCAGTGTAGG 1545 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1487 TTCTCTTCTCAACAACCAAAGGAT-CAAGTGTTCAGAAGACATGAAAGTTTCAGTGTAGG 1545 Query 1546 CCCATCAATGCTTGGAGGTCCTAGACATGATAGGCTACGACCTTTCTTTGTGTTAGAAAG 1605 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 1546 CCCATCAATGCTTGGAGGTCCTAGGCATGATAGGCTACGACCTTTCTTTGTGCTAGAAAG 1605 Query 1606 ATTAGCCAATGAGGGAACGAGCTATTATCCATTTGAAAGGCAGCTCAGTGAAGTTAGTGA 1665 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1606 ATTAGCAAATGAGGGAACGAGCTATTATCCATTTGAAAGGCAGCTCAGTGAAGTCAGTGA 1665 Query 1666 ATCAAAAGTTAGTTCTATTCCTGATACTGAATCTGTGTGCACAGTCCTGGAGGATGACGA 1725 ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| || Sbjct 1666 ATCAAAAGTCAGTTCGGTTCCTGATACTGAATCTGTGTGCACAGTCCTAGAGGATGATGA 1725 Query 1726 AAAGAAGGTGGATGAAAATAATGCTGACCGAGAAACCAAAATTGCTAAAGTTGATATGGT 1785 |||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| Sbjct 1726 AAAGAAGGTGGATGAACATAATGCTGATCGAGAAACCGAAATTGCTAAAGTTGATATGGC 1785 Query 1786 TTCTGACAATGATGAAGAAAATAA-CCATTCGGCTTCTGACCACGATGAAGAAAATAGTC 1844 ||||||| ||||||||||||| || |||||| ||||||||||| ||||||||||| || | Sbjct 1786 TTCTGACCATGATGAAGAAAA-AAGCCATTCAGCTTCTGACCATGATGAAGAAAAAAGCC 1844 Query 1845 ATTCAGCTTCTGACCATGATGAAGAAAAAAGCCATTCGTCCGAGGATTCCGATTTCGATG 1904 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1845 ATTCAGCTTCTGACCATGATGAAGAAAAAAGCCATTCGTCTGAGGATTCCGATTTCGATG 1904 Query 1905 AACAAGCTGATAGCAAAAAACTTCACCATGATGTGGCTGAGATAGTACTAGGAAGT-G-G 1962 ||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||| | | Sbjct 1905 AACAAGCTGATAGCAGAAAGCTTCATAATGATGTGGCTGAGATAGTACTGGGAAGTGGAG 1964 Query 1963 -TGAAACACACCATGAGCAATCGGACATGATGGAAGGAGAAACTTCTGATAAGGGAAAAC 2021 |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| | Sbjct 1965 AAGAAACACACCATGATCAATCGAACATGATGGAAGGAGAAACTTCTGATAAAGGAAATC 2024 Query 2022 TTGATG-A-AG----TCAGTGATAGTGATTCATCTTTATCAGAGAAAGAAGAAAAGATAC 2075 |||||| | || |||||||||||||||||||||||||||||||||||||||| || | Sbjct 2025 TTGATGAAGAGTATTTCAGTGATAGTGATTCATCTTTATCAGAGAAAGAAGAAAATATGC 2084 Query 2076 GTGATATCAGTGAAGATGAAGCAATGTTAATTTCAGAACAAGTAGTTGATCTTCATGAAG 2135 | |||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||| Sbjct 2085 GGGATATCAGTGAAGATGAAGCAATGTTGATTTCGGAACGGGTAGTTGATCTTCATGAAG 2144 Query 2136 AATTAGGGGCGTCTTCACTGCCTTCTTTTGGAGAATTAGAAATCAATATGGCTAGAGG-G 2194 ||| ||| |||||||| | |||||||||||||||||||||||||||| |||||| || | Sbjct 2145 AATCAGGTGCGTCTTCCCAGCCTTCTTTTGGAGAATTAGAAATCAATGGGGCTAG-GGTG 2203 Query 2195 GTGGAGGATGATTATCACCATGATGAAGCTCGTGCTGAAGAATCTTTCATTACTGCGCAT 2254 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2204 GTGGAGGATGGTTACCACCATGATGAAGCTCGTGCTGAAGAATCTTTCATTACTGCGCAT 2263 Query 2255 