BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18000.1 Length=1264 Score E Sequences producing significant alignments: (Bits) Value Ahg350906 jgi|Araly1|350906|fgenesh1_pg.C_scaffold_6001499 1375 0.0 > Ahg350906 jgi|Araly1|350906|fgenesh1_pg.C_scaffold_6001499 Length=927 Score = 1375 bits (744), Expect = 0.0 Identities = 856/910 (94%), Gaps = 8/910 (1%) Strand=Plus/Plus Query 191 tttGGTCAGATTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAA 250 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19 TTTGGTCAGGTTATGGAAGAAAGAGATAATCCAGCATTCTTCAAGATTCTTCGAAGGGAA 78 Query 251 GATCATTCGACTGAAATGATGAGAATGATTCCTCATCACTTGATAAGAAGCATCTCCGAC 310 ||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 79 GATTTTTCGTCTGAAATGATGAGAATGATTCCGCATCACTTGATAAGAAGCATCTCCGAC 138 Query 311 AAGTCTTCATCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGGTCATGGCAAGTTAAA 370 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 139 AAGTCTTCGTCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGCTCATGGCAAGTTAAA 198 Query 371 ATCTCCAAGAACCCAAATTTTCACTACATGGAAGATCGTGGATGGAACCAGTTTGTGAAT 430 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 199 ATCTCCAAGAACCCAATTTTTCACTACATGGAAGATCGTGGTTGGAACCAGTTTGTGAAT 258 Query 431 GACAACGGTTTGGGTGAAAACGAGTATCTTACTTTCACTCATGAGGCAAATATGTGCTTT 490 |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 259 GACAACGGCTTGGGTTTAAACGAGTTTCTTACTTTCACTCATGAGGCAAATATGTGCTTT 318 Query 491 AATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGA-AA-----AACC 544 |||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 319 AATGTAACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAGACAACCTTCAACC 378 Query 545 ATTACTTCTAGTTCCGGTCGGAACaagagagaagagaggaagagcatctacaaagatgtg 604 ||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 379 ATTGCTTCTAGTTCCGGTCGGAACAAGAGAGAAGAGAAGAAGAGCATCTACATAGATGTG 438 Query 605 aagaaggaagaagagatagagTCTTGGTCTGAATCGAGCCATCCTTGTCACAAAACAGCT 664 ||||||||||||||||||||||||||||||||||||||| || || |||| ||||||||| Sbjct 439 AAGAAGGAAGAAGAGATAGAGTCTTGGTCTGAATCGAGCTATGCTGGTCATAAAACAGCT 498 Query 665 GAATCTACAAGTGGGAGATTGACGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCC 724 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 499 GAATCTACAAGTGGGAGATTGAAGCAGAAACAGGAGCTTAACTTGAGAAAGAAGGAAGCC 558 Query 725 GATAAAACCGAAAAATCCAAGACGAGTAAGAAGAAGAAGGTGGAAACTGTTAGTAACGAC 784 |||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||| Sbjct 559 GATAAAACCGAAAAATCCAAGAAGAGGAAGAAGAAGAAGGTGGATACTGTTTGTAACGAT 618 Query 785 TCTGAAGCCGGTACTTCATCTCTTATTCCAGAATTCAAGCTCACCATAAAGAAATCACAC 844 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 619 TCTGAAGCCGGCACTTCATCTCTTGTTCCAGAATTCAAGCTCACCATAAAGAAATCACAC 678 Query 845 CTTCT-GTTCTTGGGGATCCCAAAGAAATTTGTGGATATGCATATGCCAACTGAGACAAC 903 || || ||||||||||||||| ||||| |||||||||||||||||||||| |||||||| Sbjct 679 CT-CTTGTTCTTGGGGATCCCGAAGAAGTTTGTGGATATGCATATGCCAAGTGAGACAAA 737 Query 904 GATGTTCAAGATTCATTATCCGAGAGGAAAGAAGTCATGGGATGTTACATATGTGGTCAC 963 |||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| Sbjct 738 GATGTTCAAGATTCATCATCCGAGAGGAAAGAAGTCATGGGAGGTTTGGTATGTGGTCAA 797 Query 964 TGATGTACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAGGAGTTAGGTTTACT 1023 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 798 TGATGTACAATCAAGATTCTCTGGTGGATGGAGTCGTTTGGCCAAAGAGTTAGGTTTAGT 857 Query 1024 GGTCGGAGATGTTTGTACGTTCAAGCTCATCAAACCGACAGAGATGCGTGTGAAAGTCTC 1083 ||||||||||||||| ||||| |||||||||||||||| |||||| |||| |||||||| Sbjct 858 GGTCGGAGATGTTTGCACGTTTGAGCTCATCAAACCGACCGAGATGTGTGTCAAAGTCTC 917 Query 1084 CAAAGAATAG 1093 |||||||||| Sbjct 918 CAAAGAATAG 927 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47234294163 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5