BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18040.1
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720 806 0.0
Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1 636 0.0
Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721 579 2e-164
Ahg889149 jgi|Araly1|889149|Al_scaffold_0007_1135 494 7e-139
> Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720
Length=834
Score = 806 bits (436), Expect = 0.0
Identities = 590/662 (89%), Gaps = 19/662 (3%)
Strand=Plus/Plus
Query 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 186 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCA 245
Query 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTATATGGTGGAAAATGTCTGGAA 359
|| |||||||||| ||||| |||||||| | | |||||||||||||||||| ||||||||
Sbjct 246 ACAAAGCTCTCAGCTCACTTTCGAAAACATCCTTCAGTATATGGTGGAAAACGTCTGGAA 305
Query 360 TAAGAGGTAAGATGTGCAGGGAGA--GGGAGCAACCA-CTCACTGTCAAAGACTGCCTTG 416
|||||| |||||||||||||||| ||||||||| | ||||| ||||||||||||||||
Sbjct 306 CAAGAGGGAAGATGTGCAGGGAGAAAGGGAGCAAC-ATCTCACCGTCAAAGACTGCCTTG 364
Query 417 AATGTGCTTTCAAGAAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACAT 476
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct 365 AATGTGCTTTCAAGAATGGGCTACCGAGAAGAGAACATTGGTCACATGTGGGATGTACGT 424
Query 477 TCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGAAAGGAGAAGTGATTG 536
|||||||||| |||||| |||||||||| || ||||| ||||||||||||||||||||||
Sbjct 425 TCAAGGCTCCACCATTTACTTGTCACATTCCTCGCGTCCCCATGAAAGGAGAAGTGATTG 484
Query 537 AGACTAAGAGTTTGGATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGTGCAAGAC 596
||||||||||| |||||||||| | ||||||||||| |||||||||||||| |||||||
Sbjct 485 AGACTAAGAGTGTGGATGAAGCAATGAAGCTGTTGATGAAACAACCGGTGGGAGCAAGAC 544
Query 597 TCCATGTGTTCAGTCCAGACCTTGATAATGTTGGAGAGGG-AGTTTACGAGGGCCTGTCT 655
||||| | ||||||||||| ||||| |||||||||||| | ||||||| |||| |||
Sbjct 545 TCCATTTATTCAGTCCAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTCA 603
Query 656 AGCCTGTCTCGTAAGGAATCACGCTATGTTGGACTTAGGGATGTCATCATAGTTGCAGTG 715
|| | | | | | ||| |||||||||||||||| |||| ||| ||||||||||||
Sbjct 604 AG--TAA-T-G---G-A-TCAAGCTATGTTGGACTTAGAGATGCCATGATAGTTGCAGTG 654
Query 716 AATAAGTCCGAGGGAAAAACT-GTTGCT-ACTGTGAAGATATGTTACAAGAAGAAGACTT 773
|||||||||||| ||||| | |||| | | ||| |||| ||||||||||||||||| |
Sbjct 655 GATAAGTCCGAGG-AAAAATTTGTTG-TGAAAGTGCAGATCTGTTACAAGAAGAAGACAT 712
Query 774 CATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGCGAGGAGTCTC 833
||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 713 CATTTGTCAAAGTGTGTATGAGGCGTATGTTTGTCCAGCTTGATGGTGATGAGGAGTCTC 772
Query 834 AGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTATCAACT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 773 AGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACT 832
Query 894 AA 895
||
Sbjct 833 AA 834
> Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1
Length=1050
