BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17990.1
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941313 jgi|Araly1|941313|scaffold_601857.1 2242 0.0
Ahg932909 jgi|Araly1|932909|scaffold_400897.1 815 0.0
Ahg932794 jgi|Araly1|932794|scaffold_400782.1 804 0.0
Ahg906128 jgi|Araly1|906128|Al_scaffold_0003_3256 684 0.0
Ahg937473 jgi|Araly1|937473|scaffold_501664.1 104 2e-21
> Ahg941313 jgi|Araly1|941313|scaffold_601857.1
Length=1377
Score = 2242 bits (1214), Expect = 0.0
Identities = 1323/1376 (96%), Gaps = 5/1376 (0%)
Strand=Plus/Plus
Query 100 TGGTTGAGCAATCGAGTGATGGTTATTGCGGTGGCGACGACGAGCTCCATTGTTTCCGGA 159
||||| || ||||||| ||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 5 TGGTTAAGTAATCGAGCGATGGTTATTGCGGTGGCGGCAACGAGCTCCATAGTTTCCGGA 64
Query 160 ATCAAGCTTTCAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGC 219
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 65 ATCAAGCTTTCAGGGATCTTAACTTCTTTCAACGCCGTAGATGATGCGTCCAGTAGTTGC 124
Query 220 GGAAGAAGCAACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCA 279
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GGAAGAACCAACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCA 184
Query 280 TCGATCGGAGCTGTT-TCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTC 338
|||||||||||| || ||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 185 TCGATCGGAGCT-TTGTCCCCAATTAGTGGGCATGCCCAATCTTCCTTTAGTCGCAGCTC 243
Query 339 TTTCGCTTGCTCTCAGAATCTCGGTTTGAGCGGTGGATTTAGTGCAGCTGAAGCTCTGCC 398
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 244 TTTCGCTTTCCCTCAGAATCTCGGTTTGAGCGGTGGTTTTAGTGCAGCTGAAGCTCTGCC 303
Query 399 ACCTGCTTGTGCAAATGCTAGCCCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAAC 458
||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 304 ACCTGCTTGTGAAAATGCCAGCCCTCCTTCCATCAAATCTTTCAACCAGTTGATTGAAAC 363
Query 459 CTTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCT 518
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 364 TTTGATTGATCGGGTTGATCTATCTGAATCCGAGGCTGAATCATCTCTTGAGTTTTTGCT 423
Query 519 GAATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTT-CTGAGAGCTAAAGGAG 577
||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 424 GAACGAGGCAAACGAGGCGCTGATTAGTGCCTTTCTAGTT-TTGCTGAGAGCTAAAGGAG 482
Query 578 AGACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGG 637
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 483 AGACATATGAAGAAATTGTGGGGTTGGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGG 542
Query 638 AAGGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCA 697
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AAGGACTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCA 602
Query 698 ATATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAGCAAG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ATATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAGCAAG 662
Query 758 GGAATCGTTCAAGTTCTTCTGCTTGTGGAAGTGCTGATGTACTAGAGGCACTAGGAGTGG 817
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGAATCGTTCGAGTTCTTCTGCTTGTGGAAGTGCTGATGTACTAGAGGCACTAGGAGTGG 722
