BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17980.1
Length=3150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941312 jgi|Araly1|941312|scaffold_601856.1 4451 0.0
Ahg906707 jgi|Araly1|906707|Al_scaffold_0003_3835 346 6e-94
> Ahg941312 jgi|Araly1|941312|scaffold_601856.1
Length=3204
Score = 4451 bits (2410), Expect = 0.0
Identities = 2925/3173 (92%), Gaps = 38/3173 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACAACCCGGAAACTGGTAGTAGAAGTAGTAGACGCAAAGGATCTTACACCAAAA 60
||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGGCAACAACTCGGAAGTTGGTCGTAGAAGTAGTAGACGCAAAGGATCTTACACCAAAA 81
Query 61 GACGGTCATGGAACGTCAAGTCCGTACGTTGTCCTCGACTATTACGGCCAAAGAAGACGG 120
||||| |||||||||||||| ||||||||| | |||||||||||||||||||| ||||
Sbjct 82 GACGGCCATGGAACGTCAAGCCCGTACGTTATTGTCGACTATTACGGCCAAAGACGACGA 141
Query 121 ACACGAACCATAGTACGTGACTTAAACCCTGTTTGGAACGAGACACTCGAGTTCAGTCTC 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 ACACGAACCATAGTCCGTGACTTAAACCCTGTTTGGAACGAGACACTCGAGTTCAGTCTT 201
Query 181 GCAAAGCGACCATCTCATCAGCTCTTTACCGATGTTCTTGAGCTCGACATGTACCATGAC 240
|| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 202 GCGAAGCGACCTTCTCATCAGCTCTTTGCCGATGTTCTTGAGCTTGACATGTACCATGAC 261
Query 241 AAGAACTTTGGACAAACCCGGAGGAACAATTTTCTTGGTAGGATCCGACTTGGGTCCGAT 300
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 262 AAGAACTTTGGTCAAACACGGAGGAACAATTTTCTCGGTAGGATCCGACTTGGGCCCGAT 321
Query 301 CAGTTTGTTGGTCAAGGAGAAGAGGCTTTGATATATTATCCTTTGGAGAAGAAGAGTTTG 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CAGTTTGTTGGTAAAGGAGAAGAGGCTTTGATATATTATCCTTTGGAGAAGAAGAGTTTG 381
Query 361 TTTAATCTTGTACAAGGTGAGATTGGGCTTAGGGTTTACTACGCCGATGAAAAGCCTCCT 420
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 382 TTTAATCTTGTGCAAGGTGAGATTGGTCTTAGGGTTTACTACGCCGATGAAAAGCCTCCT 441
Query 421 CCTTTGAAACCGACGGTAGCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CCTTTGAAACCGACGGTAGCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACG 501
Query 481 AAGGCGGAAGGTCCAGACGAGTCTAAGCCACCACCAGAGACTAATGA-CATTCCTGCTGA 539
| ||| || ||||||||| ||||| |||||||||||||||||||||| | |||||||||
Sbjct 502 ACGGCAGACGGTCCAGACAAGTCTCAGCCACCACCAGAGACTAATGATGA-TCCTGCTGA 560
Query 540 AGTGAAAGAAACCGTGAAACCACCACAACCACCACCGGAGGAGAGTTCACCAGCCGAGGG 599
||| ||||||||| | ||||||| ||||| ||||||||||||| ||| |||||||||||
Sbjct 561 AGTTAAAGAAACCCCGGAACCACCTCAACCGCCACCGGAGGAGAATTCGCCAGCCGAGGG 620
Query 600 TCCCAAGCCAGACGAGGAAGCCTCACCACCTTTACAAGAAAACGCTACGGTTGGTGGAGA 659
|| ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 621 TCTCAAGCCAAACGAGGAAGCCTCACCACCGTTACAAGAAAATGCTACGGTTGGTGGAGA 680
Query 660 AGAACCA----C--CGG--------C-G---TCGGAATCAGATAAGAATGAAGCAGAGGC 701
||||||| | ||| | | ||||||||||||||||||||||||| |
Sbjct 681 AGAACCAGCGGCGTCGGAACCAACTCTGCCACCGGAATCAGATAAGAATGAAGCAGACGT 740
Query 702 GAAACCCGTGGAGGAGCCACCGCAGAATCAACCAGATGGTGAAGATATTGTGCTTGAGTC 761
|||||| ||||| |||||||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct 741 GAAACCGGTGGAAGAGCCACCGCAGAACCAACCAGACGGTGAAGATGTTGTACTTGAGTC 800
Query 762 AGAAGATACAATGAGTTGGGCTTCGGCGCCGCGATCACCGTTACCGGAAGTTATCATTTC 821
||||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 801 AGAAGATTCAATGAGCTGGGCTTCGGCGCCGCGAT---C---ACCGGAAGTTATCATTTC 854
Query 822 AAGATCTGTATCCGGTTCCATACCCGAAACCAAAAACGGACCACAACCACTACGGAGAAG 881
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 855 AAGATCTGTCTCCGGTTCCATACCAGAAATCAAAAACGGACCACAACCACTACGGAGAAG 914
Query 882 CGTATCGGAAACTGCAAGCTACACATCAGAGATCTCCGACGTATCAACGATCGAACGATC 941
|||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 915 CGTATCGGAAACAGCCAGCTACACATCAGAGATCTCCGACGTGTCAACGATAGAACGATC 974
Query 942 CACGTTTGATTTGGTGGAGAAGATGCATTACGTCTTCATCCGCGTCGTGAAAGCTCGGTC 1001
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 975 CACGTTTGATTTGGTGGAGAAAATGCATTACGTCTTCGTCCGCGTCGTGAAAGCTCGGTC 1034
Query 1002 TTTACCAACCTCCGGGAGTCCAGTCACAAAGATCTCACTCTCCGGCACAATGATTCAATC 1061
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1035 TTTACCAACCTCCGGAAGTCCAGTCACAAAGATCTCACTCTCCGGCACAATGATCCAATC 1094
Query 1062 AAAACCGGCTAGAAAAACCTCTTGCTTCGAGTGGGATCAAACGTTCGCCTTCCTCCGTGA 1121
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1095 AAAACCCGCCAGAAAAACCTCTTGCTTCGAGTGGGATCAAACCTTTGCCTTCCTCCGTGA 1154
Query 1122 CTCACCGGATTTATCTTCCTCTCCAATTCTGGAGATATCCGTGTGGGATTCATCGACGGG 1181
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1155 CTCACCGGATTTATCTTCTTCTCCAATTCTAGAGATCTCCGTGTGGGATTCATCGACGGA 1214
Query 1182 AATCGAAACCAGCCAATTCCTTGGTGGAATTTGCTTCGACGTGTCAGAGATTCCGCTCCG 1241
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1215 AATCGAAACTAGCCAATTCCTCGGTGGAATTTGCTTTGACGTGTCAGAGATTCCGCTCCG 1274
Query 1242 AGACCCGCCGGATAGTCCATTAGCGCCGCAATGGTACCGTCTCGAAGGTGGTGGAGCTCA 1301
||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1275 AGATCCACCGGATAGTCCATTAGCACCGCAATGGTACCGTCTCGAAGGAGGTGGAGCTCA 1334
Query 1302 CAACAGTGATCTAATGCTTGCCACGTGGACAGGAACTCAAGCAGACGAATCATTCCCCGA 1361
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1335 CAACAGTGATCTAATGCTGGCCACGTGGACAGGAACTCAAGCAGACGAATCATTTCCCGA 1394
