BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17950.1 Length=363 Score E Sequences producing significant alignments: (Bits) Value Ahg893712 jgi|Araly1|893712|Al_scaffold_0006_1708 270 4e-72 > Ahg893712 jgi|Araly1|893712|Al_scaffold_0006_1708 Length=1587 Score = 270 bits (146), Expect = 4e-72 Identities = 158/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 72 TGAAAATATAAGCTTTGGTGTGAACGTGAAAGACACAATATTCTCGCTTTCGGAGAAGGG 131 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 1395 TGAAAATATAAGCTTTGGTGTGAACGTGAAAGACGCCATATTCTCGCTTTCGGAGAAGGA 1454 Query 132 CTGGGACGTGGAGAAAGGGATACAAACCCTAGCTGATATGGGTCTCATCTCTATATCTAG 191 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1455 TTGGGACGTGGAGAAAGGGATACAAACCCTAGCTGATATGGGTCTCATCTCTATATCTAG 1514 Query 192 GGAAAGAGGAATCATCATGCATTGTTTGGTACGCTTAATGTCTA 235 |||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1515 GGAAAGAGGAATCAGCATGCACTGTTTGGTACGCTTAATGTCTA 1558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12934744671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5