Query 818 TTCTGGACTTGGGACCAGAGGGCATTAAAAGATGTGTTGAAGAAGGGGGGATCGGTTTTA 877
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 723 TGCTGGACTTGGGACCAGAGGGCATTAAAAGATGTGTTGAAGAAGGAGGGATCGGTTTTA 782
Query 878 TGATGTCACCAATGTATCATCCAGCTATGAAGATCGTTGGTCCTGTTCGGAAAAAGCTTA 937
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 783 TGATGTCACCAATGTATCATCCAGCTATGAAGATCGTTGGCCCTGTCCGGAAAAAGCTTA 842
Query 938 AAATTAAAACTGTTTTTAACATATTGGGACCTATGCTTAATCCTGCTAGAGTTTCTTATG 997
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 843 AAATAAAAACTGTTTTTAACATATTGGGACCTATGCTTAATCCTGCTAGAGTGTCTTATG 902
Query 998 CTGTCGTTGGTGTATACCACAAAGATCTGGTTGTTAAGATGGCAAAGGCACTGCAACGAT 1057
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 903 CTGTCGTTGGTGTATACCACAAAAATCTGGTTGTTAAGATGGCAAAGGCACTGCAACGAT 962
Query 1058 TTGGAATGAAAAGAGCACTGGTGGTTCATTCATGTGGTCTAGACGAAATGAGTCCGTTAG 1117
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 963 TTGGAATGAAAAGAGCACTGGTGGTTCATTCATATGGTCTAGACGAAATGAGTCCGTTAG 1022
Query 1118 GAGGAGGACTAGTTTATGATGTAACTCCGGAAAAGATCGAAGAATTCTCATTCGACCCAT 1177
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1023 GAGGAGGACTAGTTTATGATGTAACCCCGGAAAAGATCGAAGAATTCTCATTCGACCCAT 1082
Query 1178 TGGACTTTGGTATTCCTCGTTGTACTCTTGAGGATTTGCGAGGTGGAGGTCCAGACTACA 1237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1083 TGGACTTTGGTATTCCTCGTTGTACTCTTGAGGATTTGCGAGGTGGAGATCCAGACTACA 1142
Query 1238 ATGCGGATGTGCTAAGACGTGTGCTTTCAGGGGAAAGTGGAGCAATTGCGGATTCATTGA 1297
||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1143 ATGCGGATGTGTTAAGGCGTGTGCTTTCAGGGGAAAGTGGAGCAATTGCAGATTCACTGA 1202
Query 1298 TCCTAAACGCAGCTGCAGCTCTTCTGGTTAGCAACCGAGTTCAAACGCTAGCTGAAGGAG 1357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1203 TCCTAAACGCAGCTGCAGCTCTTCTGGTTAGCAACCGAGTTCAAACTCTAGCTGAAGGAG 1262
Query 1358 TAACCGTGGCACGTGAAGTACAATCGTCTGGGAAAGCTATCAAGACGCTTGATTCTTGGA 1417
||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1263 TAACCTTGGCACGTGAAGTACAATCGTCAGGGAAAGCTATCAAGACCCTTGATTCATGGA 1322
Query 1418 TAAACATCTCAAACTTAGCTCAGAAATCTCAGTGACCAGAAGAGGCTTATGATATT 1473
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1323 TAAACATCTCGAACTTAGCTCAGAAATCTCAGTGACCAGA-GAGGCTTATGATATT 1377
> Ahg932909 jgi|Araly1|932909|scaffold_400897.1
Length=962
Score = 815 bits (441), Expect = 0.0
Identities = 545/594 (92%), Gaps = 11/594 (2%)
Strand=Plus/Plus
Query 170 CAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGCGGAAGAAGCA 229
||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||| || ||
Sbjct 206 CAGGGATCTTAACTTCGGTCAACGCCGCAGATGATGGGTCCAGTAGTTTCGGAAAAACCA 265
Query 230 ACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 289
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 266 ACCTGACCGGAGTTAGAATTTATCCGACATTGAGTCGGCGACGATTCTCATCGATCCGAG 325
Query 290 CTGTTTCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTCTTTCGCTTGCT 349
||| ||||||||||| || ||||| |||||||||||||||||||| ||||||| |||||
Sbjct 326 TTGTGTCCCCAATTCGCGGAGATGCCCAATCTTCCTTTAGTCGCAGTTCTTTCGTTTGCT 385
Query 350 CTCAGAATCTCGGTTTGAGCGGTGG----A----TTT-AGTGCAGCTGAAGCTCTGCCAC 400