Query 1362 CGCGTGGAAAACTGATACAGCCGGAAACGTGACCGCACGAGCGAAGGTTTACATGTCGTC 1421
||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1395 CGCTTGGAAAACAGATACCGCCGGAAACGTAACCGCTCGAGCGAAAGTTTACATGTCGTC 1454
Query 1422 GAAGCTGTGGTATCTACGCGCTACCGTGATAGAAGCACAAGACTTGTTACCGCCTCAGTT 1481
||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||||
Sbjct 1455 GAAGCTGTGGTATCTACGCGCCACCGTAATCGAAGCTCAAGACTTGTTACCGCCACAGTT 1514
Query 1482 AACGGCGTTTAAGGAAGCGTCATTTCAGTTAAAAGCTCAGTTAGGTTCCCAAGTTCAGAA 1541
|||||||||||| |||||||| ||||| |||||||||||| |||||| |||||| |||||
Sbjct 1515 AACGGCGTTTAAAGAAGCGTCGTTTCAATTAAAAGCTCAGCTAGGTTTCCAAGTGCAGAA 1574
Query 1542 AACCAAATCCGCCGTTACTCGTAACGGAGCTCCGTCATGGAACGAAGATCTACTCTTCGT 1601
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1575 AACCAAATCCGCCGTTACTCGTAATGGCGCGCCGTCATGGAACGAAGATCTACTCTTCGT 1634
Query 1602 AGCCGCCGAACCTTTCTCCGATCAGCTTGTTTTCACGTTGGAGTATCGAACATCGAAAGG 1661
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1635 AGCCGCCGAGCCTTTCTCCGATCAGCTAGTTTTCACACTGGAGTATCGAACATCGAAAGG 1694
Query 1662 ACCAGTCACCGTCGGAATGGCTCGCGTGCCACTCAGC-GCAATCGAGAGACGCGTCGACG 1720
|||||||||||||| ||||| |||||||| |||| | ||||||||||||||||||| |
Sbjct 1695 GCCAGTCACCGTCGGTATGGCGCGCGTGCCTCTCA-CTTCAATCGAGAGACGCGTCGATG 1753
Query 1721 ATCGCTTGGTTGCTTCGAGATGGTTAGGATTGGAAGATCCAAACGACGAGAAGAGAGGAA 1780
|||| ||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1754 ATCGTTTGGTGGCTTCGAGATGGTTCGGATTCGAAGATCCAAACGACGAGAAAAGAGGAA 1813
Query 1781 ACAGATCTAGAGTTCACAT-T-AGGCTTTGCTTCGACGGAGGTTATCACGTGATGGACGA 1838
|||||||||||| | |||| | || || || |||||||| ||||||||||||||||||||
Sbjct 1814 ACAGATCTAGAG-T-ACATCTGAGACTCTGTTTCGACGGTGGTTATCACGTGATGGACGA 1871
Query 1839 GGCGGCGCACGTGTGCAGTGATTACCGACCTACGGCGAGGCAGTTATGGAAACCAGCGGT 1898
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1872 GGCGGTACACGTGTGCAGCGATTACCGGCCTACGGCGAGGCAGTTATGGAAACCGGCGGT 1931
Query 1899 GGGAATCGTCGAGCTCGGTATAATCGGTTGCAAAAATCTATTACCGATGAAGACGGTTAA 1958
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1932 AGGAATCGTCGAGCTCGGTATAATCGGTTGCAAGAATCTGTTACCGATGAAGACGGTGAA 1991
Query 1959 CGGAAAAGGATCAACGGACGCGTACACGGTGGCGAAATACGGTTCTAAATGGGTCCGTAC 2018
||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1992 CGGAAAAGGTTCCACGGATGCGTACACGGTGGCGAAATACGGTACTAAATGGGTCCGTAC 2051
Query 2019 CCGAACCGTGTCGGATTCTTTAGATCCGAAATGGAACGAACAGTACACGTGGAAAGTATA 2078
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052 CCGAACCGTATCGGATTCTTTAGATCCGAAATGGAACGAACAGTACACGTGGAAAGTATA 2111
Query 2079 CGATCCGTGTACGGTTTTGACTATAGGAGTCTTCGATAGCTGGGGAGTATACGAAGTCGA 2138
