BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18040.1 Length=1076 Score E Sequences producing significant alignments: (Bits) Value Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720 806 0.0 Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1 636 0.0 Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721 579 2e-164 Ahg889149 jgi|Araly1|889149|Al_scaffold_0007_1135 494 7e-139 > Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720 Length=834 Score = 806 bits (436), Expect = 0.0 Identities = 590/662 (89%), Gaps = 19/662 (3%) Strand=Plus/Plus Query 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 186 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCA 245 Query 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTATATGGTGGAAAATGTCTGGAA 359 || |||||||||| ||||| |||||||| | | |||||||||||||||||| |||||||| Sbjct 246 ACAAAGCTCTCAGCTCACTTTCGAAAACATCCTTCAGTATATGGTGGAAAACGTCTGGAA 305 Query 360 TAAGAGGTAAGATGTGCAGGGAGA--GGGAGCAACCA-CTCACTGTCAAAGACTGCCTTG 416 |||||| |||||||||||||||| ||||||||| | ||||| |||||||||||||||| Sbjct 306 CAAGAGGGAAGATGTGCAGGGAGAAAGGGAGCAAC-ATCTCACCGTCAAAGACTGCCTTG 364 Query 417 AATGTGCTTTCAAGAAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACAT 476 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | Sbjct 365 AATGTGCTTTCAAGAATGGGCTACCGAGAAGAGAACATTGGTCACATGTGGGATGTACGT 424 Query 477 TCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGAAAGGAGAAGTGATTG 536 |||||||||| |||||| |||||||||| || ||||| |||||||||||||||||||||| Sbjct 425 TCAAGGCTCCACCATTTACTTGTCACATTCCTCGCGTCCCCATGAAAGGAGAAGTGATTG 484 Query 537 AGACTAAGAGTTTGGATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGTGCAAGAC 596 ||||||||||| |||||||||| | ||||||||||| |||||||||||||| ||||||| Sbjct 485 AGACTAAGAGTGTGGATGAAGCAATGAAGCTGTTGATGAAACAACCGGTGGGAGCAAGAC 544 Query 597 TCCATGTGTTCAGTCCAGACCTTGATAATGTTGGAGAGGG-AGTTTACGAGGGCCTGTCT 655 ||||| | ||||||||||| ||||| |||||||||||| | ||||||| |||| ||| Sbjct 545 TCCATTTATTCAGTCCAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTCA 603 Query 656 AGCCTGTCTCGTAAGGAATCACGCTATGTTGGACTTAGGGATGTCATCATAGTTGCAGTG 715 || | | | | | ||| |||||||||||||||| |||| ||| |||||||||||| Sbjct 604 AG--TAA-T-G---G-A-TCAAGCTATGTTGGACTTAGAGATGCCATGATAGTTGCAGTG 654 Query 716 AATAAGTCCGAGGGAAAAACT-GTTGCT-ACTGTGAAGATATGTTACAAGAAGAAGACTT 773 |||||||||||| ||||| | |||| | | ||| |||| ||||||||||||||||| | Sbjct 655 GATAAGTCCGAGG-AAAAATTTGTTG-TGAAAGTGCAGATCTGTTACAAGAAGAAGACAT 712 Query 774 CATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGCGAGGAGTCTC 833 ||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||||||| Sbjct 713 CATTTGTCAAAGTGTGTATGAGGCGTATGTTTGTCCAGCTTGATGGTGATGAGGAGTCTC 772 Query 834 AGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTATCAACT 893 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 773 AGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACT 832 Query 894 AA 895 || Sbjct 833 AA 834 > Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1 