BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18160.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941337 jgi|Araly1|941337|scaffold_601881.1 1415 0.0
Ahg488665 jgi|Araly1|488665|fgenesh2_kg.6__1799__AT5G18160.1 1415 0.0
> Ahg941337 jgi|Araly1|941337|scaffold_601881.1
Length=1222
Score = 1415 bits (766), Expect = 0.0
Identities = 1019/1136 (90%), Gaps = 37/1136 (3%)
Strand=Plus/Plus
Query 31 ACAACAAAATCTTCATCTACATTGACGACAAG---ATGCTCACATGGTAATCACATATCT 87
|||| | |||||||||||||||||| ||||| || ||||||||||||||||| ||||
Sbjct 78 ACAAGACAATCTTCATCTACATTGAAAACAAGACAATCCTCACATGGTAATCACAAATCT 137
Query 88 CAGTCAAACTCGATTCCTCTCGACATAACCATTGAGATACTCTCAAGACTTCCTGCGAAA 147
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 138 CAGTCAAACTCGATTCCTTTCGACATAACCTTTGAGATACTCTCAAGACTTCCTGCCAAA 197
Query 148 TCAATCGTCAGATCTCGCTCCGTCTCTAAGCTCTGGTCGTCCATTACCACCACACCAGAG 207
|||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 198 TCAATCGTGAGATATCGCTCCGTCTCTAAGCTCTGGTCGTTCATTACCACCACACCAGAG 257
Query 208 TTCATCAAGCA-TCGGTCCAAGAAGACATCACCACCTTGTGTTCTACTAATCTTCCGAAA 266
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 258 TTCATCAAG-ACTCGGTCCAAGAAGACATCACCACCGTGTGTTCTACTAATCTTCCGAAA 316
Query 267 ACACGACAAGCTGATCGTTTTCTCGTCTCCC-CAACACCAGAATACTTATTCTCATGTGC 325
||||||||||||||| || |||||||| ||| |||||| |||||||||||||| |||||
Sbjct 317 ACACGACAAGCTGATTGTGTTCTCGTC-CCCGCAACACAAGAATACTTATTCTTATGTGG 375
Query 326 AAGATTATCACATTGAAATCCCCAAGAATGGTTTCATCCGTCGTCTTGATTCCGTCCACG 385
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 376 AAGATTATCACATCGAAATCCCCAAGAATGGTTTCATCCGTCGTCTTGATTCCGTTCACG 435
Query 386 GTTTGATCTGCTTAGAAGGTTCTAAACAGCTCGTGATTTGTAACCCTACTTTGAAACGAT 445
| ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 436 GGTTGATTTGCTTTGAAGGTTCTAAACAGCTCGTGATTTGGAACCCTACCATGAAACGAT 495
Query 446 TCTTCCCTTTACCTGAGCCTCAAGGCACCGGTGACGAATACAACGTAGGAGGGTTTCTGG 505
|||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||
Sbjct 496 TCTTTACTTTACCTGAGCCTCAAGGCAACGGAGACGAATACTACGTAGGAGGGTTTTTGG 555
Query 506 GATATGAACCGATAGAGGGTAAATACAAAGCATTGTGCATTGTCAGAGGATGGAACACTC 565
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GATATGAACCGGTTGAGGGTAAATACAAAGCATTGTGCATTGTCAGAGGATGGAACACTC 615
Query 566 AAGTTCTTACATTGGAAATTCAAGAATCATGGAGAGTA--A-CCAAACCTGGCTATA-CA 621
||||||||||||||| | |||||||||||||||||||| | ||||| ||||| | |
Sbjct 616 AAGTTCTTACATTGGGAGTTCAAGAATCATGGAGAGTAGTAACCAAAGGTGGCTTTTTC- 674
Query 622 CATTGGCCTACTAAAGATACTGGACGATGCATTAATGGAGTTATCTACTATAAAGCTATT 681
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 675 CATTGGCCTACTAAAGACACTGGACGATGCATTAATGGAGTAATCTACTATAAAGCG-TT 733
Query 682 ATATTTGATAGGGTTCCAAGGCATGTTATATTTGGCTTTGATCTCAGATATGAAGAGTTT 741
| |||| || ||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 734 -T----GATATGGCTCCAAGGCATGCTATAATTAGCTTTGATCTCAGATATGAAGAGTTT 788
Query 742 ACACAT-ATTGAGTTTCCGATGCGTAATTATGACCGCTTTCTTATGGTATCTTATGAGGG 800
| || | ||||| |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 789 AAAC-TGATTGATTTTCCGATGCGTGATTATGACCGCTTTCTTATGGTCTCTTATGAGGG 847
