BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17990.1 Length=1676 Score E Sequences producing significant alignments: (Bits) Value Ahg941313 jgi|Araly1|941313|scaffold_601857.1 2242 0.0 Ahg932909 jgi|Araly1|932909|scaffold_400897.1 815 0.0 Ahg932794 jgi|Araly1|932794|scaffold_400782.1 804 0.0 Ahg906128 jgi|Araly1|906128|Al_scaffold_0003_3256 684 0.0 Ahg937473 jgi|Araly1|937473|scaffold_501664.1 104 2e-21 > Ahg941313 jgi|Araly1|941313|scaffold_601857.1 Length=1377 Score = 2242 bits (1214), Expect = 0.0 Identities = 1323/1376 (96%), Gaps = 5/1376 (0%) Strand=Plus/Plus Query 100 TGGTTGAGCAATCGAGTGATGGTTATTGCGGTGGCGACGACGAGCTCCATTGTTTCCGGA 159 ||||| || ||||||| ||||||||||||||||||| | ||||||||||| ||||||||| Sbjct 5 TGGTTAAGTAATCGAGCGATGGTTATTGCGGTGGCGGCAACGAGCTCCATAGTTTCCGGA 64 Query 160 ATCAAGCTTTCAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGC 219 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 65 ATCAAGCTTTCAGGGATCTTAACTTCTTTCAACGCCGTAGATGATGCGTCCAGTAGTTGC 124 Query 220 GGAAGAAGCAACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCA 279 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 GGAAGAACCAACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCA 184 Query 280 TCGATCGGAGCTGTT-TCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTC 338 |||||||||||| || ||||||||| ||||| |||| ||||||||||||||||||||||| Sbjct 185 TCGATCGGAGCT-TTGTCCCCAATTAGTGGGCATGCCCAATCTTCCTTTAGTCGCAGCTC 243 Query 339 TTTCGCTTGCTCTCAGAATCTCGGTTTGAGCGGTGGATTTAGTGCAGCTGAAGCTCTGCC 398 |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 244 TTTCGCTTTCCCTCAGAATCTCGGTTTGAGCGGTGGTTTTAGTGCAGCTGAAGCTCTGCC 303 Query 399 ACCTGCTTGTGCAAATGCTAGCCCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAAC 458 ||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct 304 ACCTGCTTGTGAAAATGCCAGCCCTCCTTCCATCAAATCTTTCAACCAGTTGATTGAAAC 363 Query 459 CTTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCT 518 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 364 TTTGATTGATCGGGTTGATCTATCTGAATCCGAGGCTGAATCATCTCTTGAGTTTTTGCT 423 Query 519 GAATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTT-CTGAGAGCTAAAGGAG 577 ||| |||||||||||||||||||| ||||||||||||||| || |||||||||||||||| Sbjct 424 GAACGAGGCAAACGAGGCGCTGATTAGTGCCTTTCTAGTT-TTGCTGAGAGCTAAAGGAG 482 Query 578 AGACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGG 637 ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 483 AGACATATGAAGAAATTGTGGGGTTGGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGG 542 Query 638 AAGGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCA 697 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 AAGGACTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCA 602 Query 698 ATATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAGCAAG 757 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 ATATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAGCAAG 662 Query 758 GGAATCGTTCAAGTTCTTCTGCTTGTGGAAGTGCTGATGTACTAGAGGCACTAGGAGTGG 817 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 GGAATCGTTCGAGTTCTTCTGCTTGTGGAAGTGCTGATGTACTAGAGGCACTAGGAGTGG 