BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18065.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720 1050 0.0
Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1 643 0.0
Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721 577 6e-164
Ahg914306 jgi|Araly1|914306|Al_scaffold_0001_4560 95.3 7e-19
> Ahg893724 jgi|Araly1|893724|Al_scaffold_0006_1720
Length=834
Score = 1050 bits (568), Expect = 0.0
Identities = 762/852 (89%), Gaps = 27/852 (3%)
Strand=Plus/Plus
Query 104 ATGGATATGAATCAGCTATTCATGCAATCTATTGCAAACAGTCGTGGACTCTGTCATCCA 163
||| |||||||||||||||||||||||||||| ||| | | |||||| |||||||||||
Sbjct 1 ATGAATATGAATCAGCTATTCATGCAATCTATGGCAGAGACTCGTGGCCTCTGTCATCCG 60
Query 164 GATTGCGAAAAAGCAAATAATGAGCGTGAAGATTATGATGCGTCTCAACATGCCGCTATG 223
||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| ||||||
Sbjct 61 GATTGCGTAAAAGCAAGTAATGAGCAAGAAGATTACGATGCATCTCAACATGCAGCTATG 120
Query 224 GTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAAGCTTGATGCTGTGTA--TA 281
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 121 GTAGCAGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAACCTTGACGCTGTG-AGGT- 178
Query 282 CTGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACAACCAGGGAGAAA 341
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 179 CTGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACGACCAGGGAGAAA 238
Query 342 TGGATCAACAAAGCTCTCAGCTCACTCTCCAAAACTTGCTTCAGTATATGGATG-AAAAT 400
|||||||||||||||||||||||||| || ||||| | ||||||||||||| || ||||
Sbjct 239 TGGATCAACAAAGCTCTCAGCTCACTTTCGAAAACATCCTTCAGTATATGG-TGGAAAAC 297
Query 401 GTCTGGAATAAGAAGGAAGATGTGCAGGGAGAAAGGGAGCAACCA-CTCACTGTCAAAGA 459
|||||||| |||| ||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 298 GTCTGGAACAAGAGGGAAGATGTGCAGGGAGAAAGGGAGCAAC-ATCTCACCGTCAAAGA 356
Query 460 CTGCCTTGAATGTGCTTTCAAGTAA-GGGCTACCGAGAAGTGAGCAGTGGGCACATGTGG 518
|||||||||||||||||||||| || |||||||||||||| || || ||| |||||||||
Sbjct 357 CTGCCTTGAATGTGCTTTCAAG-AATGGGCTACCGAGAAGAGAACATTGGTCACATGTGG 415
Query 519 GATGTCCGTTCAAGGCTCCACCATTTGCCTGTCAGATTCCTCGCGTGCCCATGAAAGGAG 578
||||| |||||||||||||||||||| | ||||| ||||||||||| |||||||||||||
Sbjct 416 GATGTACGTTCAAGGCTCCACCATTTACTTGTCACATTCCTCGCGTCCCCATGAAAGGAG 475
Query 579 AAGTGATTGAGACTAAGAGTTTGGATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGG 638
|||||||||||||||||||| |||||||||| | ||||||||||| |||||||||||||
Sbjct 476 AAGTGATTGAGACTAAGAGTGTGGATGAAGCAATGAAGCTGTTGATGAAACAACCGGTGG 535
Query 639 GAGCAAGACTCCATGTCTTCAGTCCAGAGCTTGATAATGTTGGAGAGGG-ATTTTACGAG 697
|||||||||||||| | |||||||||||| ||||| |||||||||||| |||| ||||
