BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G17950.1

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg893712 jgi|Araly1|893712|Al_scaffold_0006_1708                    270    4e-72


> Ahg893712 jgi|Araly1|893712|Al_scaffold_0006_1708
Length=1587

 Score =  270 bits (146),  Expect = 4e-72
 Identities = 158/164 (96%), Gaps = 0/164 (0%)
 Strand=Plus/Plus

Query  72    TGAAAATATAAGCTTTGGTGTGAACGTGAAAGACACAATATTCTCGCTTTCGGAGAAGGG  131
             |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| 
Sbjct  1395  TGAAAATATAAGCTTTGGTGTGAACGTGAAAGACGCCATATTCTCGCTTTCGGAGAAGGA  1454

Query  132   CTGGGACGTGGAGAAAGGGATACAAACCCTAGCTGATATGGGTCTCATCTCTATATCTAG  191
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1455  TTGGGACGTGGAGAAAGGGATACAAACCCTAGCTGATATGGGTCTCATCTCTATATCTAG  1514

Query  192   GGAAAGAGGAATCATCATGCATTGTTTGGTACGCTTAATGTCTA  235
             |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct  1515  GGAAAGAGGAATCAGCATGCACTGTTTGGTACGCTTAATGTCTA  1558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12934744671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5