BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18140.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488680 jgi|Araly1|488680|fgenesh2_kg.6__1814__AT5G18140.1 1515 0.0
Ahg911641 jgi|Araly1|911641|Al_scaffold_0001_1895 263 2e-69
> Ahg488680 jgi|Araly1|488680|fgenesh2_kg.6__1814__AT5G18140.1
Length=1185
Score = 1515 bits (820), Expect = 0.0
Identities = 1088/1209 (90%), Gaps = 51/1209 (4%)
Strand=Plus/Plus
Query 1 ACCACTTAACGTCAGTGGTCCGTTTGACAAACAGACCTGTGACTGTGAGTGAAGAAGATA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1 ACCACTTAACGTCAGTGGTCCGTTTGACAGACAGACCTGTGACTGTGAGTGGAGAAGATA 60
Query 61 ATGCAGACTCACCTTTTGGTGGGACCTATCCCACTCAAAGGCTACCGTCGATTCTCTTCC 120
|||||||||||||||||||||||||| ||||||||||| || | ||||||| | || ||
Sbjct 61 ATGCAGACTCACCTTTTGGTGGGACCCATCCCACTCAAGGGTTGCCGTCGA-T-TC-TCA 117
Query 121 TCCTCCTTCTCCGGCGATCTCCTCCCTCCGTCGTCTAACCCTATCGGCCGAGACCTA-TT 179
||||||||||||||||||||||||||||| || ||||| ||| ||||| |||| |||
Sbjct 118 TCCTCCTTCTCCGGCGATCTCCTCCCTCCATCTTCTAATCCTTTCGGCGGAGATCTACAA 177
Query 180 C-CC-TCACCGTCGAAGGCACCGCGACGGCAAATCTCGGAGTTACCGTAATCGCTCGAAA 237
| || ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 178 CACCACCACCGTCGAAGGCACCGCGACGGCAGATCCCGGAGTCACCGTAATCGCTCGAAA 237
Query 238 ACGACGATTACTAGTGCTGCG-----TT--T--TCTTC--AAG-TTCTAATACCGGCGGG 285
|||||| ||||| ||| ||| || | ||||| | |||||||||||| |||
Sbjct 238 ACGACGGTTACTTCTGCGGCGTATTCTTCGTCGTCTTCTTCGGCTTCTAATACCGGTGGG 297
Query 286 CAGAATCATTACGCTGTTTTGGGCATCGCTCGAAACGCCACACAAGGTGACATCAAGAGA 345
||||| ||||| | ||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 298 CAGAACCATTATGTTGTTTTGGGTGTCGCTCGCAACGCCACACAAGTTGACATCAAGAGA 357
Query 346 GCTTATCGTTTGCTAGCTCGAAAGTTTCATCCTGATGTTAATAAGGACTCTAAAGCCGGA 405
|||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 358 GCTTATCGCCTGCTCGCTCGAAAGTTTCATCCTGATGTCAATAAGGACTCTAGAGCCGGA 417
Query 406 GAGCTATTCAAGAGTGTCCGTTGTTCCTACGAAGTACTATCTAATGAAGCTACAAGGACT 465
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAGCTATTCAAGAGTGTGCGTTGTTCCTACGAAGTACTATCTAATGAAGCTACAAGGACT 477
Query 466 CAGTACGACAGAGCACTTAAACTTCAAGAAAATTCCCGGTTCCATAGAGTGAAAAGGCAC 525
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CAGTACGACCGAGCACTTAAACTTCAAGAAAATTCCCGGTTCCATAGAGTGAAAAGGCAC 537
Query 526 AGCTACACCCCTGAGGTTGAAGATGCCATGAAGTATTACTACACCTGGTCTGAGAAAAGA 585
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 AACTACACCCCTGAGGTTGAAGATGCCATGAAGTATTACTACAGCTGGTCTGAGAAAAGA 597
Query 586 CAAAGATCCAGACACGGGAGATTCTATGGACACTATTCTACATATCCAAACTCACATTTC 645
|| |||| | | ||| | | | |||||||||||||||||||||||||||
Sbjct 598 CACAGAT-----C-C---AGA--C-----A-A-TATTCTACATATCCAAACTCACATTTC 639