CCGTCACTTGACGAGTCAGCCATACATGTTCTTTGTGGTTTGGGGGACGGTGATCACGAG 2314 || |||||||| |||||||| || |||| ||||||||||||||| ||||| | |||||| Sbjct 2264 CCTTCACTTGATGAGTCAGCAATTCATGCTCTTTGTGGTTTGGGAGACGGCCACCACGAG 2323 Query 2315 GAACCTGTTTACGATTCGAGTCCTCCCTCAGGCAGTAGATTCCCATCATTTTCTTCCGTA 2374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2324 GAACCTGTTTACGATTCGAGTCCTCCCTCAGGCAGTAGATTCCCATCATTTTCTTCTGTG 2383 Query 2375 TCGTC-T--GATTACAAACCAGATCTACCTgaaaagaatggggaagaaatagaagaaaat 2431 ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2384 TCGTCGTCTGATTACAAACCAGATCTACCTGAAAAGAATGGGGAAGAAGTAGAAGAAAAT 2443 Query 2432 gaagagaaagaaCGTGAAGTTTATTCTGAAAGTATAGGTCCTGAGGAAATTCATTCTACT 2491 ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||| Sbjct 2444 GAAGAGAAAGAACATGAAGTTTATTCTAAAAGCATAGGTCCTGAGGAAATTCATTCCACT 2503 Query 2492 TCTAATGAGACTGAAACAAGGACAA-GCGAAGTAGGAGAGAA-TAGCATGCATGTTACAG 2549 ||||||||||||||||||||||||| | ||||||||||| || |||||||||||| ||| Sbjct 2504 TCTAATGAGACTGAAACAAGGACAAAG-GAAGTAGGAGA-AACTAGCATGCATGTAACAA 2561 Query 2550 GAGAGGCAAGCCTTGTCAT 2568 ||||||||||||||||||| Sbjct 2562 GAGAGGCAAGCCTTGTCAT 2580 Score = 1332 bits (721), Expect = 0.0 Identities = 916/1007 (91%), Gaps = 26/1007 (3%) Strand=Plus/Plus Query 2572 GGAGCAT-TCGACACCACTGGAAGAATCACCTGATGTGGTGCATGACATAGCTGAAACTT 2630 ||||||| | |||| ||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 2695 GGAGCATGT-GACAACACTGGAAGAATCACCTGATGTGGTACGTGACATAGCTGAAACTT 2753 Query 2631 CAGTAAACAAGTCAGTAGTTGAAGAGATAATGTACGAGGAAGAGGAAGCTCAAAAACAAA 2690 |||| |||| |||||||| ||||||||||||| |||||||||||||| | || ||||||| Sbjct 2754 CAGTTAACAGGTCAGTAGCTGAAGAGATAATGCACGAGGAAGAGGAATCCCAGAAACAAA 2813 Query 2691 AAGATGAAGTCAGTCCTCAAACATTCAATGCTGACATCCCAATAGATAGTTATGCCAGTT 2750 ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| || Sbjct 2814 AAGATGAAGCCAGTCCTCAAACATTCAATGCAGACATCCCAATAGATAATTATGCCACTT 2873 Query 2751 TGTCTTCTGGAGCAGTTGAGTATGTTGAGACGCATTCATTTAATGACGAAGATGTTGCAC 2810 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | | Sbjct 2874 TGTCTTCTGGAGCAGTTGAGTATGTTGAGACGCATTCTTTTAATGATGAAGATGTTCCGC 2933 Query 2811 AGTTGGAACAAGAACCAGTTCACTCATTAGTTCATGATGCTGAGGAAGAAACTCACAACG 2870 |||||||||||||||||| |||||||| ||||| ||||| ||||||||||| | || || Sbjct 2934 AGTTGGAACAAGAACCAGCTCACTCATCAGTTCTTGATGATGAGGAAGAAATTAACCCCG 2993 Query 2871 ACCAAACAATGGATATTGAAGTAGACTCTGTAAATGCTAGTGCCCAAAATGTGGGATCTG 2930 |||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| Sbjct 2994 ACCAAACAATGGATATCGAAGTAGACTCTGTAAATGCTGGTTCCCAAAATGTGGGATCTG 3053 Query 2931 AAGAAACAAGTCCATCTGAATCAGATAGAGAACTGACATGGTCAGATAAATCTGTGGTAG 2990 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 3054 AAGAAACAACTCCATCTGAATCAGATAGAGAACTGACTTGGTCAGATAAATCTGTGGTAG 