|||||||||| |||||||||||||| | ||| |||||| ||||||||||||||
Sbjct 386 CTCAGAATCTTGGTTTGAGCGGTGGAATCAGTGGTTTCAGTGCACCTGAAGCTCTGCCAA 445
Query 401 CTGCTTGTGCAAATGCTAGC-CCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAACC 459
|| ||||| |||||| | | ||||||||||| ||||||||||||||||||||||| ||
Sbjct 446 ATGTTTGTGAAAATGCCA-CTCCTTCTTCCATCAAATCTTTCAACCAGTTGATTGAGACT 504
Query 460 TTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCTG 519
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 505 TTGATTGATCGGGTTGATCTATCTGAAGCTGAGGCTGAATCATCTCTCGAGTTTTTGCTG 564
Query 520 AATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGAGCTAAAGGAGAG 579
|| |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||
Sbjct 565 AACGAGGCAAACGAGGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGAGCTAAAGGAGAG 624
Query 580 ACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 639
||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 625 ACATACGAAGAAATTGTGGGGTTGGCTAGGGAAATGATGAAGCATGCCAGGAAAGTGGAA 684
Query 640 GGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 699
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GGATTAGTCGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 744
Query 700 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 798
> Ahg932794 jgi|Araly1|932794|scaffold_400782.1
Length=829
Score = 804 bits (435), Expect = 0.0
Identities = 543/594 (91%), Gaps = 11/594 (2%)
Strand=Plus/Plus
Query 170 CAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGCGGAAGAAGCA 229
||||||||||||||| | ||||||||| |||||||| ||||||||||| | ||| || ||
Sbjct 73 CAGGGATCTTAACTTTGGTCAACGCCGCAGATGATGGGTCCAGTAGTTTCAGAAAAACCA 132
Query 230 ACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 289
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 133 ACCTGACCGGAGTTAGAATTTATCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 192
Query 290 CTGTTTCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTCTTTCGCTTGCT 349
||| ||||||||||| || ||||| |||||||||||||||||||| ||||||| |||||
Sbjct 193 TTGTGTCCCCAATTCGAGGAGATGCCCAATCTTCCTTTAGTCGCAGTTCTTTCGTTTGCT 252
Query 350 CTCAGAATCTCGGTTTGAGCGGTGG----A----TTT-AGTGCAGCTGAAGCTCTGCCAC 400
|||||||||| |||||||||||||| | ||| |||||| ||||||||||||||
Sbjct 253 CTCAGAATCTTGGTTTGAGCGGTGGAATCAGTGGTTTCAGTGCACCTGAAGCTCTGCCAA 312
Query 401 CTGCTTGTGCAAATGCTAGC-CCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAACC 459
|| ||||| |||||| | | | ||||||||| ||||||||||||||||||||||| ||
Sbjct 313 ATGTTTGTGAAAATGCCA-CTCTTTCTTCCATCAAATCTTTCAACCAGTTGATTGAGACT 371
Query 460 TTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCTG 519
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 372 TTGATTGATCGGGTTGATCTATCTGAAGCTGAGGCTGAATCATCTCTCGAGTTTTTGCTG 431
Query 520 AATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGAGCTAAAGGAGAG 579
|| |||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||
Sbjct 432 AACGAGGCAAACGAGGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGAGCTAAAGGAGAG 491
Query 580 ACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 639
