BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18050.1
Length=488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941326 jgi|Araly1|941326|scaffold_601870.1 440 4e-123
Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1 399 7e-111
Ahg941320 jgi|Araly1|941320|scaffold_601864.1 379 9e-105
Ahg941329 jgi|Araly1|941329|scaffold_601873.1 363 9e-100
> Ahg941326 jgi|Araly1|941326|scaffold_601870.1
Length=313
Score = 440 bits (238), Expect = 4e-123
Identities = 289/314 (92%), Gaps = 2/314 (1%)
Strand=Plus/Plus
Query 73 GACAAATAGAG-AATTATAAATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTC 131
|||||| | || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GACAAAGAAAGAAATTATAAATGGCTCTGGTGAGAAGTCTACTGGGTGCCAAAAAGATTC 60
Query 132 TAAGCCGCTCCACCGCAGCAGTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAG 191
||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct 61 TAAGCCGCTCCACCGCAGCAGTCTCAGCGGCACCAATAGGGTTTCTTACAGTGTACGTAG 120
Query 192 GAGAGAGCCAGAAGAAAAGATACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTC 251
|||||||||||||||| || || |||||||||||||||||| ||||||| ||||| ||||
Sbjct 121 GAGAGAGCCAGAAGAAGAGGTATTTAGTGCCACTCTCATACCTGAACCAGCCTTCGTTTC 180
Query 252 AAGCTCTGCTCAGTAAATCTGAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAA 311
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 181 AAGCTCTGCTCAGTAAATCTGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAA 240
Query 312 CGATACCTTGTCATGAAGATACGTTCATCAATGTGACTTCTCGGCTCCAATGATCATGAT 371
|||| ||||||| |||||||| |||||||| || ||||||||||||||||||| |||||
Sbjct 241 CGATCCCTTGTCCCGAAGATACCTTCATCAACGTTACTTCTCGGCTCCAATGATGATGAT 300
Query 372 CCAACATTTTGTTT 385
||| ||||| ||||
Sbjct 301 CCAGCATTT-GTTT 313
> Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1
Length=420
Score = 399 bits (216), Expect = 7e-111
Identities = 266/291 (91%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 90 AAATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTCTAAGCCGCTCCACCGCAG 149
||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 3 AAATGACTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCACCGCAG 62
Query 150 CAGTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAAA 209
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 63 CAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGA 122
Query 210 GATACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTCAAGCTCTGCTCAGTAAAT 269
|||| || ||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 123 GATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAAT 182
Query 270 CTGAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAACGATACCTTGTCATGAAG 329
| || || |||||||| || |||||||| ||||| ||||||||||| ||||||| |||||
Sbjct 183 CCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAG 242
Query 330 ATACGTTCATCAATGTGACTTCTCGGCTCCAATGATCATGATCCAACATTT 380
|||| ||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 243 ATACCTTCATCACTGTGACTTCTCGGCTCCAATGATGATTATCCAACATTT 293
> Ahg941320 jgi|Araly1|941320|scaffold_601864.1
Length=314
Score = 379 bits (205), Expect = 9e-105
Identities = 265/294 (90%), Gaps = 3/294 (1%)
Strand=Plus/Plus
Query 92 ATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTCTAAGCCGCTCCACCGCAGCA 151
|||||| | ||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 22 ATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 81
Query 152 GTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAAAGA 211
| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 82 GCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAGAGA 141
Query 212 TACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTCAAGCTCTGCTCAGTAAATCT 271
|| || |||||| ||||||| || |||||||| || || ||||||||||||||||||||
Sbjct 142 TATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCC 201
Query 272 GAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAACGATACCTTGTCATGAAGAT 331
|| || ||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 202 GAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 261
Query 332 ACGTTCATCAATGTGACTTCTCGGCTCCAATGATCATGATCCAACATTTTGTTT 385
|| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 262 ACCTTCATCAATGTGACTTCTCGGCTCCAATGAT--TGATCCAACATTTT-TTT 312
> Ahg941329 jgi|Araly1|941329|scaffold_601873.1
Length=313
Score = 363 bits (196), Expect = 9e-100
Identities = 261/293 (89%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 90 AAATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTCTAAGCCGCTCCACCGCAG 149
|||||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 19 AAATGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAG 78
Query 150 CAGTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAAA 209
|| ||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 79 CACCCTCTGCAGCACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAAAAGAAGA 138
Query 210 GATACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTCAAGCTCTGCTCAGTAAAT 269
|||| || |||||| | || || |||||||| ||||| ||||||||||| ||||||||||
Sbjct 139 GATATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAAT 198
Query 270 CTGAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAACGATACCTTGTCATGAAG 329
| || || |||||||| ||||||||||| ||||| ||||||||||| ||||||| |||||
Sbjct 199 CCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGTCCTGAAG 258
Query 330 ATACGTTCATCAATGTGACTTCTCGGCTCCAATGATCAT-GATCCAACATTTT 381
|||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 259 ATACATTCATCAATGTGACTTCTCGGCTCCAATGATGATTGATCCAACATTTT 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17704193296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5