Length=1050 Score = 636 bits (344), Expect = 0.0 Identities = 687/844 (81%), Gaps = 57/844 (7%) Strand=Plus/Plus Query 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299 |||||||||||||||||||||||| | |||||||||||| | |||||||||||||| | Sbjct 226 CTCAGCTCAGTATTTGGTGGATAACGTTGGGAAGGAAGAAGTTGAGGGAGAAATGGATCA 285 Query 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTA-TATGGTGGAAAATGTCTGGA 358 || ||||| ||||| |||| | |||||| | | || ||| | ||||||| || || ||| Sbjct 286 ACAAAGCTGTCAGTACACTGTTGAAAACCTCCTTCGGTACT-TGGTGGAGAACGTTTGG- 343 Query 359 AT-AAG-AGGTAAGATGTGCAGGGAG--A-GG--GAGCAA--CC---A-CTCACTGTCAA 405 || ||| ||| |||||| |||||||| | || | ||| || | ||||||| || Sbjct 344 ATCAAGAAGG-AAGATGGGCAGGGAGAAATGGATCAACAACGCCGTGAGTTCACTGTGAA 402 Query 406 AGACTGCCTTGAATGTGCTTTCAAGAAAGGGCTACCGAGAAGAGAACATTGGGCACATGT 465 ||||||| |||||| |||||| || |||||||| || ||||| | |||||||| ||||| Sbjct 403 AGACTGCTTTGAATTTGCTTTTAAAAAAGGGCTTCCAAGAAGTGTGCATTGGGCGCATGT 462 Query 466 GGGATGTACATTCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGAAAGG 525 |||||| || |||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 463 GGGATGCACGTTCAAGGCTCCCCCATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGG 522 Query 526 AGAAGTGATTGAGACTA-AGAGTTTGGATGAAGCGTTTAAGCT-GTTGATTAAACAACCG 583 ||||||||||||| ||| ||| ||||| |||||| || ||||| | | || ||||||| Sbjct 523 AGAAGTGATTGAGGCTACAGA-TTTGGGTGAAGCATTGAAGCTGGGT-ATGCAACAACCA 580 Query 584 GTGGGTGCAAGACTCCATGTGTTCAGTCCAGACCTTGATAATGTTGGAGAGGGAGTTTAC 643 ||||| ||||| | ||||||||||||||||| |||||| ||||||||||||| ||||| Sbjct 581 GTGGGAGCAAGGTTGCATGTGTTCAGTCCAGAGTTTGATAGTGTTGGAGAGGGAATTTAC 640 Query 644 GA-GGGCCTGTCTAGCCTGTCTCGTAA-GGAATCACGCTATGTTGGACTTAGGGATGTCA 701 || ||||| ||| | | |||| |||| || |||||||||| ||||| ||||| | Sbjct 641 GATGGGCC-GTC-A----G----GTAATGGAA-CAAGCTATGTTGGCCTTAGAGATGTGA 689 Query 702 TCATAGTTGCAGTGAATAAG-TCCGAGGGAAAAACTGTTGCT-ACTGTGAAGATATGTTA 759 |||| |||| || | | | | | | ||||| ||||||||| | |||||| ||||||| || Sbjct 690 TCATGGTTGAAGCGGAGAGGAT-CAAGGGAGAAACTGTTG-TGACTGTGCAGATATGCTA 747 Query 760 CAAGAAGAAGACTTCATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTCCAGCTTGGTGG 819 ||||||||||||||||||||||||||||| | ||| ||||| || ||| |||| || Sbjct 748 CAAGAAGAAGACTTCATTTGTCAAAGTGTCTACGAGAAGTATGATTCTCCCGCTTAACGG 807 Query 820 TGGCGAGGAGTCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACG 879 || ||| ||||||||||| | |||||||||| |||||||||||||||||||||||||||| Sbjct 808 TGACGACGAGTCTCAGGTCAGAGAGCCAACATGTCTGCTTGTTGACTTCTGTATCCCACG 867 Query 880 CTTATCTATCAACTAAACAAGAG--CTGAGATCTTGGAAAGTATCTC-----CT--A-G- 928 || ||||| ||||||||||||| |||||||||||| |||||||| || | | Sbjct 868 TTTCTCTATTAACTAAACAAGAGAGCTGAGATCTTGGTAAGTATCTGGAGAACTTTATGG 927 Query 929 T--T-GTGGAACCTCTCTATGTTGGTC-TCATTTTAAGAATGTTTTATCAGACTTATTTT 984 | | ||||||||| | | |||| ||| | || ||||||||||||||||||||||||||| Sbjct 928 TAGTTGTGGAACCTGT-T-TGTTAGTCCT-ATATTAAGAATGTTTTATCAGACTTATTTT 984 Query 985 