722 Query 818 TTCTGGACTTGGGACCAGAGGGCATTAAAAGATGTGTTGAAGAAGGGGGGATCGGTTTTA 877 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 723 TGCTGGACTTGGGACCAGAGGGCATTAAAAGATGTGTTGAAGAAGGAGGGATCGGTTTTA 782 Query 878 TGATGTCACCAATGTATCATCCAGCTATGAAGATCGTTGGTCCTGTTCGGAAAAAGCTTA 937 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 783 TGATGTCACCAATGTATCATCCAGCTATGAAGATCGTTGGCCCTGTCCGGAAAAAGCTTA 842 Query 938 AAATTAAAACTGTTTTTAACATATTGGGACCTATGCTTAATCCTGCTAGAGTTTCTTATG 997 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 843 AAATAAAAACTGTTTTTAACATATTGGGACCTATGCTTAATCCTGCTAGAGTGTCTTATG 902 Query 998 CTGTCGTTGGTGTATACCACAAAGATCTGGTTGTTAAGATGGCAAAGGCACTGCAACGAT 1057 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 903 CTGTCGTTGGTGTATACCACAAAAATCTGGTTGTTAAGATGGCAAAGGCACTGCAACGAT 962 Query 1058 TTGGAATGAAAAGAGCACTGGTGGTTCATTCATGTGGTCTAGACGAAATGAGTCCGTTAG 1117 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 963 TTGGAATGAAAAGAGCACTGGTGGTTCATTCATATGGTCTAGACGAAATGAGTCCGTTAG 1022 Query 1118 GAGGAGGACTAGTTTATGATGTAACTCCGGAAAAGATCGAAGAATTCTCATTCGACCCAT 1177 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1023 GAGGAGGACTAGTTTATGATGTAACCCCGGAAAAGATCGAAGAATTCTCATTCGACCCAT 1082 Query 1178 TGGACTTTGGTATTCCTCGTTGTACTCTTGAGGATTTGCGAGGTGGAGGTCCAGACTACA 1237 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1083 TGGACTTTGGTATTCCTCGTTGTACTCTTGAGGATTTGCGAGGTGGAGATCCAGACTACA 1142 Query 1238 ATGCGGATGTGCTAAGACGTGTGCTTTCAGGGGAAAGTGGAGCAATTGCGGATTCATTGA 1297 ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1143 ATGCGGATGTGTTAAGGCGTGTGCTTTCAGGGGAAAGTGGAGCAATTGCAGATTCACTGA 1202 Query 1298 TCCTAAACGCAGCTGCAGCTCTTCTGGTTAGCAACCGAGTTCAAACGCTAGCTGAAGGAG 1357 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1203 TCCTAAACGCAGCTGCAGCTCTTCTGGTTAGCAACCGAGTTCAAACTCTAGCTGAAGGAG 1262 Query 1358 TAACCGTGGCACGTGAAGTACAATCGTCTGGGAAAGCTATCAAGACGCTTGATTCTTGGA 1417 ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 1263 TAACCTTGGCACGTGAAGTACAATCGTCAGGGAAAGCTATCAAGACCCTTGATTCATGGA 1322 Query 1418 TAAACATCTCAAACTTAGCTCAGAAATCTCAGTGACCAGAAGAGGCTTATGATATT 1473 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1323 TAAACATCTCGAACTTAGCTCAGAAATCTCAGTGACCAGA-GAGGCTTATGATATT 1377 > Ahg932909 jgi|Araly1|932909|scaffold_400897.1 Length=962 Score = 815 bits (441), Expect = 0.0 Identities = 545/594 (92%), Gaps = 11/594 (2%) Strand=Plus/Plus Query 170 CAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGCGGAAGAAGCA 229 ||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||| || || Sbjct 206 CAGGGATCTTAACTTCGGTCAACGCCGCAGATGATGGGTCCAGTAGTTTCGGAAAAACCA 265 Query 230 ACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 289 || |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 266 ACCTGACCGGAGTTAGAATTTATCCGACATTGAGTCGGCGACGATTCTCATCGATCCGAG 325 Query 290 CTGTTTCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTCTTTCGCTTGCT 349 ||| ||||||||||| || ||||| |||||||||||||||||||| ||||||| ||||| Sbjct 326 TTGTGTCCCCAATTCGCGGAGATGCCCAATCTTCCTTTAGTCGCAGTTCTTTCGTTTGCT 385 Query 350 CTCAGAATCTCGGTTTGAGCGGTGG----A----TTT-AGTGCAGCTGAAGCTCTGCCAC 