3113 Query 2991 AACAATCATCTCTTGAACCTGGTGACGATCAAGTACCAACTCGTGCAGGTCCTGTGAGTG 3050 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 3114 AACAATCATCTCTGGAACCTGGTGAAGATCAAGTACCAACTCGTGCAGGTCCTGTTAGTG 3173 Query 3051 TCGTCTTTTCCCGCAACATCACTTTTCACGAGTATCACGATGCTCCTGAAGATACAACCG 3110 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3174 TCGTCTTTTCCCGCAACATCACTTTCCACGAGTATCACGATGCTCCTGAAGATACAGCGG 3233 Query 3111 AGTTATCTTGTTTGACGTCTGATACATCCTCTTCTCCAACAGAATCTCCCGAGTACACGA 3170 |||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||| Sbjct 3234 AGTTATCTTGTTTGACATCTGACACATCCTCCTCTCCAGCAGAATCTCCCGAGTACACGA 3293 Query 3171 CACCTATGGTTGGTGAAGGCTCAAGGGCAGAGTTTTTCCAAGAGGATATTTATGAGGAGC 3230 |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 3294 CACCTATGGTTGGTGAAGGCTCAAGGGCGGAATTCTTCCAAGAGGATATTTATGAGGAGC 3353 Query 3231 TAGACCATGTGGTGGAGCGATTAGAGCAGCTTACAGACTTGCATGCAATATCTCAAAGTC 3290 | ||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 3354 TTGACGATGTGGTGCAGCGATTAGATCAGCTTACAGACTTGCATGCAATATCTGAAAGTC 3413 Query 3291 CTCCTGAAATTATCACCGAAGAGGCAGACGAGATAAAAGAGATTGATGAAGGATTGTTGT 3350 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3414 CTCCTGAAATTATCACTGAAGAGGCAGACGAGATAAAAGAGATTGATGAAGGATTGTTGT 3473 Query 3351 CTGAACTTGACTCGATTGGAGACTTCAATGTTAAGGAAGTTGTGACAGATACTGAACCTG 3410 ||||||||||||||||||||||||||| |||||||||| | | |||| | Sbjct 3474 CTGAACTTGACTCGATTGGAGACTTCAGTGTTAAGGAA------A----T--TGAA---G 3518 Query 3411 GGCCATCTTCGATAGAAAATGCTATGAACCAGGCTGTTGTAGAGAGCATGGAAAAGCAAC 3470 |||| | ||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct 3519 ----ATCT---A--GAAAATGCTATTAATCAGGCTGTTGTAGAGAGCATGGACAAGCAAC 3569 Query 3471 CAAAGTCACCACAATCAGATAGTAGGTCTGGAGAAATCATGTGTGCAGTTGAAACCAAAC 3530 |||| ||||||||||||||| ||||| |||||||||||| ||||| ||||| | || ||| Sbjct 3570 CAAAATCACCACAATCAGATGGTAGGCCTGGAGAAATCAAGTGTGTAGTTGGATCCGAAC 3629 Query 3531 CATCGGAGTCTTCAGTTGACGAAAGTTCTATTGATGAAACAAACGTT 3577 |||| |||||||||||||| ||||||||||||||||||| ||||||| Sbjct 3630 CATCAGAGTCTTCAGTTGAAGAAAGTTCTATTGATGAAAAAAACGTT 3676 Score = 749 bits (405), Expect = 0.0 Identities = 608/699 (87%), Gaps = 42/699 (6%) Strand=Plus/Plus Query 3783 aaggagaagaagaggaggaaagtaaaccaaaagagaTAACAAAATCTGATGTTTTACTTG 3842 ||| ||||||||| |||||||||||||||||||||||||| ||| |||||||||| || Sbjct 3699 AAGAAGAAGAAGAAGAGGAAAGTAAACCAAAAGAGATAAC---ATCCGATGTTTTACCTG 3755 Query 3843 TCGAAACTCGAGCACTGGAAGAATTTCCCAAACCTTCTGAACTaaaaaaaGGGATGGCAA 3902 ||||||||||| ||||||||||||| |||||||||||||||| |||| | |||||| ||| Sbjct 3756 TCGAAACTCGATCACTGGAAGAATTCCCCAAACCTTCTGAACCAAAAGAGGGGATGTCAA 3815 Query 3903 TGGAAGTAATCTCTGAAGGAGTGGTAATCCCCACAAAAGCTGCTGGTCCTAGTAATGTAA 