BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18090.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488674 jgi|Araly1|488674|fgenesh2_kg.6__1808__AT5G18090.1 898 0.0
Ahg350906 jgi|Araly1|350906|fgenesh1_pg.C_scaffold_6001499 503 1e-141
> Ahg488674 jgi|Araly1|488674|fgenesh2_kg.6__1808__AT5G18090.1
Length=1076
Score = 898 bits (486), Expect = 0.0
Identities = 571/612 (93%), Gaps = 5/612 (1%)
Strand=Plus/Plus
Query 10 AAAACAAATAGAAAGAGAATTAGTGAGTCATAAATCAGAGAGCGAGAGAAAAGTGGTGAG 69
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAAA-AAATAGAAAGAGAATTAGTGAGTCATAAATCAGAGAGCGAGAGAAAAGTAGTGAG 59
Query 70 ACATAGAGTGGGAGGTTAACGAAAGAGAGAACGATGAAGAACAAAGCGTTTGGTCAGATT 129
| |||||||| |||||||| |||||||||||| |||||||||| ||| ||||||||||||
Sbjct 60 AAATAGAGTGAGAGGTTAAGGAAAGAGAGAACAATGAAGAACAGAGCTTTTGGTCAGATT 119
Query 130 ATGGATGATGCAGAGAATCCCGGGTTCTTCAAGATCCTTCGA-AGTGCAGATTTATCGTC 188
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||
Sbjct 120 ATGGATGATGCAGAGAATCCAGGGTTCTTCAAGATCCTTCGACCG-GCAGATTTATCATC 178
Query 189 TGAAATCATGAGAGGGATCCCTCTAAACTTCATCAAAAGCATCTCGGAAGAAGAGTTATC 248
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 179 TGAAATCATGAGAGGGATCCCTCTAAACTTCATCAAAAGCATCTCGGACGAAGAGTTCTC 238
Query 249 GGC-TAAGATGTTGTTAAAAGTGTCATGGGGAAGTTCTTGGCCTATCAAAATTTGTAGAA 307
|| ||| ||| |||| ||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 239 -GCATAAAATGGTGTTGAAAGTGTCATGGGGAAGCTCATGGCCAATCAAAATTTGTAGAA 297
Query 308 ACCCAAGCTTCTACTTTATGGAGAAAAAGGGATGGGATCAGTTTTTGAGCGACAATGGAT 367
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 298 ACCCAAGCTTCTACTTTATGGAGAAAAAAGGATGGGATCAGTTTTTGAGCGACAATGGTT 357
Query 368 TAGGTAATGATGAGTTTCTTACCTTCACACACCAAGGAAATATGTGCTTTACCGTGGACA 427
|||||||| | ||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 358 TAGGTAATAACGAGTTTCTTACCTTCACGCACCAAGGAAATATGTGCTTTAGTGTAGACA 417
Query 428 TCTACCAAATAGACGGTAAAGAGCTACTTACACCACGCAGATCTGCAACCATTGCTTCTA 487
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 418 TCTATCAAATAGACGGTAAGGAGCTACTTACACCGCGCAGATCTGCAACCATTGCTTCTA 477
Query 488 GTTCCGGTCGGAACAAGAGAGAACAAAGGAATAACATCTACAAAGATGTGAAGGAGGAAG 547
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 478 GTTCCGGTCGGAACAAGAGAGAACAAAGGAAGAACATCTACGAAGATGTGAAGAAGGAAG 537
Query 548 AAGACATAGAGTCTTGGTCTGAATCGAGCTATCCTGGTCACAAAACAGCTGAATCTACAG 607
|||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 538 AAGAGATAGAGTCTTGGTCTGAATCGAGCTATCCTGGTCTCAAAGCAGCTGAATCCACAG 597
Query 608 GAAGAAGACAAA 619
||||||||||||
Sbjct 598 GAAGAAGACAAA 609
Score = 444 bits (240), Expect = 8e-124
