BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18150.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326229 jgi|Araly1|326229|fgenesh1_pm.C_scaffold_6001449           399    3e-111
  Ahg325929 jgi|Araly1|325929|fgenesh1_pm.C_scaffold_6001149           100    4e-21 


> Ahg326229 jgi|Araly1|326229|fgenesh1_pm.C_scaffold_6001449
Length=231

 Score =  399 bits (216),  Expect = 3e-111
 Identities = 226/231 (98%), Gaps = 0/231 (0%)
 Strand=Plus/Plus

Query  1    ATGTGTCCGATGAGGTTCTTATTGGTGTTCTTCTCAGCTGTACTCGCCGGATATTTCGCA  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGTGTCCGATGAGGTTCTTATTGGTTTTCTTCTCAGCTGTACTCGCCGGATATTTCGCA  60

Query  61   TGGAAGACGGTGAGTTCTTCGCCGGAATTCGATTCACCGGACGAATTGAATGAGAAACAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TGGAAGACGGTGAGTTCTTCGCCGGAATTCGATTCACCGGACGAATTGAATGAGAAACAA  120

Query  121  GAACTCAATCTCAAAAAGAAGATGGAGAATGGGTTTTGGGTGTTCGTCGATATGGCTAGC  180
            ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  GAACTCAATCTCAAAAAGAGGATGGAGAATGGGTTCTGGGTGTTCGTCGATATGGCTAGC  180

Query  181  GGAAGATACCTTTGGAGGAATCTCAAGGAAATGAGAGAGAAATCTCAATGA  231
            ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct  181  GGAAGATACCTTTGGAGGAATCTTAAGGAAATGAGAGAGAAAACTCAATGA  231


> Ahg325929 jgi|Araly1|325929|fgenesh1_pm.C_scaffold_6001149
Length=1128

 Score =  100 bits (54),  Expect = 4e-21
 Identities = 82/95 (86%), Gaps = 4/95 (4%)
 Strand=Plus/Plus

Query  139   AAGATGGA-GAATGGGTTTTGGGTGTTCGTCGATATGGCTAGCGGAAGATACCTTTGGAG  197
             |||||||| | ||||||| |||  |||||| |||||||||||||||||||||||||||||
Sbjct  1036  AAGATGGATG-ATGGGTTATGGACGTTCGTTGATATGGCTAGCGGAAGATACCTTTGGAG  1094

Query  198   GAATCTCAAGGAAATGAGAGAGAA-ATCTCAATGA  231
              ||||||||||| ||| | ||||| |  |||||||
Sbjct  1095  AAATCTCAAGGAGATGCGTGAGAATAG-TCAATGA  1128



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5