Sbjct 536 GAGCAAGACTCCATTTATTCAGTCCAGAGATTGATCGTGTTGGAGAGGGGATTT-ACGAT 594
Query 698 GGCCTGTCTAGCCAGTCTAGTAAGGAATCACGCTATGTTGGACTTAGGGATGTAATCATA 757
|||| ||| | ||| | | ||| ||| |||||||||||||||| |||| || |||
Sbjct 595 GGCCCGTC-A---AGTA-A-T--GGA-TCAAGCTATGTTGGACTTAGAGATGCCATGATA 645
Query 758 GTTGCAGTGGATAAGTCCGAGGGAAAAACT-GTTGCT-ACTGTGAAGATCTGTTACAAGA 815
|||||||||||||||||||||| ||||| | |||| | | ||| |||||||||||||||
Sbjct 646 GTTGCAGTGGATAAGTCCGAGG-AAAAATTTGTTG-TGAAAGTGCAGATCTGTTACAAGA 703
Query 816 AGAAGACTTCATTTGTCAAAGTGCT-TGTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGT 874
||||||| ||||||||||||||| | | |||| ||||||||||||||||||| ||||| |
Sbjct 704 AGAAGACATCATTTGTCAAAGTG-TGTATGAGGCGTATGTTTGTCCAGCTTGATGGTGAT 762
Query 875 GAGGAGTCTCAGGTGAAAGAGCCAGCAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTA 934
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 763 GAGGAGTCTCAGGTGAAAGAGCCAACAGGTCTGCTTGTTGACTTCTGTATCCCACGCTTA 822
Query 935 TCTGTCAACTAA 946
||||||||||||
Sbjct 823 TCTGTCAACTAA 834
> Ahg491783 jgi|Araly1|491783|fgenesh2_kg.7__1216__AT4G29770.1
Length=1050
Score = 643 bits (348), Expect = 0.0
Identities = 667/815 (82%), Gaps = 46/815 (6%)
Strand=Plus/Plus
Query 155 TGTCATCCAGATTGCGAAAAAGCAAATAATGAGCGTGAAGATTATGATGCGTCTCAA-CA 213
|||||||||||||||| ||||||| ||||||| |||||||| ||||| |||||| |
Sbjct 92 TGTCATCCAGATTGCGTGAAAGCAAGCAATGAGCAAGAAGATTACGATGCATCTCAATC- 150
Query 214 TGCCGCTATGGTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAAGCTTGA-TG 272
||| ||| || |||||| || ||||||||||||||||||||||||| ||||||| || |
Sbjct 151 TGCAGCTTTGATAGCGGCGAGTCTGATTAGCTCTGCACGGGTTATCTTCAAGCTCGACT- 209
Query 273 CTGTGTATACTGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACAACC 332
||| |||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 210 CTGAGTATACTGAGTACTCAGCTCAGTATTTGGTGGATAACGTTGGGAAGGAAGA-AGTT 268
Query 333 -AGGGAGAAATGGATCAACAAAGCTCTCAGCT-CACTCTCCAAAACTTGCTTCAGTA-TA 389
|||||||||||||||||||||||| |||| | |||| | ||||| | |||| ||| |
Sbjct 269 GAGGGAGAAATGGATCAACAAAGCTGTCAG-TACACTGTTGAAAACCTCCTTCGGTACT- 326
Query 390 TGGATGAA-AATGTCTGGAAT-AAGAAGGAAGATGTGCAGGGAGAAAGGGAGCAACCAC- 446
||| || | || || |||| | ||||||||||||| ||||||||||| ||| |||| ||
Sbjct 327 TGG-TGGAGAACGTTTGGA-TCAAGAAGGAAGATGGGCAGGGAGAAATGGATCAACAACG 384
Query 447 ---T-----CACTGTCAAAGACTGCCTTGAATGTGCTTTCAAGTAAGGGCTACCGAGAAG 498
| |||||| ||||||||| |||||| |||||| || ||||||| || |||||
Sbjct 385 CCGTGAGTTCACTGTGAAAGACTGCTTTGAATTTGCTTTTAAAAAAGGGCTTCCAAGAAG 444
Query 499 TGAGCAGTGGGCACATGTGGGATGTC-CGTTCAAGGCTCCACCATTTGCCTGTCAGATTC 557
|| ||| ||||| ||||||||||| | ||||||||||||| |||||||| ||||| || |
