BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18000.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350906 jgi|Araly1|350906|fgenesh1_pg.C_scaffold_6001499 1375 0.0
> Ahg350906 jgi|Araly1|350906|fgenesh1_pg.C_scaffold_6001499
Length=927
Score = 1375 bits (744), Expect = 0.0
Identities = 856/910 (94%), Gaps = 8/910 (1%)
Strand=Plus/Plus
Query 191 tttGGTCAGATTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAA 250
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 TTTGGTCAGGTTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAA 78
Query 251 GATCATTCGACTGAAATGATGAGAATGATTCCTCATCACTTGATAAGAAGCATCTCCGAC 310
||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 79 GATTTTTCGTCTGAAATGATGAGAATGATTCCGCATCACTTGATAAGAAGCATCTCCGAC 138
Query 311 AAGTCTTCATCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGGTCATGGCAAGTTAAA 370
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 139 AAGTCTTCGTCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGCTCATGGCAAGTTAAA 198
Query 371 ATCTCCAAGAACCCAAATTTTCACTACATGGAAGATCGTGGATGGAACCAGTTTGTGAAT 430
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 199 ATCTCCAAGAACCCAATTTTTCACTACATGGAAGATCGTGGTTGGAACCAGTTTGTGAAT 258
Query 431 GACAACGGTTTGGGTGAAAACGAGTATCTTACTTTCACTCATGAGGCAAATATGTGCTTT 490
|||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 259 GACAACGGCTTGGGTTTAAACGAGTTTCTTACTTTCACTCATGAGGCAAATATGTGCTTT 318
Query 491 AATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGA-AA-----AACC 544
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 319 AATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGACAACCTTCAACC 378
Query 545 ATTACTTCTAGTTCCGGTCGGAACaagagagaagagaggaagagcatctacaaagatgtg 604
||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 379 ATTGCTTCTAGTTCCGGTCGGAACAAGAGAGAAGAGAAGAAGAGCATCTACATAGATGTG 438
Query 605 aagaaggaagaagagatagagTCTTGGTCTGAATCGAGCCATCCTTGTCACAAAACAGCT 664
||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||
Sbjct 439 AAGAAGGAAGAAGAGATAGAGTCTTGGTCTGAATCGAGCTATGCTGGTCATAAAACAGCT 498
Query 665 GAATCTACAAGTGGGAGATTGACGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCC 724
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 499 GAATCTACAAGTGGGAGATTGAAGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCC 558
Query 725 GATAAAACCGAAAAATCCAAGACGAGTAAGAAGAAGAAGGTGGAAACTGTTAGTAACGAC 784
|||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||||
Sbjct 559 GATAAAACCGAAAAATCCAAGAAGAGGAAGAAGAAGAAGGTGGATACTGTTTGTAACGAT 618
Query 785 TCTGAAGCCGGTACTTCATCTCTTATTCCAGAATTCAAGCTCACCATAAAGAAATCACAC 844
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 619 TCTGAAGCCGGCACTTCATCTCTTGTTCCAGAATTCAAGCTCACCATAAAGAAATCACAC 678
Query 845 CTTCT-GTTCTTGGGGATCCCAAAGAAATTTGTGGATATGCATATGCCAACTGAGACAAC 903
|| || ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||
Sbjct 679 CT-CTTGTTCTTGGGGATCCCGAAGAAGTTTGTGGATATGCATATGCCAAGTGAGACAAA 737
Query 904 GATGTTCAAGATTCATTATCCGAGAGGAAAGAAGTCATGGGATGTTACATATGTGGTCAC 963
|||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 738 GATGTTCAAGATTCATCATCCGAGAGGAAAGAAGTCATGGGAGGTTTGGTATGTGGTCAA 797
Query 964 TGATGTACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAGGAGTTAGGTTTACT 1023
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 798 TGATGTACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAAGAGTTAGGTTTAGT 857
Query 1024 GGTCGGAGATGTTTGTACGTTCAAGCTCATCAAACCGACAGAGATGCGTGTGAAAGTCTC 1083
||||||||||||||| ||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct 858 GGTCGGAGATGTTTGCACGTTTGAGCTCATCAAACCGACCGAGATGTGTGTCAAAGTCTC 917
Query 1084 CAAAGAATAG 1093
||||||||||
Sbjct 918 CAAAGAATAG 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5