Score = 636 bits (344), Expect = 0.0
Identities = 687/844 (81%), Gaps = 57/844 (7%)
Strand=Plus/Plus
Query 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299
|||||||||||||||||||||||| | |||||||||||| | |||||||||||||| |
Sbjct 226 CTCAGCTCAGTATTTGGTGGATAACGTTGGGAAGGAAGAAGTTGAGGGAGAAATGGATCA 285
Query 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTA-TATGGTGGAAAATGTCTGGA 358
|| ||||| ||||| |||| | |||||| | | || ||| | ||||||| || || |||
Sbjct 286 ACAAAGCTGTCAGTACACTGTTGAAAACCTCCTTCGGTACT-TGGTGGAGAACGTTTGG- 343
Query 359 AT-AAG-AGGTAAGATGTGCAGGGAG--A-GG--GAGCAA--CC---A-CTCACTGTCAA 405
|| ||| ||| |||||| |||||||| | || | ||| || | ||||||| ||
Sbjct 344 ATCAAGAAGG-AAGATGGGCAGGGAGAAATGGATCAACAACGCCGTGAGTTCACTGTGAA 402
Query 406 AGACTGCCTTGAATGTGCTTTCAAGAAAGGGCTACCGAGAAGAGAACATTGGGCACATGT 465
||||||| |||||| |||||| || |||||||| || ||||| | |||||||| |||||
Sbjct 403 AGACTGCTTTGAATTTGCTTTTAAAAAAGGGCTTCCAAGAAGTGTGCATTGGGCGCATGT 462
Query 466 GGGATGTACATTCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGAAAGG 525
|||||| || |||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 463 GGGATGCACGTTCAAGGCTCCCCCATTTGCTTGTCAAATACCTCGCGTTCCCATGAAAGG 522
Query 526 AGAAGTGATTGAGACTA-AGAGTTTGGATGAAGCGTTTAAGCT-GTTGATTAAACAACCG 583
||||||||||||| ||| ||| ||||| |||||| || ||||| | | || |||||||
Sbjct 523 AGAAGTGATTGAGGCTACAGA-TTTGGGTGAAGCATTGAAGCTGGGT-ATGCAACAACCA 580
Query 584 GTGGGTGCAAGACTCCATGTGTTCAGTCCAGACCTTGATAATGTTGGAGAGGGAGTTTAC 643
||||| ||||| | ||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 581 GTGGGAGCAAGGTTGCATGTGTTCAGTCCAGAGTTTGATAGTGTTGGAGAGGGAATTTAC 640
Query 644 GA-GGGCCTGTCTAGCCTGTCTCGTAA-GGAATCACGCTATGTTGGACTTAGGGATGTCA 701
|| ||||| ||| | | |||| |||| || |||||||||| ||||| ||||| |
Sbjct 641 GATGGGCC-GTC-A----G----GTAATGGAA-CAAGCTATGTTGGCCTTAGAGATGTGA 689
Query 702 TCATAGTTGCAGTGAATAAG-TCCGAGGGAAAAACTGTTGCT-ACTGTGAAGATATGTTA 759
|||| |||| || | | | | | | ||||| ||||||||| | |||||| ||||||| ||
Sbjct 690 TCATGGTTGAAGCGGAGAGGAT-CAAGGGAGAAACTGTTG-TGACTGTGCAGATATGCTA 747
Query 760 CAAGAAGAAGACTTCATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTCCAGCTTGGTGG 819
||||||||||||||||||||||||||||| | ||| ||||| || ||| |||| ||
Sbjct 748 CAAGAAGAAGACTTCATTTGTCAAAGTGTCTACGAGAAGTATGATTCTCCCGCTTAACGG 807
Query 820 TGGCGAGGAGTCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACG 879
|| ||| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 808 TGACGACGAGTCTCAGGTCAGAGAGCCAACATGTCTGCTTGTTGACTTCTGTATCCCACG 867
Query 880 CTTATCTATCAACTAAACAAGAG--CTGAGATCTTGGAAAGTATCTC-----CT--A-G- 928
|| ||||| ||||||||||||| |||||||||||| |||||||| || | |
Sbjct 868 TTTCTCTATTAACTAAACAAGAGAGCTGAGATCTTGGTAAGTATCTGGAGAACTTTATGG 927
Query 929 T--T-GTGGAACCTCTCTATGTTGGTC-TCATTTTAAGAATGTTTTATCAGACTTATTTT 984
| | ||||||||| | | |||| ||| | || |||||||||||||||||||||||||||
Sbjct 928 TAGTTGTGGAACCTGT-T-TGTTAGTCCT-ATATTAAGAATGTTTTATCAGACTTATTTT 984