Query 646 TACGCTGAGACCGAGCCGCAAGAAGAAGAAGGAGTAGAAACAGCACCAGACCAGCGAGAC 705
|| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 640 TATGCTGAGACTGAGCCGCAAGAAGAAGAAGAAGTAGAAACAGCACAAGACCAGCGAGAC 699
Query 706 TCATTTGTTGAAGCTCTCAAATCCGCCTTCTTATCGATGTTTCTTCTATATACATTCGGT 765
|| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TCCTTTGTCAAAGCTCTCAGATCCGCCTTCTTATCGATGTTTCTTCTATATACATTCGGT 759
Query 766 TGCCTAGCATCTCTCACATTTAGCACATTCACAGCGTTGCTCGACAAGGAACTCGACATG 825
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 760 TGCCTAGCATCTCTCACATTTAGCACATTCACAGCTTTGCTTGACAAGGAACTCGACATG 819
Query 826 GGTTACAAAGTCGGATTCATGATCGCTTGGATACTTGGCGGAAAAGGCGGTATCCTTCTT 885
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 820 GGTTACAAAGTCGGATTCATGATCGCTTGGATACTAGGCGGAAAAGGCGGCATCCTTCTC 879
Query 886 ACTCTCTGCTTAACATTTGCAAGCTGGCTCTGTGGGAAAGCAAGCAGCAGCGTGGTGGTT 945
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 ACTCTCTGCCTAACATTTGCAAGCTGGCTCTGTGGGAAAGCAAGCAGCAGCGTGGTGGTT 939
Query 946 CTTGTGTTAGTAGCAATGTGGGTTGGCTCTAATTTAGCTAGACATGCTCCTCTTCCACAA 1005
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 940 CTTGTGGTAGTGGCAATGTGGGTTGGCTCGAATTTAGCTAGACATGCTCCTCTTCCACAA 999
Query 1006 GGTGCTCTTCTCACCCTCCTCTACATGTCAATCAAACTTCAAGTCGACTCAACCTGAATC 1065
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1000 GGAGCTCTTCTCACCCTCCTCTACATGTCAATCAAGCTTCAAGTTGACTCAACCTGAATC 1059
Query 1066 TTCTG-T--AAGTTTCCACTACGTTTTAGATTGTAAATAGCTA-AGTTACATTATT-TGT 1120
|||| | || |||||||||||||| || ||||||||||||| | ||||||| || | |
Sbjct 1060 TTCTTCTCTAAATTTCCACTACGTTT-AGGTTGTAAATAGCTAGA-TTACATTGTTCTCT 1117
Query 1121 AT-C---C-TATGATTTGGGTCTTGGAGAAAAAT-GAT-TAGTAGTAAAGAGAAGAAATT 1173
|| | | |||||||||| |||||||||||| | || |||||||||||||||||||||
Sbjct 1118 ATTCTGTCCTATGATTTGGATCTTGGAGAAAA-TCGAAATAGTAGTAAAGAGAAGAAATT 1176
Query 1174 GCTTGAAGG 1182
|||||||||
Sbjct 1177 GCTTGAAGG 1185
> Ahg911641 jgi|Araly1|911641|Al_scaffold_0001_1895
Length=309
Score = 263 bits (142), Expect = 2e-69
Identities = 156/163 (96%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 900 ATTTGCAAGCTGGCTCTGTGGGAAAGCAAGCAGCAGCGTGGTGGTTCTTGTGTTAGTAGC 959
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 147 ATTTGCAAGCTGGCTCTGTGGAAAAGCAAGCAGCAGCGTGGTGGTTCTTGTGGTAGTGGC 206
Query 960 AATGTGGGTTGGCTCTAATTTAGCTAGACATGCTCCTCTTCCACAAGGTGCTCTTCTCAC 1019
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 207 AATGTGGGTTGGCTCCAATTTAGCTAGACATGCTCCTCTTCCACAAGGAGCTCTTCTCAC 266
Query 1020 CCTCCTCTACATGTCAATCAAACTTCAAGTCGACTCAACCTGA 1062
||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 267 CCTCCTCTACATGTCAATCAAGCTTCAAGTTGACTCAACCTGA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5