BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18100.1
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326224 jgi|Araly1|326224|fgenesh1_pm.C_scaffold_6001444 782 0.0
> Ahg326224 jgi|Araly1|326224|fgenesh1_pm.C_scaffold_6001444
Length=495
Score = 782 bits (423), Expect = 0.0
Identities = 472/496 (95%), Gaps = 2/496 (0%)
Strand=Plus/Plus
Query 35 ATGGAAGCTCCTAGAGGAAATCTGAGAGCGGTGGCTCTTATCGCCGGCGATAACAACGTC 94
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGAAGCTCCTAGAGGCAATCTGAGAGCGGTGGCTCTTATCGCCGGCGATAACCACGTC 60
Query 95 CGAGGCTGTCTTCAATTCGTACAAGACA-TTTCCGGAACTACTCATGTCACCGGGAAGAT 153
|| || |||||||||||||||||||||| ||| ||| || |||||||| |||||||||||
Sbjct 61 CGGGGATGTCTTCAATTCGTACAAGACACTTT-CGGGACCACTCATGTTACCGGGAAGAT 119
Query 154 CTCAGGACTCTCTCCTGGCTTCCATGGATTTCATATTCACTCTTTTGGTGATACCACAAA 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCAGGACTCTCTCCTGGCTTCCATGGATTTCATATTCACTCTTTTGGTGATACCACAAA 179
Query 214 TGGCTGCATCTCTACTGGACCTCACTTCAATCCATTAAATCGAGTTCACGGGCCACCGAA 273
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGGCTGCAACTCTACTGGACCTCACTTCAATCCATTAAATCGAGTTCACGGGCCACCGAA 239
Query 274 CGAGGAAGAGCGTCATGCTGGCGATTTGGGTAACATTCTTGCAGGATCAAACGGTGTTGC 333
||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 240 TGAGGAAGAGCGTCATGCAGGCGATTTGGGTAACATTCTTGCAGGATCAGATGGTGTTGC 299
Query 334 TGAAATCTTAATCAAAGACAAACATATACCGCTTAGTGGGCAGTATTCCATACTCGGGAG 393
|||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 300 TGAAATCTCAATCAAAGACAAACAGATACCACTTAGTGGGCAGTATTCTATACTGGGGAG 359
Query 394 GGCGGTTGTTGTGCATGCGGATCCTGATGACCTTGGGAAAGGAGGGCACAAGCTTAGCAA 453
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGCGGTTGTTGTGCATGCTGATCCTGATGACCTTGGGAAAGGAGGGCACAAGCTTAGCAA 419
Query 454 ATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGGTATCATCGGACTTCAATCATCTGC 513
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 ATCAACGGGAAACGCAGGCTCGAGAGTTGGATGCGGTATCATCGGACTTCAATCATCTGC 479
Query 514 GGATGCTAAACTATAG 529
||||||||||| |||
Sbjct 480 AGATGCTAAACTGTAG 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26037952311
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5