Identities = 355/408 (87%), Gaps = 18/408 (4%)
Strand=Plus/Plus
Query 667 AAGAAGAAGATGAAGGTGGA-AAGTATTAGTTACGATTCTCAAGATGACAGTTTGTCTCT 725
|||||||||| |||| | || || | | || |||||||| |||| |||| | |||||||
Sbjct 621 AAGAAGAAGAAGAAGAT-GACAA-T-GT-GTAACGATTCTGAAGACGACAATGTGTCTCT 676
Query 726 TGTTCCAGAATTTACCCTCACCATAAAGAAATCATACCTCATTTTCTTGGGGATTCCAAA 785
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 677 TGTTCCAGAATTTACCCTCACCATAAAGAAATCATACCTCTTTTTCTTGGGGGTTCCGAA 736
Query 786 GATGTTTGAGGAGCTGCATATGCCAACGGAGGCAACTATGTTCAAGATCCATGATCCGGA 845
||||||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||||||
Sbjct 737 GATGTTTGAGGAGTTGCATATGCCAAGGGAAGCAACAATGTTCAAGATTCATGATCCGGA 796
Query 846 AGGGAAAAGGTCATGGGATGTTATGTATAAGTTCAG-TAATA-ACCAGACAAGATTCTGT 903
||| ||||||||||||||||||||||||||| || | | || || | |||||||||||
Sbjct 797 AGGAAAAAGGTCATGGGATGTTATGTATAAGCTC-GCTGGTACACAAT-CAAGATTCTGT 854
Query 904 GCTGGTTGGATTCGTTTGGCTAAAGAACTTGGTTTGGAGATCGGAGATGTTTGCACTTTC 963
||||| ||||||||||||||||||||||| ||| | | ||| |||||||||||||| |||
Sbjct 855 GCTGGATGGATTCGTTTGGCTAAAGAACTAGGTCTAGTGATTGGAGATGTTTGCACGTTC 914
Query 964 ACGCTCATCAAACCTACCGAGATGCTTGTTAGAGTCTCTAAATAAGAGATGATGAAGATA 1023
|| ||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 915 ACACTCATCAAACCCACCGAGATGCTTGTTAAAGTCTCCAAATAAGAGATGATGAAG-T- 972
Query 1024 TGATATTAGTTTGATAACTCTCTCAAAATCTAGTTAATGTGTTAGGAA 1071
|| | || | || ||||||||||||||||||| ||||||||||||
Sbjct 973 TG-T-TT-G----ATCACTCTCTCAAAATCTAGTTTATGTGTTAGGAA 1013
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1087 GGTCTTATTAACTTGTTACATTTGTTGTTTCTCT 1120
||| ||||||||||||||||||||||||||||||
Sbjct 1014 GGTGTTATTAACTTGTTACATTTGTTGTTTCTCT 1047
> Ahg350906 jgi|Araly1|350906|fgenesh1_pg.C_scaffold_6001499
Length=927
Score = 503 bits (272), Expect = 1e-141
Identities = 719/927 (78%), Gaps = 61/927 (7%)
Strand=Plus/Plus
Query 117 GTTTGGTCAGATTATGGATG-ATGCAGAGAATCCCGGGTTCTTCAAGATCCTTCGAAGTG 175
|||||||||| ||||||| | | | ||| ||||| | ||||||||||| |||||||| |
Sbjct 18 GTTTGGTCAGGTTATGGAAGAAAG-AGATAATCCAGCATTCTTCAAGATTCTTCGAAGGG 76
Query 176 CAGATTTATCGTCTGAAATCATGAGAGGGATCCCTCTA-AACTTCATCAA-AAGCATCTC 233
|||||| ||||||||||| |||||| ||| || | | |||| || || |||||||||
Sbjct 77 AAGATTTTTCGTCTGAAATGATGAGAATGATTCCGC-ATCACTTGAT-AAGAAGCATCTC 134
Query 234 GGAAGAAGAGTT-ATCGGCTAAGATGTTGTTAAAAGTGTCATGGGGAAGTTCTTGGCCTA 292
| | ||| || ||| ||||||| | |||| ||| |||||||||| || ||| | |
Sbjct 135 CG-ACAAGTCTTCGTCGTTTAAGATGGTCTTAAGAGTACCATGGGGAAGCTCATGG-CAA 192
Query 293 -TCAAAAT-TTGTAGAAACCCAAGCTTCT-ACTTTATGGAGAAAAAG-GGATGGGATCAG 348
