BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17970.1
Length=2343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893714 jgi|Araly1|893714|Al_scaffold_0006_1710 2375 0.0
> Ahg893714 jgi|Araly1|893714|Al_scaffold_0006_1710
Length=2367
Score = 2375 bits (1286), Expect = 0.0
Identities = 1994/2329 (86%), Gaps = 76/2329 (3%)
Strand=Plus/Plus
Query 49 CATGTGTTCCCTAGCTTCTGCGGGGAAGATGTACGT-AGAAACTTTCTAAGTCAT-TTAC 106
||||| || || ||||| ||||| | |||||| ||| || ||||||||||| ||| || |
Sbjct 58 CATGTCTTTCCGAGCTTTTGCGGAGCAGATGTGCGTAAG-AACTTTCTAAGCCATCTT-C 115
Query 107 ACAAGGAGCTGCAACATAATGGAATTGATGCATTTAAAGATGGTGGAATCAAGAGAAGTC 166
| |||||||| |||| || ||||| ||||||| |||||| |||||||||||||||||
Sbjct 116 AAAAGGAGCTACAACTTAGGGGAATCAATGCATTCAAAGATCATGGAATCAAGAGAAGTC 175
Query 167 GTTCCATATGGCCTGAGCTTAAACAAGCTATATGGGAATCAAAGATTTTC-ATTGTTGTT 225
| |||||||||||||| ||||||||||| || |||||||||| || |||| || || |||
Sbjct 176 GATCCATATGGCCTGAACTTAAACAAGCCATCTGGGAATCAAGGA-TTTCTATAGTCGTT 234
Query 226 CTTTCCAAG-AACTACGCTGGTTCGTGCTGGTGCTTAGACGAATTGGTCGAGATCATGGA 284
|| | |||| |||||||||||||| |||||||||| || || ||| | |||||||||||
Sbjct 235 CTCT-CAAGTAACTACGCTGGTTCAAGCTGGTGCTTGGATGAGTTGCTAGAGATCATGGA 293
Query 285 GTGCAGGGAAGTTGTTGGGA-AGACATTGGTG-CCGATTTTCTATGATGTGGATCCAT-C 341
|||||||||| || ||||| | |||||| || | | |||||||||| |||||||||| |
Sbjct 294 ATGCAGGGAAGCTG-TGGGACAAACATTGCTGACAG-TTTTCTATGAGGTGGATCCATCC 351
Query 342 TAGTGTAAGAAAACAGACTGGAGATTTTGGAAAGGCT-TTTGACAAGATTTGTGATGTG- 399
| ||| ||||||||||| |||| |||||| |||| | ||||| || | ||| || |
Sbjct 352 GA-TGTTAGAAAACAGACAGGAGCTTTTGGGAAGG-TCTTTGAGAAAACTTG-CTTGGGA 408
Query 400 AGAACAGAGGAAGAGAGGCAGAGATGGAGGCAAGCTTTGACGA-ATGTTGGTAATAT-TG 457
||||||| ||||||| ||||||||||| ||||||||| || | |||||| |||| | |
Sbjct 409 AGAACAGTTGAAGAGACGCAGAGATGGAAGCAAGCTTTAAC-AGATGTTGCTAATGTCT- 466
Query 458 CCGGCGAGTGCTCTTCGAAATGGGACAATGACGCCA-AAATGATTGA-AAAGATCGTTGC 515
| ||| | |||||| |||||||||||||| | || |||||||| ||| ||||||||
Sbjct 467 CTGGCTATTGCTCTGAAAAATGGGACAATGAAG-CATGTATGATTGAGAAA-ATCGTTGC 524
Query 516 TTATGTTTCTGAAGAGCT-ATTTTGCTTCACTTCTTCGACGGATTTCGAAGATTTACTTG 574
||||||| |||||| | | ||||| |||| |||| | ||||||||| |||||| |||
Sbjct 525 GGATGTTTCGGAAGAGATGA-ATTGCTGCACTCCTTCAAAGGATTTCGACGATTTAGTTG 583
Query 575 GATTGGAAGCTCATGTTGCAAATTTGAAATCAATGTTAGGTCTAGAGTCTAATGAAGTGA 634
|||||||||||||||| || || ||||| || ||||| ||||| |||||||||| ||||
Sbjct 584 GATTGGAAGCTCATGTCGCGAAGTTGAATTCGCTGTTATGTCTACAGTCTAATGACGTGA 643
Query 635 AGATGATAGGTG-TTTGGGGTCCTGCTGGAATAGGGAAGACCACTATCACGAGGA-TTTT 692
||||||||| | ||||||||||| |||||| || |||||||| || | | || |||
Sbjct 644 GGATGATAGG-GATTTGGGGTCCTATTGGAATCGGTAAGACCACCATTGCCA-GAGCTTT 701
Query 693 ATACAATCAACTTTCTTCATCTAATGATGACGACTTTCA--ATTGTTCATTTTCATGGAG 750
||||||||||||||| | ||| ||| ||| || ||||| | || |||||||||||
Sbjct 702 ATACAATCAACTTTC-T--TCTGATGGTGATGAATTTCAGCA-AAATC-TTTTCATGGAG 756
