BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17930.1
Length=2634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488658 jgi|Araly1|488658|fgenesh2_kg.6__1792__AT5G17930.1 3797 0.0
> Ahg488658 jgi|Araly1|488658|fgenesh2_kg.6__1792__AT5G17930.1
Length=2531
Score = 3797 bits (2056), Expect = 0.0
Identities = 2360/2504 (94%), Gaps = 31/2504 (1%)
Strand=Plus/Plus
Query 91 TTCGAATCAATTCTCGTCTTTCAAGTGTTGGCAGAGAATCTATTGGGTCAGAT-AACATG 149
|||||||| ||||||||||||||||||| ||||||||||||||||| ||| | ||||||
Sbjct 53 TTCGAATCTGTTCTCGTCTTTCAAGTGTTTGCAGAGAATCTATTGGGCCAGCTAAACATG 112
Query 150 GGGAGCTCTCGTCATGAAAAGCGAAAAGAGGCTCGCTTGCAGAAGAACCAGAAAAAACAT 209
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 113 GGGAGCTCACGTCATGAAAAGCGAAAAGAAGCTCGCTTGCAGAAGAACCAGAAAAAACAT 172
Query 210 GAATCTTGGCTTCAGCGTCATAAGTCGGAAAAGGAGAAACGAGTATCATCATCTGCTTCA 269
|||||||||||||||||||| |||||||||||||||||||||| || ||| | | |||
Sbjct 173 GAATCTTGGCTTCAGCGTCAGAAGTCGGAAAAGGAGAAACGAG--TC-TCA--T-CATCA 226
Query 270 GCTCAGAAGTCTGGTGATGTGATCAAGTCTGAAGATTTTCGCCAGATAAGTGATAGTGTA 329
||||||||| ||||||| ||||||||||||||| |||||| |||||||||| |||||| |
Sbjct 227 GCTCAGAAGACTGGTGAGGTGATCAAGTCTGAAAATTTTCACCAGATAAGTAATAGTGAA 286
Query 330 ACTGAACATATGGAATCAAGTAGTCCTAGTGGAAACAAAGACCATGGAAAGTCTTTTATA 389
||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 287 ACTGAACATATGGAATCAAGTAGGCCTAGTGGAAACAAGGATGATGGAAAGTCTTTTATA 346
Query 390 CCTaagaaagaagaggttagagtcaaatcaaaggagaagaagatgcaaaaagtagagaga 449
| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 347 CATAAGAAAGAAGAGGTTAGAGTCAAATCAAAGGAGAAGAAGATGCAGAGAGTACAGAGA 406
Query 450 ataaagGATCTGAATAGACCAAGGAAGAAGACGAATTTTGAAGAGTTTCTTGAAATGGAT 509
|| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 407 ATGAAGGATCTGAATAGACCAAAGAAGAAGACAAAATTTGAAGAGTTTCTTGAAATGGAT 466
Query 510 ACACCAACTGTAATATCTGGAGACCAGGATGCTGAACTTGAGAGGAGGCTCGCAAAGAAG 569
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 467 ACACCAACTGTGATATCTGGTGACCAGGATGCTGAACTTGAGAGAAGGCTCGCAAAGAAG 526
Query 570 CTCAAGATAAAGAAAGGAAAACTAAGGGGCATGGATGATGGATTGAATGATTTGTTCGAA 629
|||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 527 CTCAAGGTAAAGAAAGGAAAACTAAGGGGCTTGGATGATGGATTGAACGATTTGTTCGAA 586
Query 630 GGACTTCCATCTGTACTTGATTCGATGGGATCTGAACTCGGTGATTCCCGAAAGAAACGT 689
|||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||
Sbjct 587 GGACTTCCATCTGTACTTGATTCGATGGAATCTGAACTTGGTGATTCTCGTAAGAAACGT 646
Query 690 AAGAAAAAGAGATCAGAAGAAAAACAGGACCATGAGGATGTCGATGAGCTAGCAAATGAA 749
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 647 AAGAAAAAGAGATCCGAAGAAAAACATGACCATGAGGATGTCGATAAGCTAGCAAATGAA 706
Query 750 GATTTGGAGCATGAAGAATCTGAATTTTCTGACGAGgaaagcgaagaagagcctgtagga 809
|||||||||| ||||||||||| ||||| | | |||||||||| ||||
Sbjct 707 GATTTGGAGCGTGAAGAATCTG-ATTTT-T-----------C--TGAAGAGCCTGCAGGA 751
Query 810 aaaagagaccgtaaaaggcataagaagaagaagaagtctgtagatgaagaactagaaagT 869
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 752 AAAAGAGACCGTAAACGGCAT---AAGAAGAAGAAGTCTGTAGATGAAGATCTAGAAAGT 808
