BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18110.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488676 jgi|Araly1|488676|fgenesh2_kg.6__1810__AT5G18110.1 1522 0.0
> Ahg488676 jgi|Araly1|488676|fgenesh2_kg.6__1810__AT5G18110.1
Length=1079
Score = 1522 bits (824), Expect = 0.0
Identities = 1019/1108 (92%), Gaps = 34/1108 (3%)
Strand=Plus/Plus
Query 8 ttcttctctcctcctctttcttcttcCTGATTGGAATTTTAGGGCTTTTGAAAGCACGAA 67
||||||||| |||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1 TTCTTCTCTTCTCCTCTTTCTTCTTCCTGATTAGATTTTTAGGGCTTTTG-AAGCACGAA 59
Query 68 CGCGTGAAGCTCTAATCGAGaaaaaaaTGGAGGTTTTGGATAGGAGAGACGATGAGATCA 127
||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 60 CGCGTTAAGCTCTAATCGAGAAAAAAATGGAGGTTGCGGATAGGAGAGACGAGGAGATCA 119
Query 128 GGGACTCGGGAAACATGGACAGCATCAAGTCACACTATGTTACCGACTCTGTTTCCGAGG 187
||||||| ||||||||||||| |||| |||| |||||||| ||||||||||||||||| |
Sbjct 120 GGGACTCTGGAAACATGGACATCATCGAGTCGCACTATGTCACCGACTCTGTTTCCGAAG 179
Query 188 AACGCCGCTCTCGTGAGCTCAAGGATGGAGACCATCCTTTACGGTACAAGTTTTCGATAT 247
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 180 AACGTCGCTCTCGTGAGCTCAAGGATGGTCTCCATCCTCTACGGTACAAGTTTTCGATAT 239
Query 248 GGTACACTCGTCGCACACCAGGGGTTCGGAACCAGTCTTATGAAGATAACATCAAGAAGA 307
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 240 GGTACACTCGTCGCACACCAGGGGTTCGGAACCAATCTTATGAGGATAACATTAAGAAGA 299
Query 308 TGGTAGAATTCAGCACGGTTGAAGGATTTTGGGCCTGCTACTGTCACCTTGCTCGTTCTT 367
|||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 300 TGGTGGAATTCAGCACTGTTGAAGGGTTTTGGGCCTGCTACTGTCACCTTGCACGTTCTT 359
Query 368 CTCTCTTGCCTAGTCCAACAGATCTTCATTTCTTTAAGGATGGGATTCGTCCATTGTGGG 427
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CTCTCTTGCCTAGTCCAACAGATCTTCATTTCTTTAAGGATGGGATTCGTCCGTTGTGGG 419
Query 428 AGGAT-GGTGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCT 486
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGG-TAGGCGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCT 478
Query 487 GCTCGCTTCTGGGAGGATCTGCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGAT 546
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 479 GCTCGCTTCTGGGAGGATCTGCTTCTTGCATTGGTAGGCGACCAGCTTGACGACGCTGAT 538
Query 547 AACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAAT 606
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 539 AACATATGTGGGGCAGTACTGAGTGTCCGCTTCAATGAGGACATCATTAGTGTATGGAAT 598
Query 607 CGCAATGCTTCTGACCATCAGGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CGCAATGCTTCTGACCATCAGGCAGTGATGGGTTTGAGAGACTCAATCAAGCGGCATTTG 658
Query 667 AAGTTGCCTCATGCATATGTCATGGAATACAAGCCACACGATGCTTCTCTCCGCGACAAC 726
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 AAGTTGCCCCATGCATATGTCATGGAATACAAGCCCCACGATGCTTCTCTCCGCGACAAC 718
Query 727 TCTTCCTACAGAAACACATGGCTGAGAGGATAGGCCCAAAGTCGATGATTGTATCATGTA 786
||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||
Sbjct 719 TCTTCCTACAGAAACACATGGCTGAGAGGATAGGCTCAAAGTGGACGATTGCATCATGTA 778
Query 787 ATGTGGAGAAGATTTGGGAAGCTCATCTGCAACCTGGGAAGATATCTGGATTGAACCCTG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGTGGAGAAGATTTGGGAAGCTCATCTGCAACCTGGGAAGATATCTGGATTGAACCCTG 838
Query 847 TATCCAATACCATACTGTACCGGAGGCTTACAATATCAGAAAAAA----CAAAATCCGGG 902
|||||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||
Sbjct 839 TATCCAATACCATACTGTACCGAAGGCTTACAATACCAGAAAAAAAAAACAAAATCCCGG 898
Query 903 CTACTTCTGTGTCAGTATGTGTTCATTTCGTTTTTCTTTTACAGTACATCTTGTTAACTT 962
| | ||||||||||||||||| | | | | ||||||||| || |||
Sbjct 899 CAAATTCTGTGTCAGTATGTG--C-T--C-----------A---TACATCTTGCTACCTT 939
Query 963 CAATGGTTTGACTCTTGATCAAAACTATAAGGATGTATTTTCAATGAAAACTGGAAATTA 1022
||||||||||||||||| |||||||| | | | | || |||||||||||||| ||||
Sbjct 940 CAATGGTTTGACTCTTGTTCAAAACT-TCA---T-T-TT--CAATGAAAACTGGAGATTA 991
Query 1023 CGTTCTGGTTTACATTATAACTCATGTCTTAAAAAGTAACAGGATGTCAATATACAATGT 1082
||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
Sbjct 992 CGTACTGGTTTACATTATGACTCGTGTCTTAAACAGTAACAGGATGTCAATATACAATTT 1051
Query 1083 CACTTCGTACGATGATCTCTAATGTACA 1110
|||||||||| ||| |||||||||||||
Sbjct 1052 CACTTCGTACTATGGTCTCTAATGTACA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5