BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18120.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941333 jgi|Araly1|941333|scaffold_601877.1 1389 0.0
> Ahg941333 jgi|Araly1|941333|scaffold_601877.1
Length=919
Score = 1389 bits (752), Expect = 0.0
Identities = 865/920 (94%), Gaps = 5/920 (1%)
Strand=Plus/Plus
Query 406 CCGTAGATTTAGGATCCTTAATTAATGAATTTGTGGGT-T--TCAATATTCCTCGTCTCT 462
||||||||||||| | || ||||||||||||||||| | || ||| ||||| | |||
Sbjct 1 CCGTAGATTTAGGTTTCTGGTTTAATGAATTTGTGGGTCTCCTCCATAATCCTCTTATCT 60
Query 463 GCAATAGCTGGATCATGCTTACCTTCTGGGTTTGCTTACGTTGACGTTTGCAATCACGAA 522
|| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 61 GCGATAGCTGGATCATGCTTACCTTGTGGGTTAGCTTACGTTGACGTTTGCAATCACGAT 120
Query 523 TTCGAGGTGTTCCGATCCGTGATCGAGCAAAAATGTCCTCGTTCTT-TGTATCCAAGCCC 581
||||||||||| |||| || ||||||||||| ||||||||||| || | ||||| |||||
Sbjct 121 TTCGAGGTGTTTCGATGCGAGATCGAGCAAATATGTCCTCGTT-TTCTCTATCCGAGCCC 179
Query 582 TCCTATCGAGGTAGATGGAGACTTGCTAGACAAACTCATGGATGCAAACCATGGAAATGC 641
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TCCTATCGAGGTAGATGGAGACTTGCTAGACAAACTCATGGATGCAAACAATGGAAATGC 239
Query 642 CTATATATCCATACTATTTTATACCTCACGGTGCCCGTTTTCACGTGCAGTACGCCCAAA 701
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 TTATACATCCATACTATTTTATGCCTCACGGTGCCCGTTTTCACGTGCAGTACGCCCAAA 299
Query 702 GTTTGATGTTCTGAGTTCAATGTTTCCTCACATAACGCACCTGATTGTTGAGCAATCTCA 761
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 GTTTGATGTTCTGAGTTCAATGTTTCCTCACATAAGGCACCTGATTGTTGAGCAATCTCA 359
Query 762 GGCTTTACCATCTGTGTTTTCTAGGTATGGTATCCATAGCTTGCCTTCAATCCTGATGGT 821
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGCTTTACCATCTGTCTTTTCTAGGTATGGTATCCATAGCTTGCCTTCAATCCTGATGGT 419
Query 822 GAATCAAACAATGAAGATGCGATACCATGGTCCAAAGGATCTTGCATCCCTGATTCAGTT 881
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 420 GAATCAAACAATGAAGATGCGATACCATGGTCAAAAGGATCTTGCATCCCTTATCCAGTT 479
Query 882 TTACAAGGAAACAACAGGTCTTAAACCTGTCCAGTATATGGATGAAGGTGAACCAACAAG 941
|||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||
Sbjct 480 TTACAAGGAAACAACAGGTCTTAAACCTGTTCAGTATGTGGATGATGTTGAACCAACAAG 539
Query 942 CTTGGACACTGATGGAAACCTGATCACATGGCTACACAACGGGTCATCTATCAGAGAAAT 1001
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 540 CTTGGACACTGATGGTAACCTGATCACATGGCTACACAACGGGTCATCTATCAGAGAAGT 599
Query 1002 AGCAGAAAGAGAGCCATATATGGTACTTGCACTAATGTTTCTGTCTTTGAAACTGGCAAT 1061
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 600 AGCAGAAAGAGAGCCATATATGGTACTTGCGTTGATGTTTCTGTCTTTGAAACTGGCAAT 659
Query 1062 TTTGATCTTCCCCATCATGGGATCACGGTTGAAAACGTTATGGGCATTGTATGTTCCGCA 1121
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TTTGATCTTCCCCATCATGGGATCACGCTTGAAAACGTTATGGGCATTGTATGTTCCGCA 719
Query 1122 TCTGAGCTTGGGAATACTTGGTGAGACTAGCCAACTGTTTGGCCGTGCCCTACACATGAT 1181
||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||
Sbjct 720 TCTGAGCTTGGCTATACTCGGTGAGACAAGCCAACTCTTTGGCCGTGCCCTGCACATGAT 779
Query 1182 CGATGTGAGGAGACTATGGATAAAACTGAGACTCACCAAAACAAGGAACTTCCAAGAAAG 1241
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGATGTGAGGAGACTATGGATGAAACTGAGACTCACCAAAACAAGGAACTTCCAAGAAAG 839
Query 1242 AGCAAAGAACGCACTTGCATCAGTCTCACTAGGAAAATCTTCATCACAATCAGCCTAAAA 1301
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 840 GGCAAAGAACGCACTTGCATCGGTCTCGCTAGGAAAATCTTCATCACAATCAGCCTAAAA 899
Query 1302 GGGTGATTTAGAAATCCTTC 1321
|||||||| |||||| ||||
Sbjct 900 GGGTGATTCAGAAATACTTC 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5