Query 870 GATCTGATGAATATCACAGATGATGGTGAGTCAGAGACTGTTAATTATCACGATTCACCG 929
|||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 809 GATCCGATGAATATCACAGGTGATGGTGAGTCAGAGACTATTACTTATCACGATTCACCG 868
Query 930 TCAAGCTTGGAGAAAGTAGATA-CTCCTTTGCATGAGCGTAAGCCAGAGAGCAGCAGCAA 988
|||||||||||||||||||| | |||||||||| |||| |||||||||||| ||||||||
Sbjct 869 TCAAGCTTGGAGAAAGTAGA-ACCTCCTTTGCACGAGCATAAGCCAGAGAGTAGCAGCAA 927
Query 989 GTATGTTGCTCCTCATTTGAGATCTCAGGCCAAAAGTGAATCTGAAGAACTCACTAAAAT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GTATGTTGCTCCTCATTTGAGATCTCAGGCCAAAAGTGAATCTGAAGAACTCACTAAAAT 987
Query 1049 GCGTACACGGATAAAAGGTCTTCTCAATAAGATGGCAGAATCCAATGTAGAAACAATAAC 1108
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 988 GCGTACACGGATAAAAGGTCTTCTCAATAAGATGGCTGAATCCAATGTTGAAACAATAAC 1047
Query 1109 TGCAGAACTTGCCACAATCTATCGTTCTGTTGCGAGAAGTGTGTCCTCTCAGATTTTCTG 1168
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1048 TGCAGAACTTGCCTCAATATATCGTTCTGTTGCGAGAAGTGTGTCCTCTCAGATTTTTTG 1107
Query 1169 TGAAGAGGTTTTGACAACTTATGCGAGAGGCAATGAACAGTACGCTGTATTTGCTTCTTT 1228
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TGAAGAAGTTTTGACAACTTATGCGAGAGGCAATGAACAGTACGCTGTATTTGCTTCTTT 1167
Query 1229 CATAGCCGGCATGGCGTGTCTAGTTGGAATGGATTTTAGTGCAAAGCTAATTGCATCACT 1288
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1168 CATAGCTGGCATGGCGTGTCTAGTTGGAATGGATTTTAGTGCAAAGCTTATTGCATCACT 1227
Query 1289 TGCTAAATCTTTCGAGGATGAATATCAGAAGGAAGACAGTCTCTCTTTAAATGGGATTTC 1348
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1228 TGCTAAATCTTTCGAGGATGAATATCAGAAAGAAGACAGTCTCTCTTTAAATGGGATTTC 1287
Query 1349 TCTTTTGCTTTCTTATCTTTGCATATTGGGAGTTTGCTCCAGTGATCTTATATATGATTT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1288 TCTTTTGCTTTCTTATCTTTGCATATTGGGAGTTTGCTCCAGTGATCTTATTTATGATTT 1347
Query 1409 CTTAATGACATTGGGGAAACGGCTGACTAAAGTTGATGCTTTCACTATCACCACTGTTTT 1468
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1348 CCTAATGACATTGGGGAAACGGCTGACTAAAGTTGATGCTTTCACTATCACAACTGTTTT 1407
Query 1469 AGATTGCTGTGGAATGAAAATAAGAAGTGATGATCCTCTGGCTATGAAAACATTCATCAT 1528
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1408 AGATTGTTGTGGAATGAAAATAAGAAGTGATGATCCTTTGGCTATGAAAACATTCATCAT 1467
Query 1529 CAGCATCCAGAACAAGGCAAATGAATTGAAAACCTCCTCCGATGGCCAGACACAAATGAA 1588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 CAGCATCCAGAACAAGGCAAATGAATTGAAAACCTCCTCCGATGGCCAGACACAAATGAG 1527
Query 1589 TAACATGATGATGGAAAAGATGCTTGAAACCATTTCCGCAATAAAGAACAACAAGTTGAG 1648
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1528 TAACATGATGATGGAAAAGATGCTTGAAACCATTTCTGCAATAAAGAACAACAAGTTGAG 1587
Query 1649 AGCCAAAGAGGATTCCGTCCAGAACACAAGGGTAAAGAAGTGGCTTCAAAAGTTGAGAGT 1708
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 AGCTAAAGAGGATTCCGTCCAGAACACAAGGGTAAAGAAGTGGCTTCAAAAGTTGAGAGT 1647
Query 1709 AGAAGAAGTGTTATTAAGAGGGCTTACATGGAGCAAGCTGCTTGACCCCGAGAAGAAGGG 1768
||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 GGAAGATGTATTGTTAAGAGGGCTTACATGGAGCAAGCTGCTTGACCCCGAGAAGAAGGG 1707