CTGTTTTATGTATTTTGAAAACCGTATGCTTGTTGTGAAACTCTGTTTGTGGTCTCAAGT 1044 |||||| | |||| ||||||||| ||||||||||||| ||||| ||||||||||| || | Sbjct 985 CTGTTTAA-GTATCTTGAAAACCTTATGCTTGTTGTGGAACTCAGTTTGTGGTCTGAAAT 1043 Query 1045 TAAG 1048 |||| Sbjct 1044 TAAG 1047 > Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721 Length=774 Score = 579 bits (313), Expect = 2e-164 Identities = 418/467 (90%), Gaps = 13/467 (3%) Strand=Plus/Plus Query 431 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACATTCAAGGCTCCCCCA 490 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 319 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCA 378 Query 491 TTTGCTTGTCACATACCCCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 550 |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct 379 TTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 438 Query 551 GATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGTGCAAGACTCCATGTGTTCAGT 610 |||||||| || |||||||||| ||||||||||||| |||||||||||| | |||||| Sbjct 439 GATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGT 498 Query 611 CCAGACCTTGATAATGTTGGAGA-GGGAGTTTACGAGGGCCTGTCTAGCCTGTCTCGTAA 669 ||||| ||||| ||||||||| |||| ||||||| |||| ||| | | | || Sbjct 499 CCAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTC-A---AG---C--AA 548 Query 670 -GGAATCACGCTATGTTGGACTTAGGGATGTCATCATAGTTGCAGTGAATAAGTCCGAGG 728 || |||| |||||||||||||||| |||| |||||||||||||||| ||||||| |||| Sbjct 549 TGG-ATCAAGCTATGTTGGACTTAGAGATGCCATCATAGTTGCAGTGGATAAGTCTGAGG 607 Query 729 GAAAAACTGTTGCTACTGTGAAGATATGTTACAAGAAGAAGACTTCATTTGTCAAAGTGT 788 |||| |||||| || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 608 GAAAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGT 667 Query 789 GTTTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGCGAGGAGTCTCAGGTGAAAGAGCCAA 848 || |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 668 GTATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAA 727 Query 849 CAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTATCAACTAA 895 |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 728 CAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774 Score = 163 bits (88), Expect = 2e-39 Identities = 118/133 (89%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 186 CTCAGCTCAGTATTTGGTGGATAACGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCA 245 Query 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTATATGGTGGAAAATGTCTGGAA 359 || |||||| ||| |||||||||||||| | | ||||||||||| || || || ||||| Sbjct 246 ACAAAGCTCGCAGCTCACTATCGAAAACCTCCTTCAGTATATGGAGGCGAACGTTTGGAA 305 Query 360 TAAGAGGTAAGAT 372 |||||| ||||| Sbjct 306 CAAGAGGGAAGAT 318 Score = 159 bits (86), Expect = 3e-38 Identities = 100/107 (93%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 137 ATGAATATGATTCAGCGATTCATGCAATCTATGGCAAAGACGCGTGGCCTCTGTCATCCA 196 ||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1 ATGGATATGAATCAGCTATTCATGCAATCTATGGCAAAGACTCGTGGCCTCTGTCACCCA 60 Query 197 GATTGCGTAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCGTCTCA 243 ||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 61 GATTGCGAAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCATCTCA 107 > Ahg889149 jgi|Araly1|889149|Al_scaffold_0007_1135 Length=843 Score = 494 bits (267), Expect = 7e-139 Identities = 553/684 (81%), Gaps = 48/684 (7%) Strand=Plus/Plus Query 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299 ||||||||||| |||| ||||||| ||||| ||||||||||||| ||||||||||||| | Sbjct 180 CTCAGCTCAGTTTTTGATGGATAACGCTGGAAAGGAAGACGACCCGGGAGAAATGGATCA 239 Query 300 ACCAA-GCTCTCAGTTCACTATCGAAAACTTG-CATCAG-TA-TATGGTGGAAAATGTCT 355 | ||| || |||| |||||| ||||||| || | || | || | ||| |||||| || | Sbjct 240 A-CAACGCAGTCAGGTCACTACCGAAAAC-TGCCTTC-GCTACT-TGGCGGAAAACGTTT 295 Query 356 GGAATAAGAGGTAAGAT-GTGCAG-G-GAGA-GG--GAGCAAC-C-----ACTCACTGTC 403 ||| |||||| ||||| | |||| | || | || | |||| | ||||||||| Sbjct 296 GGACCAAGAGGGAAGATCG-GCAGAGAGACATGGATCAACAACGCTGTGTGCTCACTGTC 354 Query 404 AAAGACTGCCTTGAA-TGTGCTTTCAAGAAA-GGGCTACCGAGAAGAGAACATTGGGCAC 461 || |||||||||||| | |||||| || ||| |||||||||||||||||||||||||||| Sbjct 355 AAGGACTGCCTTGAACT-TGCTTTTAA-AAAGGGGCTACCGAGAAGAGAACATTGGGCAC 412 Query 462 ATGTGGGATGTACATTCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGA 521 || |||||||||| |||||||||||||||||||||||||| || || ||||| ||| ||| Sbjct 413 ATTTGGGATGTACGTTCAAGGCTCCCCCATTTGCTTGTCAAATTCCTCGCGTTCCCGTGA 472 Query 522 AAGGAGAAGTGATTGAGACTAAGAGTTTGGATGAAGCGTTTAAGCTGTTGATTAAACAAC 581 ||||||||||| ||||| |||||| ||| |||||||| || ||||||||| | | |||| Sbjct 473 AAGGAGAAGTGGTTGAGGCTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAAC 532 Query 582 CGGTGGGTGCAAGACTCCATGTGTTCAGTCC--AGACCTTGATAATGTTGGAGAGGG-AG 638 ||||||| |||| ||| ||| |||||||||| ||| ||||| |||||||||||| | Sbjct 533 CGGTGGGAGCAAAACTGCATTTGTTCAGTCCGCAGA--TTGATCGTGTTGGAGAGGGGA- 589 Query 639 TTTACGAGGGCCTGTCTAGCCTGTCTCGTAAGGAATCACGCTATGTTGGACTTAGGGATG 698 ||||||| |||| | || | | |||| ||| || |||||||||||||||| |||| Sbjct 590 TTTACGATGGCCC--C--GC--GACAAGTAATGAAACATGCTATGTTGGACTTAGAGATG 643 Query 699 T-CATCATAG-TTGCAGTGAATAAGTCCGAGGGAAAAACTGTTGCTACTGTGAAGATATG 756 | | | |||| || ||||| | |||| ||||||| | |||||||||| ||||||||||| Sbjct 644 TGCTT-ATAGGTT-CAGTGGAGAAGTTCGAGGGAGATACTGTTGCTATTGTGAAGATATC 701 Query 757 TTACAAGAAGAAGACTT-CATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTC-CAGCTT 814 |||||||||||| ||| ||||||||||||||| | ||| |||||||||| || |||| Sbjct 702 CTACAAGAAGAAG-CTTTCATTTGTCAAAGTGTCTCTGACCCGTATGTTTCTCTCAGCAC 760 Query 815 GG--TGGTGGCGAGGAGTCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTC-TGT 871 | ||| || |||||| || | | || ||||||||||||||||||||||||| | | Sbjct 761 CACATAATGGTGACGAGTCTAAGTTCATAGGGCCAACAGGTCTGCTTGTTGACTTCCT-T 819 Query 872 ATCCCACGCTTATCTATCAACTAA 895 |||| |||||||||||||||||| Sbjct 820 GTCCCGCGCTTATCTATCAACTAA 843 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40067185767 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5