||||||||||||||||||||| || ||||||||||||||||||||||||| |||| || |
Sbjct 2112 CGATCCGTGTACGGTTTTGACGATTGGAGTCTTCGATAGCTGGGGAGTATTCGAAATCAA 2171
Query 2139 CGGTGGAAAAGAAGCCACGCGTCAAGATCTAAGAATTGGAAAAGTACGTATACGTATATC 2198
| |||||||||||||||||||||| ||||| | || || ||||| ||||||||||||||
Sbjct 2172 CAGTGGAAAAGAAGCCACGCGTCAGGATCTCCGTATCGGGAAAGTTCGTATACGTATATC 2231
Query 2199 GACGCTGGAGACTGGTAAAGCGTATAGAAATACGTATCCG-TTACTGATGTTAGTTAACG 2257
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2232 TACGCTGGAGACTGGTAAAGCGTATAGAAATACGTATCCGCTT-CTGATGTTAGTTAACG 2290
Query 2258 GCGGCGTTAAAAAATTGGGAGAGATAGAATTGGCCGTTAGATTCGTGAGAACAGCTCCAC 2317
|||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2291 GCGGTGTTAAAAAACTGGGAGAGATAGAATTGGCCGTTAGATTCGTGAGATCAGCTCCAC 2350
Query 2318 CGTTGGATTTCTTACACGTGTATACTCAACCGTTATTGCCTTTGATGCATCACATTAAAC 2377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2351 CGTTGGATTTCTTACACGTGTATACTCAACCGTTATTGCCTTTGATGCATCACATTAAAC 2410
Query 2378 CGTTGAGTTTGTTTCAAGAAGATATGTTGAGGAACACTGCAGTGAAGATCTTGGCCGCAC 2437
||||||||||| |||||||||| |||||||||||| |||| |||| ||||||||| || |
Sbjct 2411 CGTTGAGTTTGATTCAAGAAGAGATGTTGAGGAACGCTGCCGTGAGGATCTTGGCTGCCC 2470
Query 2438 ATTTGTCACGATCTGAGCCGCCTTTAAGGCCGGAGATAGTACGGTATATGCTCGACGCCG 2497
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2471 ATTTGTCACGATCTGAGCCGCCTTTAAGGCCGGAGATCGTACGGTACATGCTCGACGCCG 2530
Query 2498 ATACTCATACTTTCAGTATGCGTAAAGTCAGAGCAAATTGGCTTCGGATAGTGAATGTAG 2557
|| |||| ||||||||||||||||||||| ||||||||||||| || || || || || |
Sbjct 2531 ATTCTCACACTTTCAGTATGCGTAAAGTCCGAGCAAATTGGCTCCGCATTGTTAACGTGG 2590
Query 2558 TCGCCGGAATGGTCGACGTGGTGCGGTGGGTTGATGACACCCGTTTCTGGAAGAATCCGA 2617
||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||
Sbjct 2591 TCGCCGGAATGGTCGACATAGTGCGGTGGGTGGATGACACACGTTTCTGGAAGAATCCGA 2650
Query 2618 CATCAACTTTACTAGTTCACGCACTTGTCGTGATGCTGATTTGGTTCCCGGATCTTATCG 2677
|||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || |
Sbjct 2651 CATCTACTTTACTAGTTCACGCTCTTGTCGTGATGCTGATATGGTTCCCTGATCTCATTG 2710
Query 2678 TACCGACATTAGCGTTTTACTTGTTCGTGATTGGTGCGTGGAATTATAGGTTCAGGTCAC 2737
| || |||||||||||||||||||||||||| || ||||||||||| || ||||||||||
Sbjct 2711 TTCCCACATTAGCGTTTTACTTGTTCGTGATCGGCGCGTGGAATTACAGATTCAGGTCAC 2770
Query 2738 GTGCTGCTCTACCACA-TTTCGATCCAAGACTCTCGTTAGCTGATGCAGCTGATAGAGAC 2796
|||||||||| || || ||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 2771 GTGCTGCTCTTCCTCACTTT-GATCCAAGACTCTCGTTGGCTGATGCAGCCGATAGAGAA 2829
Query 2797 GAGCTCGACGAGGAGTTTGACGTCGTACCGAGCAACCGACCACCGGAGATGGTTCGGTTG 2856