Query 1769 TCAGTGGTGGCTTTCTGGCGATTTGGTGGTTGACTCAAACACCGCTGAAGATATAGCAGA 1828
|||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1708 TCAGTGGTGGATATCTGGCGATTTGGTGGTTGACTCAAACACCGCTGAAGATGTAGCAGA 1767
Query 1829 AACAATGGATGCAGAGGTTGTTGAGGCCCAAAAAATGTTAAAGCTAGCTGAGGCACAGAG 1888
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1768 AACAATGGATGCAGAGGTTGTTGAGGCTCAGAAAATGTTAAAGCTAGCTGATGCACAGAG 1827
Query 1889 GATGAATACAGATTCCAGAAAAGCAATATTTTGTGTGATCATGAGTAGTGAGGACTACAT 1948
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1828 GATGAATACAGATTCCAGAAAAGCTATATTTTGTGTGATCATGAGTAGTGAGGACTACAT 1887
Query 1949 CGATGCATTCGAGAAACTTCTTAGATTGGATTTGCCAGGAAAACAGGACAGAGAGATCAT 2008
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 TGATGCATTCGAGAAACTTCTTAGATTGGATTTGCCAGGAAAACAGGACAGAGAGATCAT 1947
Query 2009 GAGGGTTCTAGTTGAATGCTGTTTACAGGAGAAAGCATTCAACAAGTTCTACACAGTCCT 2068
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1948 GAGGGTTCTAGTTGAATGCTGTTTACAGGAGAAAGCATTTAACAAGTACTACACAGTCCT 2007
Query 2069 TGCTTCAAAGTTGTGCGAGCACGACAAAAATCATAAGTTTACACTGCAGTATTGCATTTG 2128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 TGCTTCAAAGTTGTGCGAGCACGACAAAAATCATAAGTTTACACTGCAGTATTGCATTTG 2067
Query 2129 GGACCATTTTAAAGAACTAGAGTCGATGTCACTTCAGAGATCGATGCATCTGGCGAAATT 2188
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 GGACCATTATAAAGAACTAGAGTCGATGTCACTTCAGAGATCGATGCATCTGGCGAAATT 2127
Query 2189 CGTGGCAGAGATTATTGTAACCTTCAATCTTTCTCTTGCTGTTCTCAAATCCGTTGACTT 2248
||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct 2128 TGTGGCAGAGATTATTGTGACCTTCAATCTTTCTCTTGCGGTCCTCAAATCCGTGGACTT 2187
Query 2249 AGCAAATCCAGTGGAGTTAACTCCAAAACGAATCATGCACTTTCGAATGCTGTTCGAGGC 2308
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2188 GGCAAATCCAGTGGAGTTAACTCCAAAACGAATTATGCACTTTCGAATGCTGTTTGAGGC 2247
Query 2309 CATCTTTGAGCACCCTGAGAATCTTGTGTGGAACTTGTTCACACGCATAGCCTTGAATCC 2368
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 CATCTTTGAGCACCCCGAGAATCTTGTGTGGAACTTGTTCACACGCATAGCCTTGAATCC 2307
Query 2369 GGAATATGAAGCTCTACGAGATGGCATCAAGTTCTTTGTGAAGGAATATGTTGTGAAAAA 2428
|| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 AGACTATGAAGGTCTGCGCGATGGCATCAAGTTCTTTGTGAAGGAATATGTTGTGAAAAC 2367
Query 2429 TAACAAGGCAATCTATGGGAAATTCAGGAAAGCTAAAGAAGCACTTAACAATGCAGAAGG 2488
||| ||||| |||| |||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 2368 TAATAAGGCGATCTCTGGGAAATTCAGGAAAGCGAAAGAAGCTCTTAACAACGCAGAAGG 2427
Query 2489 ATTACTCATGTGATCCTGTTGTTGCCACCAACAATTTTGAAG-TCTCTTT-T-T-GTTGT 2544
||| |||||||||| | |||||||| |||||||||||||||| ||||||| | | |||||
Sbjct 2428 ATTGCTCATGTGATTCGGTTGTTGCAACCAACAATTTTGAAGCTCTCTTTATGTTGTTGT 2487
Query 2545 ACACACTATCTTCTAATTTAATTAAAGTTTCTACTTTGTAAGAT 2588
||||||| |||||||| |||||||||||||||||||| || |||
Sbjct 2488 ACACACTTTCTTCTAACTTAATTAAAGTTTCTACTTTCTATGAT 2531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99339358960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5