Sbjct 445 TGTGCATTGGGCGCATGTGGGATG-CACGTTCAAGGCTCCCCCATTTGCTTGTCAAATAC 503
Query 558 CTCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTA-AGAGTTTGGATGAAGCGTTTAAG 616
||||||| |||||||||||||||||||||||| ||| ||| ||||| |||||| || |||
Sbjct 504 CTCGCGTTCCCATGAAAGGAGAAGTGATTGAGGCTACAGA-TTTGGGTGAAGCATTGAAG 562
Query 617 CTGT-TGATTAAACAACCGGTGGGAGCAAGACTCCATGTCTTCAGTCCAGAGCTTGATAA 675
||| | || ||||||| ||||||||||| | ||||| |||||||||||| ||||||
Sbjct 563 CTGGGT-ATGCAACAACCAGTGGGAGCAAGGTTGCATGTGTTCAGTCCAGAGTTTGATAG 621
Query 676 TGTTGGAGAGGGATTTTACGA-GGGCCTGTCTAGCCAGTCTAGTAAGGAATCACGCTATG 734
||||||||||||| ||||||| ||||| ||| || || | | |||| || ||||||
Sbjct 622 TGTTGGAGAGGGAATTTACGATGGGCC-GTC-AG---GTA-A-T--GGAA-CAAGCTATG 671
Query 735 TTGGACTTAGGGATGTAATCATAGTTGCAGTGGATAAG-TCCGAGGGAAAAACTGTTGCT 793
|||| ||||| ||||| ||||| |||| || ||| | | || ||||| ||||||||| |
Sbjct 672 TTGGCCTTAGAGATGTGATCATGGTTGAAGCGGAGAGGATCA-AGGGAGAAACTGTTG-T 729
Query 794 -ACTGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTG-CTTGTGAGCCGTA 851
|||||| |||| || |||||||||||||||||||||||||||||| || ||| |||
Sbjct 730 GACTGTGCAGATATGCTACAAGAAGAAGACTTCATTTGTCAAAGTGTCTAC-GAGAAGTA 788
Query 852 TGTTTGTCCAGCTTGGTGGTGGTGAGGAGTCTCAGGTGAAAGAGCCAGCAGGTCTGCTTG 911
|| || ||| |||| |||| || ||||||||||| | ||||||| || |||||||||
Sbjct 789 TGATTCTCCCGCTTAACGGTGACGACGAGTCTCAGGTCAGAGAGCCAACATGTCTGCTTG 848
Query 912 TTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 946
||||||||||||||||||| || ||| | ||||||
Sbjct 849 TTGACTTCTGTATCCCACGTTTCTCTATTAACTAA 883
> Ahg893725 jgi|Araly1|893725|Al_scaffold_0006_1721
Length=774
Score = 577 bits (312), Expect = 6e-164
Identities = 417/466 (89%), Gaps = 13/466 (3%)
Strand=Plus/Plus
Query 483 AAGGGCTACCGAGAAGTGAGCAGTGGGCACATGTGGGATGTCCGTTCAAGGCTCCACCAT 542
|||||||||||||||| || || |||||||||||||||||| ||||||||||||||||||
Sbjct 320 AAGGGCTACCGAGAAGAGAACATTGGGCACATGTGGGATGTACGTTCAAGGCTCCACCAT 379
Query 543 TTGCCTGTCAGATTCCTCGCGTGCCCATGAAAGGAGAAGTGATTGAGACTAAGAGTTTGG 602
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 380 TTGCTTGTCACATTCCTCGCGTGCCTATGAAAGGAGAAGTGATTGAGACTAAGAGTTTGG 439
Query 603 ATGAAGCGTTTAAGCTGTTGATTAAACAACCGGTGGGAGCAAGACTCCATGTCTTCAGTC 662
||||||| || |||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 440 ATGAAGCATTGAAGCTGTTGAAGCAACAACCGGTGGGAGCAAGACTCCATTTATTCAGTC 499
Query 663 CAGAGCTTGATAATGTTGGAGA-GGGATTTTACGAGGGCCTGTCTAGCCAGTCTAGTAAG 721
||||| ||||| ||||||||| |||| ||||||| |||| ||| | || | | | |
Sbjct 500 CAGAGATTGATCGTGTTGGAGAGGGGA-TTTACGATGGCCCGTC-A---AG-C-A--ATG 550
Query 722 GAATCACGCTATGTTGGACTTAGGGATGTAATCATAGTTGCAGTGGATAAGTCCGAGGGA 781