Query 985 CTGTTTTATGTATTTTGAAAACCGTATGCTTGTTGTGAAACTCTGTTTGTGGTCTCAAGT 1044
|||||| | |||| ||||||||| ||||||||||||| ||||| ||||||||||| || |
Sbjct 985 CTGTTTAA-GTATCTTGAAAACCTTATGCTTGTTGTGGAACTCAGTTTGTGGTCTGAAAT 1043
Query 1045 TAAG 1048
||||
Sbjct 1044 TAAG 1047
> Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721
Length=774
Score = 579 bits (313), Expect = 2e-164
Identities = 418/467 (90%), Gaps = 13/467 (3%)
Strand=Plus/Plus
Query 431 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACATTCAAGGCTCCCCCA 490
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 319 AAAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCA 378
Query 491 TTTGCTTGTCACATACCCCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 550
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 379 TTTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTG 438
Query 551 GATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGTGCAAGACTCCATGTGTTCAGT 610
|||||||| || |||||||||| ||||||||||||| |||||||||||| | ||||||
Sbjct 439 GATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGT 498
Query 611 CCAGACCTTGATAATGTTGGAGA-GGGAGTTTACGAGGGCCTGTCTAGCCTGTCTCGTAA 669
||||| ||||| ||||||||| |||| ||||||| |||| ||| | | | ||
Sbjct 499 CCAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTC-A---AG---C--AA 548
Query 670 -GGAATCACGCTATGTTGGACTTAGGGATGTCATCATAGTTGCAGTGAATAAGTCCGAGG 728
|| |||| |||||||||||||||| |||| |||||||||||||||| ||||||| ||||
Sbjct 549 TGG-ATCAAGCTATGTTGGACTTAGAGATGCCATCATAGTTGCAGTGGATAAGTCTGAGG 607
Query 729 GAAAAACTGTTGCTACTGTGAAGATATGTTACAAGAAGAAGACTTCATTTGTCAAAGTGT 788
|||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 608 GAAAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGT 667
Query 789 GTTTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGCGAGGAGTCTCAGGTGAAAGAGCCAA 848
|| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 668 GTATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAA 727
Query 849 CAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTATCAACTAA 895
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 728 CAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774
Score = 163 bits (88), Expect = 2e-39
Identities = 118/133 (89%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 186 CTCAGCTCAGTATTTGGTGGATAACGCTGGGAAGGAAGACGACCAGGGAGAAATGGATCA 245
Query 300 ACCAAGCTCTCAGTTCACTATCGAAAACTTGCATCAGTATATGGTGGAAAATGTCTGGAA 359
|| |||||| ||| |||||||||||||| | | ||||||||||| || || || |||||
Sbjct 246 ACAAAGCTCGCAGCTCACTATCGAAAACCTCCTTCAGTATATGGAGGCGAACGTTTGGAA 305
Query 360 TAAGAGGTAAGAT 372
|||||| |||||
Sbjct 306 CAAGAGGGAAGAT 318
Score = 159 bits (86), Expect = 3e-38
Identities = 100/107 (93%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 137 ATGAATATGATTCAGCGATTCATGCAATCTATGGCAAAGACGCGTGGCCTCTGTCATCCA 196
||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1 ATGGATATGAATCAGCTATTCATGCAATCTATGGCAAAGACTCGTGGCCTCTGTCACCCA 60