Query 751 AATGTTAAGGGAAGCTA-TAGGAGAAAGGAAA-TCGATGGTTATAGCA-TGAAGTTGCAT 807
||||||||| ||||| | || |||||| ||| | |||||||| || | ||||| |||||
Sbjct 757 AATGTTAAGAGAAGC-AGTAAGAGAAA-CAAACTTGATGGTTACAG-ACTGAAGCTGCAT 813
Query 808 TTACGAGAAAGGTTTCTCTCTGAAAT-TACCACCCAAAGAAAGATAAAGGTAAGCCATTT 866
|||| |||||| |||||||||||||| | || |||||| || ||||| ||||||||||
Sbjct 814 TTACAAGAAAGATTTCTCTCTGAAATGT-TCAACCAAAGGAATATAAATATAAGCCATTT 872
Query 867 AGGTGTAGCACAAGAAAGGCTAAAGAATCAGAAAGCTCTTATTGTTCTTGATGATGTTGA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 873 AGGTGTAGCACAAGAAAGGCTAAAGAATCAGAAAGCTCTTATTGTTCTTGATGATGTAGA 932
Query 927 TGAACTGGAACAACTACGTGCCTTGGCAGATCAAACTCAATGGGTTGGTAATGGAACCAG 986
||| | |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 933 TGATGTAGAACAACTACATGCCTTGGCAGATCAAACTCAATGGTTTGGTAATGGAACCAG 992
Query 987 AATT-TTAGTTACTACAGAAGATAGACAGCTTTTGAAGGCTCATGGGATT-ACTCATGTA 1044
|| || || | ||||||||||| |||||||||||| |||||||||||| | ||||||
Sbjct 993 GGTTATT-GTGATTACAGAAGATAAACAGCTTTTGAAAGCTCATGGGATTGA-TCATGTC 1050
Query 1045 TATGAAGTG-GAT-TATCCATCTAGAGATGAAGCCTTA-AAGATCTTGTGTCAATGTGCT 1101
||||| ||| | | | |||||||| |||||||||||| || ||||| |||| || ||||
Sbjct 1051 TATGACGTGTG-TCT-TCCATCTAAAGATGAAGCCTTTCAA-ATCTTATGTCGATTTGCT 1107
Query 1102 TTCGGAAAAAACTCGGCACCAGAAGGATACAATGATCTAGCTGTTGAAGTTGTGGAACTT 1161
|| ||||||| |||||| |||||||| ||| ||||| ||||||||||||||| |||||
Sbjct 1108 TTTGGAAAAACCTCGGCCCCAGAAGGCTACTATGATGTAGCTGTTGAAGTTGCAAAACTT 1167
Query 1162 GCAGGATATCTTCCTTTAGGTCTCAGCGTTTTAGGTGCATCTTTGCGAGGGATGAGTAAG 1221
|| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1168 GCTGGAGATCTTCCCTTAGGTCTCAGCATTTTAGGTGCATCTTTGCGAGGGATGAGAAAG 1227
Query 1222 AAAGAGTGGATAAACGCTCTACCGCGACTTAGAACTAGTTTGAATGGGAAAATAGAGAAA 1281
| |||||||||||||| |||||| | |||||||| ||| | ||||||||||| || |||
Sbjct 1228 GATGAGTGGATAAACGCGCTACCGAGGCTTAGAACCAGTCTAAATGGGAAAATCGAAAAA 1287
Query 1282 CTACTAAGAGTATGTTATGAAGGGTTAGATGAGAAAGATAAGGCTATCTTTCTTCATATC 1341
||| || ||| ||| ||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 1288 CTATTAGGAGCATGCTATGATGGGTTAGATGAGAAAGATAAGGCTCTGTTTCTTCATATC 1347
Query 1342 GCGTGCTTATTCAATGGC-AAGAATGTTGATCGTGTGAAGCTGTTGCTTGCTAAG-AGTG 1399
||||| || ||||||||| || || ||||||||||||||| |||||||| || ||||
Sbjct 1348 GCGTGTTTGTTCAATGGCGAA-AAGGTTGATCGTGTGAAGGAATTGCTTGC-AATTAGTG 1405
Query 1400 CATTGGATGTAGAATTTGGACTTAAAGTTCTTGTTGACAGATCTCTTATACACATA-GAT 1458
||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||| | |
Sbjct 1406 CATTGGATGCAGAATTTGGACTTAAAGTCCTTAATGACAGATCTCTTATACATATATG-T 1464
Query 1459 GCTGATGGATATATAGTCATGCATTGTTTGCTACAACAATTGGGTAAAGAAATCACTCGG 1518
||||||||||||||||| |||||||||||| |||||||| ||||||||||||| | |||
Sbjct 1465 GCTGATGGATATATAGTAATGCATTGTTTGTTACAACAAATGGGTAAAGAAATTATTCGA 1524
Query 1519 GGACAGTGTCTCGACGAGCCCGGGAAACGTAAGTTTCTAGTTGATTCTTTGGAGATTTCA 1578
||||| |||||| |||| ||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1525 GGACAATGTCTCCACGACCCCGGGAAAGGTAAGTTTATAGTTGATGCTTTGGAGATTTCA 1584