||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 2830 GAGCTTGACGAGGAGTTTGACGTCGTCCCGAGCAACCGGCCGCCGGAGATGGTTCGGTTG 2889
Query 2857 AGGTACGATAAGCTACGAAACGTCGGAGCTAGAGTTCAAACGATTCTTGGTGAAGTGGC- 2915
|||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||
Sbjct 2890 AGGTACGATAAGCTACGAAATGTCGGAGCTCGAGTTCAGACGATTCTTGGTGAAGTAGCG 2949
Query 2916 TGCGCAAGGGGAGAAGATGCAAGCTTTGGTGACGTGGCGTGACCCACGAGCGACTGGTAT 2975
| | ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2950 T-CTCAAGGAGAGAAAATGCAAGCTTTGGTGACGTGGCGAGACCCACGAGCGACGGGTAT 3008
Query 2976 ATTCGTGGGGCTGTGTTTCTTTGTGGCGTTGGTGTTGTATCTTGTGCCGACGAAGATGGT 3035
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3009 ATTCGTGGGGCTGTGTTTATTTGTGGCGTTGGTGTTGTATCTTGTGCCGACGAAGATGGT 3068
Query 3036 GGCTATGGCGTCAGGGTTTTATTACTTCCGGCATCCTATTTTCCGTGATCGGAAACCTTC 3095
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3069 GGCTATGGCGTCAGGGTTTTATTACTTCCGGCATCCTATATTCCGTGACCGGAAACCTTC 3128
Query 3096 TCCGGTGTTAAATTTCTTCCGGCGACTACCATCATTATCTGATCGGCTCATGT 3148
||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 3129 GCCGGTGTTAAACTTCTTCCGGCGACTACCTTCGTTATCTGATCGGCTCATGT 3181
> Ahg906707 jgi|Araly1|906707|Al_scaffold_0003_3835
Length=486
Score = 346 bits (187), Expect = 6e-94
Identities = 263/298 (88%), Gaps = 12/298 (4%)
Strand=Plus/Plus
Query 379 GAGATTGGGCTTAGGGTTTACTACGCCGATGAAAAGCCTCCTCCTTTGAAACCGACGGTA 438
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 151 GAGATTGGGCATAGGGTTTACTACGCCGATGAAAAGCCTTCTCCTTTGAAACCGGCGTTA 210
Query 439 GCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACGAAGGC-GGAAGGTCCAGA 497
| ||||||||||||||||||||||||||||||||||||||| | | ||| | || |||
Sbjct 211 G---CTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACGACGACAGGA-GCTCGAGA 266
Query 498 CGA---GTCTAAGCCACCACCAGAGACTAATGACA-TTCCTGCTGAAGTGAAAGAAACC- 552
||| |||| || ||||||||||||||||||||| ||| | ||||||||| |||| ||
Sbjct 267 CGAATCGTCTCAGTCACCACCAGAGACTAATGACAGTTCTT-CTGAAGTGACAGAA-CCT 324
Query 553 GTGAAACCACCACAACCACCACCGGAGGAGAGTTCACCAGCCGAGGGTCCCAAGCCAGAC 612
||| ||||||||||||| |||| |||||||||||| |||| ||| |||||||| || ||
Sbjct 325 GTGGAACCACCACAACCGCCACTGGAGGAGAGTTCTCCAGTCGAAGGTCCCAATACAAAC 384
Query 613 GAGGAAGCCTCACCACCTTTACAAGAAAACGCTACGGTTGGTGGAGAAGAACCACCGG 670
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 385 GAGGAAGCCTCACCACCGTTACAAGAAAATGCTACGGTTGGTGGAGAAGAACCACCGG 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118993925380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5