BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18020.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941329 jgi|Araly1|941329|scaffold_601873.1 433 7e-121
Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1 425 1e-118
Ahg941320 jgi|Araly1|941320|scaffold_601864.1 418 2e-116
> Ahg941329 jgi|Araly1|941329|scaffold_601873.1
Length=313
Score = 433 bits (234), Expect = 7e-121
Identities = 273/292 (93%), Gaps = 1/292 (0%)
Strand=Plus/Plus
Query 98 ATGGCTTTTGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCACAGCA 157
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 21 ATGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 80
Query 158 GCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGTGAGAGCCAAAAGAAGAGA 217
|||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 81 CCCTCTGCAGCACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAAAAGAAGAGA 140
Query 218 TATCTGGTGCCAATCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 277
||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 141 TATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 200
Query 278 GAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCCTGTCCTGAAGAT 337
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 201 GAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 260
Query 338 ACATTCATCAATGTGACTTCTCGGTTCCAACGATGAT-GAGCCAACATTTTT 388
|||||||||||||||||||||||| ||||| |||||| || |||||||||||
Sbjct 261 ACATTCATCAATGTGACTTCTCGGCTCCAATGATGATTGATCCAACATTTTT 312
> Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1
Length=420
Score = 425 bits (230), Expect = 1e-118
Identities = 272/293 (93%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 94 AGATATGGCTTTTGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCAC 153
||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1 AGAAATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGC 60
Query 154 AGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGTGAGAGCCAAAAGAA 213
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 61 AGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAA 120
Query 214 GAGATATCTGGTGCCAATCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAA 273
||||||| ||||||| ||||||| || | ||| ||||||||||||||||||||||||||
Sbjct 121 GAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAA 180
Query 274 ATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCCTGTCCTGA 333
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 ATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGA 240
Query 334 AGATACATTCATCAATGTGACTTCTCGGTTCCAACGATGATGAGCCAACATTT 386
|||||| ||||||| ||||||||||||| ||||| |||||| | |||||||||
Sbjct 241 AGATACCTTCATCACTGTGACTTCTCGGCTCCAATGATGATTATCCAACATTT 293
> Ahg941320 jgi|Araly1|941320|scaffold_601864.1
Length=314
Score = 418 bits (226), Expect = 2e-116
Identities = 288/317 (91%), Gaps = 7/317 (2%)
Strand=Plus/Plus
Query 77 TTCGAAA-CAAAAACAATAGATATGGCTTTTGTGAGAAGTCTATTGGGAGCAAAGAAGAT 135
||| ||| |||||| || | | |||||||||||||||||||| |||||||||||||||||
Sbjct 3 TTC-AAACCAAAAATAA-A-AGATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGAT 59
Query 136 TCTAAGCCGCTCCACCACAGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGT 195
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 TCTAAGCCGCTCCACCGCAGCAGCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGT 119
Query 196 AGGTGAGAGCCAAAAGAAGAGATATCTGGTGCCAATCTCATATTTAAACCAGCCTTCATT 255
||| ||||||| |||||||||||| ||||||||||||||||||||||||| || || ||
Sbjct 120 AGGAGAGAGCCTGAAGAAGAGATATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTT 179
Query 256 TCAAGCTCTTCTCAGTAAATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTT 315
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 180 CCAAGCTCTGCTCAGTAAATCCGAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTT 239
Query 316 AACGATCCCCTGTCCTGAAGATACATTCATCAATGTGACTTCTCGGTTCCAACGATGATG 375
|||||| || |||||||||||||| ||||||||||||||||||||| ||||| ||| ||
Sbjct 240 AACGATTCCTTGTCCTGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGAT--TG 297
Query 376 AGCCAACATTTTTCTTC 392
| ||||||||||| |||
Sbjct 298 ATCCAACATTTTT-TTC 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5