400 |||||||||| |||||||||||||| | ||| |||||| |||||||||||||| Sbjct 386 CTCAGAATCTTGGTTTGAGCGGTGGAATCAGTGGTTTCAGTGCACCTGAAGCTCTGCCAA 445 Query 401 CTGCTTGTGCAAATGCTAGC-CCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAACC 459 || ||||| |||||| | | ||||||||||| ||||||||||||||||||||||| || Sbjct 446 ATGTTTGTGAAAATGCCA-CTCCTTCTTCCATCAAATCTTTCAACCAGTTGATTGAGACT 504 Query 460 TTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCTG 519 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 505 TTGATTGATCGGGTTGATCTATCTGAAGCTGAGGCTGAATCATCTCTCGAGTTTTTGCTG 564 Query 520 AATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGAGCTAAAGGAGAG 579 || |||||||||||||| || || ||||||||||| ||||| |||||||||||||||||| Sbjct 565 AACGAGGCAAACGAGGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGAGCTAAAGGAGAG 624 Query 580 ACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 639 ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 625 ACATACGAAGAAATTGTGGGGTTGGCTAGGGAAATGATGAAGCATGCCAGGAAAGTGGAA 684 Query 640 GGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 699 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 GGATTAGTCGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 744 Query 700 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 798 > Ahg932794 jgi|Araly1|932794|scaffold_400782.1 Length=829 Score = 804 bits (435), Expect = 0.0 Identities = 543/594 (91%), Gaps = 11/594 (2%) Strand=Plus/Plus Query 170 CAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGCGGAAGAAGCA 229 ||||||||||||||| | ||||||||| |||||||| ||||||||||| | ||| || || Sbjct 73 CAGGGATCTTAACTTTGGTCAACGCCGCAGATGATGGGTCCAGTAGTTTCAGAAAAACCA 132 Query 230 ACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 289 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 133 ACCTGACCGGAGTTAGAATTTATCCGACATTGAGTCGGCGACGATTCTCATCGATCGGAG 192 Query 290 CTGTTTCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTCTTTCGCTTGCT 349 ||| ||||||||||| || ||||| |||||||||||||||||||| ||||||| ||||| Sbjct 193 TTGTGTCCCCAATTCGAGGAGATGCCCAATCTTCCTTTAGTCGCAGTTCTTTCGTTTGCT 252 Query 350 CTCAGAATCTCGGTTTGAGCGGTGG----A----TTT-AGTGCAGCTGAAGCTCTGCCAC 400 |||||||||| |||||||||||||| | ||| |||||| |||||||||||||| Sbjct 253 CTCAGAATCTTGGTTTGAGCGGTGGAATCAGTGGTTTCAGTGCACCTGAAGCTCTGCCAA 312 Query 401 CTGCTTGTGCAAATGCTAGC-CCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAACC 459 || ||||| |||||| | | | ||||||||| ||||||||||||||||||||||| || Sbjct 313 ATGTTTGTGAAAATGCCA-CTCTTTCTTCCATCAAATCTTTCAACCAGTTGATTGAGACT 371 Query 460 TTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCTG 519 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 372 TTGATTGATCGGGTTGATCTATCTGAAGCTGAGGCTGAATCATCTCTCGAGTTTTTGCTG 431 Query 520 AATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGAGCTAAAGGAGAG 579 || |||||||||||||| || || ||||||||||| ||||| |||||||||||||||||| Sbjct 432 AACGAGGCAAACGAGGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGAGCTAAAGGAGAG 491 Query 580 ACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 639 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 492 