BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18030.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1 449 7e-126
Ahg941329 jgi|Araly1|941329|scaffold_601873.1 388 2e-107
Ahg941320 jgi|Araly1|941320|scaffold_601864.1 370 6e-102
Ahg941326 jgi|Araly1|941326|scaffold_601870.1 340 4e-93
Ahg490650 jgi|Araly1|490650|fgenesh2_kg.7__83__AT4G38840.1 111 4e-24
> Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1
Length=420
Score = 449 bits (243), Expect = 7e-126
Identities = 280/296 (95%), Gaps = 9/296 (3%)
Strand=Plus/Plus
Query 89 AGATATGGCTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCA-C-C 146
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 AGAAATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGC 60
Query 147 -GCA---TCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAA 202
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAA 120
Query 203 GAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAA 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAA 180
Query 263 ATCCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGA 322
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGA 240
Query 323 AGATACCTTCATCAATGTGACTTCTCGGCTCCAATGATCATGATGATCCGACATTT 378
|||||||||||||| ||||||||||||||||||||||| || | |||| ||||||
Sbjct 241 AGATACCTTCATCACTGTGACTTCTCGGCTCCAATGATGAT--T-ATCCAACATTT 293
> Ahg941329 jgi|Araly1|941329|scaffold_601873.1
Length=313
Score = 388 bits (210), Expect = 2e-107
Identities = 266/292 (91%), Gaps = 8/292 (3%)
Strand=Plus/Plus
Query 93 ATGGCTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCA-C-C-GCA 149
|||||||||||||||||||| ||||| ||||||||||||||||||||||||| | | |||
Sbjct 21 ATGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 80
Query 150 ---TCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAGA 206
|| || ||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 81 CCCTCTGCAGCACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAAAAGAAGAGA 140
Query 207 TATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAATCC 266
||||||||||| | || || |||| ||| ||||||||||||||||||||||||||||||
Sbjct 141 TATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 200
Query 267 GAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGAT 326
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 201 GAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 260
Query 327 ACCTTCATCAATGTGACTTCTCGGCTCCAATGATCATGATGATCCGACATTT 378
|| ||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 261 ACATTCATCAATGTGACTTCTCGGCTCCAATGATGAT--TGATCCAACATTT 310
> Ahg941320 jgi|Araly1|941320|scaffold_601864.1
Length=314
Score = 370 bits (200), Expect = 6e-102
Identities = 260/288 (90%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 79 CAAAAATAACAGATATGGCTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCC 138
||||||||| | | |||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 10 CAAAAATAA-A-AGATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCC 67
Query 139 GCTCCA-C-C-GCA---TCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGA 192
|||||| | | ||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 68 GCTCCACCGCAGCAGCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGA 127
Query 193 GCCAGAAGAAGAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTC 252
||| ||||||||||||||||||||| ||||||| || | |||||| || || |||||||
Sbjct 128 GCCTGAAGAAGAGATATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTC 187
Query 253 TTCTCAGTAAATCCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCC 312
| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct 188 TGCTCAGTAAATCCGAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTC 247
Query 313 CTTGTCCTGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CTTGTCCTGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGAT 295
> Ahg941326 jgi|Araly1|941326|scaffold_601870.1
Length=313
Score = 340 bits (184), Expect = 4e-93
Identities = 250/281 (89%), Gaps = 8/281 (3%)
Strand=Plus/Plus
Query 93 ATGGCTTTGGTGAGAAGTCTATTGGGTG-CAAAGAAGATTCTAAGCCGCTCCA-C-C-GC 148
|||||| |||||||||||||| |||||| |||| ||||||||||||||||||| | | ||
Sbjct 21 ATGGCTCTGGTGAGAAGTCTACTGGGTGCCAAA-AAGATTCTAAGCCGCTCCACCGCAGC 79
Query 149 A---TCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAG 205
| || |||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 80 AGTCTCAGCGGCACCAATAGGGTTTCTTACAGTGTACGTAGGAGAGAGCCAGAAGAAGAG 139
Query 206 ATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAATC 265
||||| ||||| ||||||||| ||| ||| ||||| ||||||||||| |||||||||||
Sbjct 140 GTATTTAGTGCCACTCTCATACCTGAACCAGCCTTCGTTTCAAGCTCTGCTCAGTAAATC 199
Query 266 CGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGA 325
|| ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 200 TGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAAGA 259
Query 326 TACCTTCATCAATGTGACTTCTCGGCTCCAATGATCATGAT 366
|||||||||||| || ||||||||||||||||||| |||||
Sbjct 260 TACCTTCATCAACGTTACTTCTCGGCTCCAATGATGATGAT 300
> Ahg490650 jgi|Araly1|490650|fgenesh2_kg.7__83__AT4G38840.1
Length=532
Score = 111 bits (60), Expect = 4e-24
Identities = 167/216 (77%), Gaps = 18/216 (8%)
Strand=Plus/Plus
Query 159 CCAAAAGGGTTTCTT-GCGGTGTACGTAGGAG-AGAGCCAGAAGAAGAGATATT-TGGTG 215
|||||| || | ||| ||||| |||||||||| | | ||| |||||||| || | ||
Sbjct 182 CCAAAA-GGCTACTTAGCGGTTTACGTAGGAGAACA-AAAGATGAAGAGAT-TTGTAGTT 238
Query 216 CCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCT-TCTCAGTAAA-TCCGAGGAAG 273
||| | || ||||| | ||| ||||||||||||| ||| | | || ||| | ||||||
Sbjct 239 CCGGTTTCGTACTTAAACCAGCCTTCATTTCAAGATCTAT-TAAG-AAAGGCAGAGGAAA 296
Query 274 AGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCC-TGAAGATACCTTC 332
||||||||||||||||||||||||||||| | || |||||||| | |||||| | ||
Sbjct 297 AGTTTGGATTTGATCATCCAATGGGTGGCCTCACAATCCCTTG-CAGTGAAGAAATTTTT 355
Query 333 ATCAATG-T-GACTTCTCGGCTCCAA-TGATCATGA 365
|| | | | | ||||||| || ||| |||||||||
Sbjct 356 ATTGA-GCTTG-CTTCTCG-CTTCAACTGATCATGA 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18314682720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5