BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18130.1
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488679 jgi|Araly1|488679|fgenesh2_kg.6__1813__AT5G18130.1 1633 0.0
> Ahg488679 jgi|Araly1|488679|fgenesh2_kg.6__1813__AT5G18130.1
Length=1100
Score = 1633 bits (884), Expect = 0.0
Identities = 1034/1103 (94%), Gaps = 24/1103 (2%)
Strand=Plus/Plus
Query 1 AGAGAAACCACTTCGCAACGATGAGGGAGATAGGTCACTCCTCAAAATTACCAAACACAA 60
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 1 AGAGAAACCACTTCGAAACGATGAGAGAGATAGGTCTCTCCTCAAAATTACCAAACAC-A 59
Query 61 ATTAGCTCCAATAATTGCAACAAATCACTCTCACCCAAACAAAACTTTTCAAAAGCCCTA 120
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 ATTAGCTCCAATAACTGAAACAAATCACTCTCACCCAAACAAAACTTTTCAAAAACCCTA 119
Query 121 ATCCGAGAAATCATTCGACAACAACACGAAGGAGATGGATCTAGAAGATTGGGAAATACT 180
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 ATCCGAGAAATCAATCAACAACAACTCGAAGGAGATGGATCTAGAAGATTGGGAAATACT 179
Query 181 CCCCA-AAATCAACTACAAGGGTCTCGAACTTGATCTCGGTCATGAAGAGGATCATGAAG 239
||||| ||| || ||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 180 CCCCAGAAA-CATCTACAAGGGTCTCGATCTTGATCTCGGTCATGACGAGGATCATGAAG 238
Query 240 TTACGAAGATGATGAGAAACACCGCAAAAAGCTTCGACAGTGATTACTTCATCTGCCCAA 299
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 239 CTACGAAGATGATGAGAAACACCGGAAAAAGCTTCGACAGTGATTACTTCATCTGCCCAA 298
Query 300 TTCAAGATTCTGTCGGAAAGACAGAGTTTCTTCATCAGAGATCTAGCGTGGTCCCCACAC 359
||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 299 TTCAAGATTCTGTCGGAAAAACAGAGCTTCTTCATCATAGATCTAGCGTGGTCCCCACAC 358
Query 360 AACTCCTCCAGATTCCAATAACTTGGGAACCTTTGTCCCCCGTGGACG---ACAAAGATC 416
|||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 359 AACTCCTCCAAATTCCCATAACTTGGGAACCTTTATCCCCCGTGGACGACAACAAAGATC 418
Query 417 ACAATAAGTACCTGGATCCGGATTTCTCGGAACCAGACCCGGAACTTTTGACGGAGTCTT 476
|||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 ACAAGAAGTACCCGGATCCGGATTTCTCGGAACCAGACCCGGAACTGTTGACGGAGTCTC 478
Query 477 TTCCGTCGCCGAGAATAACCTTCAAGAAATCGAAGGAAACCGAATTTGCCGACATGAAAA 536
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 479 TTCCGTCGCCGAGAATAACCTTCAAGAAAACGAAGGAAACCGAATTTGCCGACATGAAAA 538
Query 537 TAGATTCACCAGCAGCGAGGTTCACTAGTCCTCTGCCGCAGAACGATGAGAGACACTCTG 596
|||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||
Sbjct 539 TAGATTCACCAGCAGCGAGGCTCACGAGTCCTCTGCCTCAGAACGATGAGAAACACTCTG 598
Query 597 ACTCAGAAGGAGGGTTAGGAGGAGAGTCTTATGATGAGATCATGGGATCAGAGGTTGAAG 656
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 ACTCAGAAGGAGGGTTAGGAGGAGAGTCCTATGATGAGATCATGGGATCAGAGGTTGAAG 658
Query 657 AAAGCAGTGACTTGAGTAGCAAGAAAGAGGTTGATTGGGATGAAGGTGAAAGAACGAATC 716
|| | ||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 659 AAGGTAGTGACTTGAGGAGCAAGAAAGAGGTTGATTGGGATGAAGGTGAAAAAATGAATC 718
Query 717 TGTGGAAGAAGGGTCTTAATGGAATTGGAGCTATATGTTCATTTGGTGTTGCAGCTGCTG 776
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTGGAAAAAAGGTCTTAATGGAATTGGAGCTATATGTTCATTTGGTGTTGCAGCTGCTG 778
Query 777 CAGCCACCATATGTGTCTTCTTCCTTGGACACAACAGTAGCATCCAAGGTGGTCGGAACA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAGCCACCATATGTGTCTTCTTCCTTGGACACAACAGTAGCATCCAAGGTGGTCGGAACA 838
Query 837 AGAACCAGATCCTCAGGTTCCAGATTTACTCTGATGATAATAAGCGGATGAACGAGGTAG 896
||||||| ||| | ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 839 AGAACCAAATCTTAAGGTTTCAGATTTACTCTGATGATAATAAGCGAATGAACGAGGTAG 898
Query 897 TGAAACATGCAACAAAGCTAAATGAAGCAATCTCTGTGATGAAAGGTCTTCCGGTGGCAA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGAAACATGCAACAAAGCTAAATGAAGCAATCTCTGTGATGAAAGGTCTTCCGGTGGCAA 958
Query 957 GAGCTCAAATATCTTTTGGAGGATACTACGATGCACTTTGAATCATAGCCATA--T-A-- 1011
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 959 GAGCTCAAATATCTTTTGGAGGATACTACGATGCACTTTGAAACATAGCCATAACTGAAT 1018
Query 1012 --GC-CAT-AGATCCAATGTCTTCTGCTTAATCGCC--TC--T---ATAGCTTATGTATT 1060
|| ||| |||||||||||||||||||||||| || | | ||||||||||||||
Sbjct 1019 CAGCACATCAGATCCAATGTCTTCTGCTTAATCACCAATGGGTTTTATAGCTTATGTATT 1078
Query 1061 TACGAATTTAGGAA-ATTCAATA 1082
||||||||||| || ||||||||
Sbjct 1079 TACGAATTTAG-AATATTCAATA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49750406685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5