Query 1579 GATGTTCTTGCAGATGAAACCGGTACAGAAACTGTTTTAGGAATATCATTAGATATGTCT 1638
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1585 GATGTACTTGCAGATGAAACCGGTACAAAAACTGTTTTAGGAATATCATTAGATATGTCC 1644
Query 1639 GAAATTGAAGATCAAGTGTATGTAAGTGAAAAAGCCTTTGAGAAAATGCCTAATCTCCAA 1698
||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1645 GAAATCGATGGTCAAGTGTATATAAGTGAAAAAGCCTTTGAGAAAATGCCTAATCTCCAA 1704
Query 1699 TTCTTGTGGCTATACAAGAAT-TTCCCAGATGAAGCAGTCAAGTT-GTACTTACCTCACG 1756
|||||| |||||||||| | | |||| ||| |||||| | |||| | ||||||||||||
Sbjct 1705 TTCTTGAGGCTATACAATAGTATTCCT-GATAAAGCAGCCGAGTTTG-ACTTACCTCACG 1762
Query 1757 GTTTGGATTATCTACCACGTAAACTTAGATTACTACATTGGGATTCGTATCCGAAAAAAT 1816
| || |||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 1763 GCTTAGATTATCTACCACGTAAACTTAGATTACTACATTGGGATTCGTACCCTATAAAAT 1822
Query 1817 GTTTGCCTTCTAAGTTTCGACCCGAATTTCTTGTGGAACTTACTATGAGAGATAGCAAGC 1876
|| |||| ||||||||||| || ||||||||||| |||||||||||| ||||||||||||
Sbjct 1823 GTATGCCCTCTAAGTTTCGTCCTGAATTTCTTGTCGAACTTACTATGCGAGATAGCAAGC 1882
Query 1877 TGGAGAAGCTCTGGGAAGGTATTCAGCCACTGAAAAGCCTCAAGCGTATGGATCTGAGTG 1936
| ||||| || |||||||||||||||||||||| ||| |||||| ||||||| |||| |
Sbjct 1883 TCGAGAAACTTTGGGAAGGTATTCAGCCACTGACAAGTCTCAAGTATATGGATTTGAGCG 1942
Query 1937 CATCCACAAAGATTAAAGATATTCCAAACCTATCAAGAGCAACAAATCTGGAGAAGTTGT 1996
|||||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1943 CATCCACAAACATTGGAGATATTCCAAACCTCTCAAGAGCAAAAAATCTGGAGAAGTTGT 2002
Query 1997 ATCTTAGGTTCTGCAAAAATTTGGTCATAGTTCCTTCGTCTTG-TCTACAGAATCTTCAT 2055
|||||||||||||| |||||||||||| ||||||||| ||| | | |||| |||||| ||
Sbjct 2003 ATCTTAGGTTCTGCGAAAATTTGGTCACAGTTCCTTCTTCT-GCTTTACAAAATCTTAAT 2061
Query 2056 AAGCTCAAAGTCTTGGACATGTCTTGTTGCATAAAACTGAAGAGTCTGCCAGAC-AACAT 2114
||||| ||||| ||||||||||||||||||||||||||||||| ||| ||| || |||||
Sbjct 2062 AAGCTAAAAGTGTTGGACATGTCTTGTTGCATAAAACTGAAGACTCTTCCA-ACCAACAT 2120
Query 2115 CAACTTGAAATCCCTCAGTGTCCTTAATATGAGAGGATGCTCGAAGCTGAATAACTTTCC 2174
||||||| |||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 2121 CAACTTGGAATCCCTCAGTGTCCTTAATCTGAGAGGATGCTCGAAGCTGAAGAGGTTTCC 2180
Query 2175 -TTTGATTTCAACGCAGATTCAGTTCATGTCTCTAGGCGAAACTGCGATAGAGAAAGTGC 2233
||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||
Sbjct 2181 GTTT-ATTTCAACGCAGATTCAATTCATGTCTCTTGGGGAAACAGCGATAGAGAAAGTGC 2239
Query 2234 CTTCAGTAA-TCAAGTTATGTTCTCGGCTTGTCTCATTGGAGATGGCGGGATGTAAGAAC 2292
|||| | || |||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 2240 CTTC-GCAAATCAAGTTATGTTCTCGGCTTGTTTCATTGGAAATGGCGGGTTGTAAGAAC 2298
Query 2293 CTTAAAACATTACCATATTTGCCTGCAAGTATAGAGATCGTGGACATAT 2341
|||| |||| ||||| ||| ||||||||||||||||| |||||| |||
Sbjct 2299 CTTAGAACAATACCACCTTTCCCTGCAAGTATAGAGATTGTGGAC-TAT 2346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88255097665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5