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 492 ACATACGAAGAAATTGTGGGGTTGGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 551
Query 640 GGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 699
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 552 GGATTAGTCGATGCTGTGGACATAGTTGGAATAGGTGGTGATGGAGCAAACACAGTCAAT 611
Query 700 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 665
> Ahg906128 jgi|Araly1|906128|Al_scaffold_0003_3256
Length=546
Score = 684 bits (370), Expect = 0.0
Identities = 496/553 (90%), Gaps = 23/553 (4%)
Strand=Plus/Plus
Query 202 GATGCGTCCAGTAGTTGCGGAAGAAGCAACTTGACCGGAGTTAGAATTTTTCCGACATTG 261
|||| ||||||||||| ||||| || |||| |||||||||||||||||| ||||||||||
Sbjct 7 GATGGGTCCAGTAGTTTCGGAAAAACCAACCTGACCGGAGTTAGAATTTATCCGACATTG 66
Query 262 AGTCGGCGACGATTCTCATCGATCGGAGCTGTTTCCCCAATTCGTGGGGATGCTCAATCT 321
|||||||||||||||||||||||||||| ||| ||||||||||| || ||||| ||||||
Sbjct 67 AGTCGGCGACGATTCTCATCGATCGGAGTTGTGTCCCCAATTCGCGGAGATGCCCAATCT 126
Query 322 TCCTTTAGTCGCAGCTCTTTCGCTTGCTCTCAGAATCTCGGTTTGAGCGGTGG----A-- 375
||||||||| | ||||||||| ||||||||||||||| |||||||||||||| |
Sbjct 127 TCCTTTAGT--C-GCTCTTTCGTTTGCTCTCAGAATCTTGGTTTGAGCGGTGGAATCAGT 183
Query 376 --TTT-AGTGCAGCTGAAGCTCTGCCACCTGCTTGTGCAAATGCTAGC-CCTTCTTCCAT 431
||| |||||| |||||||||||||| || ||||| |||||| | | |||||||||||
Sbjct 184 GGTTTCAGTGCACCTGAAGCTCTGCCAAATGTTTGTGAAAATGCCA-CTCCTTCTTCCAT 242
Query 432 TAAATCTTTCAACCAGTTGATTGAAACCTTGATTGATCGGGTTGATCTATCTGAAACTGA 491
||||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||
Sbjct 243 CAAATCTTTCAACCAGTTGATTGAGACTTTGATTGATCGTGTTGATCTATCTGAAGCTGA 302
Query 492 GGCTGAATCATCTCTTGAGTTTTTGCTGAATGAGGCAAACGAGGCGCTGATCAGTGCCTT 551
||||||||||||||| |||||||||| | | |||||||| || || ||||||||
Sbjct 303 GGCTGAATCATCTCTCGAGTTTTTGC----T---G--AACGAGGCACTAATTAGTGCCTT 353
Query 552 TCTAGTTCTTCTGAGAGCTAAAGGAGAGACATACGAAGAGATTGTGGGGTTAGCTAGGGC 611
||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 354 TCTGGTTCTCCTGAGAGCTAAAGGAGAGACATACGAAGAAATTGTGGGGTTGGCTAGGGC 413
Query 612 AATGATGAAGCATGCCAGGAAAGTGGAAGGATTAGTTGATGCTGTGGACATAGTTGGAAC 671
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 414 AATGATGAAGCATGCCAGGAAAGTGGAAGGATTAGTCGATGCTATGGACATAGTTGGAAC 473
Query 672 AGGTGGTGATGGAGCAAACACAGTCAATATATCAACTGGATCTTCAATACTTGCTGCAGC 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGGTGGTGATGGAGCAAACACAGTCAATATATCAACTGGATCTTCAATACTTGCTGCAGC 533
Query 732 TTGTGGTGCAAAA 744
|||||||||||||
Sbjct 534 TTGTGGTGCAAAA 546
> Ahg937473 jgi|Araly1|937473|scaffold_501664.1
Length=449
Score = 104 bits (56), Expect = 2e-21
Identities = 77/87 (89%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 509 AGTTTTTGCT-GAATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGA 567
|||||||| | ||| ||||||||||| || || || ||||||||||| ||||| ||||||
Sbjct 143 AGTTTTTG-TCGAACGAGGCAAACGATGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGA 201
Query 568 GCTAAAGGAGAGACATACGAAGAGATT 594
||||||||||||||||||||||| |||
Sbjct 202 GCTAAAGGAGAGACATACGAAGAAATT 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62848904250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5