| ||||| | || ||||||| || | ||| ||||| | | | || ||| | |||
Sbjct 193 GTTAAAATCTCCAAG-AACCCAA-TTTTTCACTACATGGA-AGATCGTGGTTGGAACCAG 249
Query 349 TTTTTGAGCGACAATGGATTAGG--TAATGATGAGTTTCTTACCTTCACACACCAAGG-A 405
||| ||| ||||| || || || ||| | ||||||||||| ||||| || ||| |
Sbjct 250 TTTGTGAATGACAACGGCTTGGGTTTAA--ACGAGTTTCTTACTTTCACTCA-TGAGGCA 306
Query 406 AATATGTGCTTTACCGTGGA-CATCTACCAAATAGACGGTAAAGAGCTACTTACACCACG 464
||||||||||||| || | ||| | | | ||| |||| ||| | |||| |||| |
Sbjct 307 AATATGTGCTTTAATGT-AACCATATTCGAGGCAGATGGTACGGAGATGCTTAGACCAAG 365
Query 465 -CAGATCTGCAACCATTGCTTCTAGTTCCGGTCGGAACAAGAGAGAACA-AAGGAATAAC 522
|| | || |||||||||||||||||||||||||||||||||||||| | ||| || | |
Sbjct 366 ACA-ACCTTCAACCATTGCTTCTAGTTCCGGTCGGAACAAGAGAGAAGAGAAG-AAGAGC 423
Query 523 ATCTACAAAGATGTGAAGGAGGAAGAAGACATAGAGTCTTGGTCTGAATCGAGCTATCCT 582
||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 424 ATCTACATAGATGTGAAGAAGGAAGAAGAGATAGAGTCTTGGTCTGAATCGAGCTATGCT 483
Query 583 GGTCACAAAACAGCTGAATCTACA-G-G--A-A--GAAG-ACAAA--GG--CTTAGCTTG 630
||||| |||||||||||||||||| | | | | |||| | ||| || |||| ||||
Sbjct 484 GGTCATAAAACAGCTGAATCTACAAGTGGGAGATTGAAGCAGAAACAGGAGCTTAACTTG 543
Query 631 AGTAATAAGAAAGCCAAGGAAACTGAGAAATCAAAGAAGA--A-GAAGATGAAGGTGGAA 687
|| || ||| ||||| | |||| || ||||| ||||||| | ||||| |||||||||
Sbjct 544 AGAAAGAAGGAAGCCGATAAAACCGAAAAATCCAAGAAGAGGAAGAAGAAGAAGGTGGAT 603
Query 688 AGTATTAGTTACGATTCTCAAGATGACAGTTTGTCTCTTGTTCCAGAATTTACCCTCACC 747
| | || || |||||||| ||| | || || ||||||||||||||||| | ||||||
Sbjct 604 ACTGTTTGTAACGATTCTGAAGCCGGCACTTCATCTCTTGTTCCAGAATTCAAGCTCACC 663
Query 748 ATAAAGAAATCATACCTCATT-TTCTTGGGGATTCCAAAGATGTTTGAGGAGCTGCATAT 806
|||||||||||| ||||| || ||||||||||| || |||| ||||| ||| |||||||
Sbjct 664 ATAAAGAAATCACACCTC-TTGTTCTTGGGGATCCCGAAGAAGTTTGTGGATATGCATAT 722
Query 807 GCCAACG-GAGGCAACTATGTTCAAGATCCATGATCCG-GAAGGGAA-AAGGTCATGGGA 863
||||| | ||| ||| ||||||||||| ||| ||||| || || || ||| ||||||||
Sbjct 723 GCCAA-GTGAGACAAAGATGTTCAAGATTCATCATCCGAGA-GGAAAGAAG-TCATGGGA 779
Query 864 TGTTATG-TATAAGTTCAGTAATA-ACCAGACAAGATTCTGTGCTGGTTGGATTCGTTTG 921
||| || ||| | ||| | || || | ||||||||| || ||| |||| |||||||
Sbjct 780 GGTT-TGGTATGTGGTCAATGATGTACAAT-CAAGATTCTCTGGTGGATGGAGTCGTTTG 837
Query 922 GCTAAAGAACTT-GGTTTGGAGATCGGAGATGTTTGCAC-TTTCACGCTCATCAAACCTA 979
|| ||||| || ||||| | | |||||||||||||||| ||| | |||||||||||| |
Sbjct 838 GCCAAAGAG-TTAGGTTTAGTGGTCGGAGATGTTTGCACGTTTGA-GCTCATCAAACCGA 895
Query 980 CCGAGATGCT-TGTTAGAGTCTCTAAA 1005
|||||||| | ||| | |||||| |||
Sbjct 896 CCGAGATG-TGTGTCAAAGTCTCCAAA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5