ACATACGAAGAAATTGTGGGGTTGGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGGAA 551 Query 640 GGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCAAT 699 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 552 GGATTAGTCGATGCTGTGGACATAGTTGGAATAGGTGGTGATGGAGCAAACACAGTCAAT 611 Query 700 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 ATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAG 665 > Ahg906128 jgi|Araly1|906128|Al_scaffold_0003_3256 Length=546 Score = 684 bits (370), Expect = 0.0 Identities = 496/553 (90%), Gaps = 23/553 (4%) Strand=Plus/Plus Query 202 GATGCGTCCAGTAGTTGCGGAAGAAGCAACTTGACCGGAGTTAGAATTTTTCCGACATTG 261 |||| ||||||||||| ||||| || |||| |||||||||||||||||| |||||||||| Sbjct 7 GATGGGTCCAGTAGTTTCGGAAAAACCAACCTGACCGGAGTTAGAATTTATCCGACATTG 66 Query 262 AGTCGGCGACGATTCTCATCGATCGGAGCTGTTTCCCCAATTCGTGGGGATGCTCAATCT 321 |||||||||||||||||||||||||||| ||| ||||||||||| || ||||| |||||| Sbjct 67 AGTCGGCGACGATTCTCATCGATCGGAGTTGTGTCCCCAATTCGCGGAGATGCCCAATCT 126 Query 322 TCCTTTAGTCGCAGCTCTTTCGCTTGCTCTCAGAATCTCGGTTTGAGCGGTGG----A-- 375 ||||||||| | ||||||||| ||||||||||||||| |||||||||||||| | Sbjct 127 TCCTTTAGT--C-GCTCTTTCGTTTGCTCTCAGAATCTTGGTTTGAGCGGTGGAATCAGT 183 Query 376 --TTT-AGTGCAGCTGAAGCTCTGCCACCTGCTTGTGCAAATGCTAGC-CCTTCTTCCAT 431 ||| |||||| |||||||||||||| || ||||| |||||| | | ||||||||||| Sbjct 184 GGTTTCAGTGCACCTGAAGCTCTGCCAAATGTTTGTGAAAATGCCA-CTCCTTCTTCCAT 242 Query 432 TAAATCTTTCAACCAGTTGATTGAAACCTTGATTGATCGGGTTGATCTATCTGAAACTGA 491 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |||| Sbjct 243 CAAATCTTTCAACCAGTTGATTGAGACTTTGATTGATCGTGTTGATCTATCTGAAGCTGA 302 Query 492 GGCTGAATCATCTCTTGAGTTTTTGCTGAATGAGGCAAACGAGGCGCTGATCAGTGCCTT 551 ||||||||||||||| |||||||||| | | |||||||| || || |||||||| Sbjct 303 GGCTGAATCATCTCTCGAGTTTTTGC----T---G--AACGAGGCACTAATTAGTGCCTT 353 Query 552 TCTAGTTCTTCTGAGAGCTAAAGGAGAGACATACGAAGAGATTGTGGGGTTAGCTAGGGC 611 ||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 354 TCTGGTTCTCCTGAGAGCTAAAGGAGAGACATACGAAGAAATTGTGGGGTTGGCTAGGGC 413 Query 612 AATGATGAAGCATGCCAGGAAAGTGGAAGGATTAGTTGATGCTGTGGACATAGTTGGAAC 671 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 414 AATGATGAAGCATGCCAGGAAAGTGGAAGGATTAGTCGATGCTATGGACATAGTTGGAAC 473 Query 672 AGGTGGTGATGGAGCAAACACAGTCAATATATCAACTGGATCTTCAATACTTGCTGCAGC 731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 AGGTGGTGATGGAGCAAACACAGTCAATATATCAACTGGATCTTCAATACTTGCTGCAGC 533 Query 732 TTGTGGTGCAAAA 744 ||||||||||||| Sbjct 534 TTGTGGTGCAAAA 546 > Ahg937473 jgi|Araly1|937473|scaffold_501664.1 Length=449 Score = 104 bits (56), Expect = 2e-21 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 509 AGTTTTTGCT-GAATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGA 567 |||||||| | ||| ||||||||||| || || || ||||||||||| ||||| |||||| Sbjct 143 AGTTTTTG-TCGAACGAGGCAAACGATGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGA 201 Query 568 GCTAAAGGAGAGACATACGAAGAGATT 594 ||||||||||||||||||||||| ||| Sbjct 202 GCTAAAGGAGAGACATACGAAGAAATT 228 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62848904250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5