3962 ||||||||||||||||| ||||||| || |||||| |||| ||||||||||||||||||| Sbjct 3816 TGGAAGTAATCTCTGAAAGAGTGGTGATTCCCACAGAAGCAGCTGGTCCTAGTAATGTAA 3875 Query 3963 CACTAAGTGATGAGGTTGTGACTGAGAAAGCAAAAGCTGAGACCACTGCAAGCAACACTG 4022 || |||||||||| |||||||| ||| |||| |||||||||||||| ||||||||||||| Sbjct 3876 CATTAAGTGATGAAGTTGTGACCGAGGAAGCGAAAGCTGAGACCACCGCAAGCAACACTG 3935 Query 4023 ATGCAAATGTCCAGAGTCCTGAGTCCAAAGAAACTCCAGAGAATTCG-GTGG-AAACTAT 4080 ||| |||||||||||||||| ||| ||||||| ||||||||| ||| | || |||| || Sbjct 3936 ATGTGAATGTCCAGAGTCCTGTGTCGAAAGAAAGTCCAGAGAACTCGAG-GGAAAAC-AT 3993 Query 4081 TGCAGAGCAAAAAGGAAAGTAGGAGAAGAAGACGAAGTCCAACCCTTCAAGCTCGAGTTC 4140 ||||||||||||||||||| |||||||||| | |||| || | || || | Sbjct 3994 TGCAGAGCAAAAAGGAAAGAAGGAGAAGAAAATGAAG---AA----T-AA----GA-CT- 4039 Query 4141 AAGCTCAAGCTCTAGTTCGAGTGACTCAGATTG--AAAATTAAAGGGTAATACATCATCT 4198 || ||||||||||||||| |||||||||||||| ||||| |||||||||| | ||||| Sbjct 4040 AA-CTCAAGCTCTAGTTCCAGTGACTCAGATTGAAAAAATCAAAGGGTAAT--A-CATCT 4095 Query 4199 CAAACTCAAGTAAATATATCTTTGTTAAAGGGTAATGATAGGCACTTCTGGGTTTTG--t 4256 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | Sbjct 4096 CAAACTCAAGTAAATATATCTTTGTTAAATGTTAATGATAGGCACTTCTGGGTTTTGTTT 4155 Query 4257 tttttttC-AT----CTGTGTCCTCTGTT-TTAAAAGGGGCAAGAAGTA-GCCGCTAATC 4309 |||||||| || |||||||||||||| |||||||| |||||||| | ||| |||||| Sbjct 4156 TTTTTTTCAATCAGACTGTGTCCTCTGTTATTAAAAGGTGCAAGAAG-AGGCCACTAATC 4214 Query 4310 ATATTTTTATACCAAgttttctccttcctttgtattggttttcttgtgtgtttgtgtttc 4369 ||| |||| ||||||| ||| | | ||||||||||||||||||||||||||||||||||| Sbjct 4215 ATACTTTTGTACCAAG-TTT-T-C-TCCTTTGTATTGGTTTTCTTGTGTGTTTGTGTTTC 4270 Query 4370 cttttctcttctttcttcagcttt-cATATTTATCGATTTGATTGATTTGTATCTCTTGA 4428 |||||||| ||||||||||||||| ||||||||| |||||||||||||||||| | |||| Sbjct 4271 CTTTTCTCCTCTTTCTTCAGCTTTTCATATTTATTGATTTGATTGATTTGTATTTTTTGA 4330 Query 4429 AACCAGAGAGGTTTTCTCAGGGTTTTGGATTGTGTCTTT 4467 ||| | |||||||| |||||||||||| ||| |||||| Sbjct 4331 AACTATTGAGGTTTTTTCAGGGTTTTGGTTTGAGTCTTT 4369 Score = 106 bits (57), Expect = 2e-21 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 1816 GGCTTCTGACCACGATGAAGAAAATAGTCATTCAGCTTCTGACCATGATGAAGAAAAAAG 1875 |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1783 GGCTTCTGACCATGATGAAGAAAAAAGCCATTCAGCTTCTGACCATGATGAAGAAAAAAG 1842 Query 1876 CCATTC 1881 |||||| Sbjct 1843 CCATTC 1848 Score = 60.2 bits (32), Expect = 1e-07 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1850 GCTTCTGACCATGATGAAGAAAAAAGCCATTC 1881 |||||||||||||||||||||||||||||||| Sbjct 1784 GCTTCTGACCATGATGAAGAAAAAAGCCATTC 1815 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 171449366365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5