| |||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 551 G-ATCAAGCTATGTTGGACTTAGAGATGCCATCATAGTTGCAGTGGATAAGTCTGAGGGA 609
Query 782 AAAACTGTTGCTACTGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTGCT- 840
|| |||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 610 AAGTTTGTTGCGACGGTGAAGATCTGTTACAAGAAGAAGACTTCATTTGTCAAAGTG-TG 668
Query 841 TGTGAGCCGTATGTTTGTCCAGCTTGGTGGTGGTGAGGAGTCTCAGGTGAAAGAGCCAGC 900
| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 669 TATGAGGCGTATGTTTGTCCAGCTTGATGGTGACGAGGAGTCTCAGGTGAAAGAGCCAAC 728
Query 901 AGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 946
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AGGTCTGCTTGTTGACTTCTGTATCCCACGCTTATCTGTCAACTAA 774
Score = 416 bits (225), Expect = 1e-115
Identities = 288/319 (90%), Gaps = 2/319 (1%)
Strand=Plus/Plus
Query 104 ATGGATATGAATCAGCTATTCATGCAATCTATTGCAAACAGTCGTGGACTCTGTCATCCA 163
|||||||||||||||||||||||||||||||| ||||| | |||||| |||||||| |||
Sbjct 1 ATGGATATGAATCAGCTATTCATGCAATCTATGGCAAAGACTCGTGGCCTCTGTCACCCA 60
Query 164 GATTGCGAAAAAGCAAATAATGAGCGTGAAGATTATGATGCGTCTCAACATGCCGCTATG 223
|||||||||||||||| || ||||| |||||||| ||||| ||||||||||| ||||||
Sbjct 61 GATTGCGAAAAAGCAAGTAGTGAGCAAGAAGATTACGATGCATCTCAACATGCAGCTATG 120
Query 224 GTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCCTCAAGCTTGA-TGCTGTGTATAC 282
|||||||||||||||||||||||||||||||||||| |||| ||||| | ||| ||||||
Sbjct 121 GTAGCGGTGAATCTGATTAGCTCTGCACGGGTTATCTTCAAACTTGACT-CTGGGTATAC 179
Query 283 TGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGGGAAGGAAGACAACCAGGGAGAAAT 342
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 180 TGAGTACTCAGCTCAGTATTTGGTGGATAACGCTGGGAAGGAAGACGACCAGGGAGAAAT 239
Query 343 GGATCAACAAAGCTCTCAGCTCACTCTCCAAAACTTGCTTCAGTATATGGATGAAAATGT 402
||||||||||||||| ||||||||| || ||||| | |||||||||||||| | || ||
Sbjct 240 GGATCAACAAAGCTCGCAGCTCACTATCGAAAACCTCCTTCAGTATATGGAGGCGAACGT 299
Query 403 CTGGAATAAGAAGGAAGAT 421
||||| |||| |||||||
Sbjct 300 TTGGAACAAGAGGGAAGAT 318
> Ahg914306 jgi|Araly1|914306|Al_scaffold_0001_4560
Length=708
Score = 95.3 bits (51), Expect = 7e-19
Identities = 90/108 (83%), Gaps = 6/108 (6%)
Strand=Plus/Plus
Query 214 TGCCGCTATGGTAGCGG-TGAATCTGATTAGCTCTGCACGGGTTATC-CTCAAGCTTGAT 271
||| ||||| ||||||| |||| ||||| |||||||||||| || | || ||||| |||
Sbjct 99 TGCTGCTATCGTAGCGGCTGAA-CTGATAAGCTCTGCACGGCTT-GCACTTAAGCTGGAT 156
Query 272 -GCTGTGTATACTGAGTACTCAGCTCAGTATTTGGTGGATAATGCTGG 318
|| || | ||||||||||||||||||||||||||||| || |||||
Sbjct 157 AGC-GTCCACACTGAGTACTCAGCTCAGTATTTGGTGGACAAAGCTGG 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5