Query 197 GATTGCGTAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCGTCTCA 243
||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GATTGCGAAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCATCTCA 107
> Ahg889149 jgi|Araly1|889149|Al_scaffold_0007_1135
Length=843
Score = 494 bits (267), Expect = 7e-139
Identities = 553/684 (81%), Gaps = 48/684 (7%)
Strand=Plus/Plus
Query 240 CTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAATGGATGA 299
||||||||||| |||| ||||||| ||||| ||||||||||||| ||||||||||||| |
Sbjct 180 CTCAGCTCAGTTTTTGATGGATAACGCTGGAAAGGAAGACGACCCGGGAGAAATGGATCA 239
Query 300 ACCAA-GCTCTCAGTTCACTATCGAAAACTTG-CATCAG-TA-TATGGTGGAAAATGTCT 355
| ||| || |||| |||||| ||||||| || | || | || | ||| |||||| || |
Sbjct 240 A-CAACGCAGTCAGGTCACTACCGAAAAC-TGCCTTC-GCTACT-TGGCGGAAAACGTTT 295
Query 356 GGAATAAGAGGTAAGAT-GTGCAG-G-GAGA-GG--GAGCAAC-C-----ACTCACTGTC 403
||| |||||| ||||| | |||| | || | || | |||| | |||||||||
Sbjct 296 GGACCAAGAGGGAAGATCG-GCAGAGAGACATGGATCAACAACGCTGTGTGCTCACTGTC 354
Query 404 AAAGACTGCCTTGAA-TGTGCTTTCAAGAAA-GGGCTACCGAGAAGAGAACATTGGGCAC 461
|| |||||||||||| | |||||| || ||| ||||||||||||||||||||||||||||
Sbjct 355 AAGGACTGCCTTGAACT-TGCTTTTAA-AAAGGGGCTACCGAGAAGAGAACATTGGGCAC 412
Query 462 ATGTGGGATGTACATTCAAGGCTCCCCCATTTGCTTGTCACATACCCCGCGTGCCCATGA 521
|| |||||||||| |||||||||||||||||||||||||| || || ||||| ||| |||
Sbjct 413 ATTTGGGATGTACGTTCAAGGCTCCCCCATTTGCTTGTCAAATTCCTCGCGTTCCCGTGA 472
Query 522 AAGGAGAAGTGATTGAGACTAAGAGTTTGGATGAAGCGTTTAAGCTGTTGATTAAACAAC 581
||||||||||| ||||| |||||| ||| |||||||| || ||||||||| | | ||||
Sbjct 473 AAGGAGAAGTGGTTGAGGCTAAGACTTTTGATGAAGCATTCAAGCTGTTGGTGCATCAAC 532
Query 582 CGGTGGGTGCAAGACTCCATGTGTTCAGTCC--AGACCTTGATAATGTTGGAGAGGG-AG 638
||||||| |||| ||| ||| |||||||||| ||| ||||| |||||||||||| |
Sbjct 533 CGGTGGGAGCAAAACTGCATTTGTTCAGTCCGCAGA--TTGATCGTGTTGGAGAGGGGA- 589
Query 639 TTTACGAGGGCCTGTCTAGCCTGTCTCGTAAGGAATCACGCTATGTTGGACTTAGGGATG 698
||||||| |||| | || | | |||| ||| || |||||||||||||||| ||||
Sbjct 590 TTTACGATGGCCC--C--GC--GACAAGTAATGAAACATGCTATGTTGGACTTAGAGATG 643
Query 699 T-CATCATAG-TTGCAGTGAATAAGTCCGAGGGAAAAACTGTTGCTACTGTGAAGATATG 756
| | | |||| || ||||| | |||| ||||||| | |||||||||| |||||||||||
Sbjct 644 TGCTT-ATAGGTT-CAGTGGAGAAGTTCGAGGGAGATACTGTTGCTATTGTGAAGATATC 701
Query 757 TTACAAGAAGAAGACTT-CATTTGTCAAAGTGTGTTTGAGCCGTATGTTTGTC-CAGCTT 814
|||||||||||| ||| ||||||||||||||| | ||| |||||||||| || ||||
Sbjct 702 CTACAAGAAGAAG-CTTTCATTTGTCAAAGTGTCTCTGACCCGTATGTTTCTCTCAGCAC 760
Query 815 GG--TGGTGGCGAGGAGTCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTC-TGT 871
| ||| || |||||| || | | || ||||||||||||||||||||||||| | |
Sbjct 761 CACATAATGGTGACGAGTCTAAGTTCATAGGGCCAACAGGTCTGCTTGTTGACTTCCT-T 819
Query 872 ATCCCACGCTTATCTATCAACTAA 895
|||| ||||||||||||||||||
Sbjct 820 GTCCCGCGCTTATCTATCAACTAA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5