Query 801 AAGGTTGGCTTTGATAAGTTCCACTAGCTCTGTTGTTGAAATCTGGAGTTTGGAGGATGC 860
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 848 AAGGTTGGCTTTGATAAGTGACACTAGCTCTGTTGTTGAAATATGGAGTTTGGAGGATGC 907
Query 861 AGGGAATCGAAAA-TGGTCGTATGAACAGTTTCATTTATGTCTTCCTCCCAACA-----C 914
||||||| |||| |||||||||| ||||||||||||| |||||||||| |||| |
Sbjct 908 AGGGAATA-AAAAGTGGTCGTATGGACAGTTTCATTTAAGTCTTCCTCCTAACAAATATC 966
Query 915 --AAGTC-T-G-A----AGGG-TGTTATTGATGCTGGTGAGCTTATTTACACAGGATTTA 964
|||| | | | |||| ||||| ||||| ||||||||||||||| |||||| | |
Sbjct 967 TGAAGTGGTTGGATCTTAGGGGTGTTACTGATGGTGGTGAGCTTATTTATACAGGAGTGA 1026
Query 965 GTTTGAATAGATCGTTCTGTGTTGTGTATTTTGATCCTAAGAAAAACAATATCAGAGAAA 1024
|||||||| ||||||||||||||||||||||||| || ||||||| || ||| ||||| |
Sbjct 1027 GTTTGAATGGATCGTTCTGTGTTGTGTATTTTGACCCGAAGAAAAGCAGTATAAGAGAGA 1086
Query 1025 CCAAGTTTCAAGGAATTGCGGATAACCAGATTTGGCAACCTGATAGACTTGGATTTGATC 1084
| ||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1087 CTAAGTTTCGAGGAATTACGGGTAACGAGATTTGGCAACCTGATAGACTTGGATTTGATC 1146
Query 1085 TTGTGAATGACTTTTATGTATTACCAAATCACATTGAGAGTTTCATCTCGTTTTAA 1140
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1147 TTGTGAATGACTTTTATGTTTTACCAAATCACATTGAGAGTTTCATTTCATTTTAA 1202
> Ahg488665 jgi|Araly1|488665|fgenesh2_kg.6__1799__AT5G18160.1
Length=1182
Score = 1415 bits (766), Expect = 0.0
Identities = 1019/1136 (90%), Gaps = 37/1136 (3%)
Strand=Plus/Plus
Query 31 ACAACAAAATCTTCATCTACATTGACGACAAG---ATGCTCACATGGTAATCACATATCT 87
|||| | |||||||||||||||||| ||||| || ||||||||||||||||| ||||
Sbjct 58 ACAAGACAATCTTCATCTACATTGAAAACAAGACAATCCTCACATGGTAATCACAAATCT 117
Query 88 CAGTCAAACTCGATTCCTCTCGACATAACCATTGAGATACTCTCAAGACTTCCTGCGAAA 147
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 118 CAGTCAAACTCGATTCCTTTCGACATAACCTTTGAGATACTCTCAAGACTTCCTGCCAAA 177
Query 148 TCAATCGTCAGATCTCGCTCCGTCTCTAAGCTCTGGTCGTCCATTACCACCACACCAGAG 207
|||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 TCAATCGTGAGATATCGCTCCGTCTCTAAGCTCTGGTCGTTCATTACCACCACACCAGAG 237
Query 208 TTCATCAAGCA-TCGGTCCAAGAAGACATCACCACCTTGTGTTCTACTAATCTTCCGAAA 266
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 TTCATCAAG-ACTCGGTCCAAGAAGACATCACCACCGTGTGTTCTACTAATCTTCCGAAA 296
Query 267 ACACGACAAGCTGATCGTTTTCTCGTCTCCC-CAACACCAGAATACTTATTCTCATGTGC 325
||||||||||||||| || |||||||| ||| |||||| |||||||||||||| |||||
Sbjct 297 ACACGACAAGCTGATTGTGTTCTCGTC-CCCGCAACACAAGAATACTTATTCTTATGTGG 355
Query 326 AAGATTATCACATTGAAATCCCCAAGAATGGTTTCATCCGTCGTCTTGATTCCGTCCACG 385
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 AAGATTATCACATCGAAATCCCCAAGAATGGTTTCATCCGTCGTCTTGATTCCGTTCACG 415
Query 386 GTTTGATCTGCTTAGAAGGTTCTAAACAGCTCGTGATTTGTAACCCTACTTTGAAACGAT 445
| ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 416 GGTTGATTTGCTTTGAAGGTTCTAAACAGCTCGTGATTTGGAACCCTACCATGAAACGAT 475
Query 446 TCTTCCCTTTACCTGAGCCTCAAGGCACCGGTGACGAATACAACGTAGGAGGGTTTCTGG 505
|||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||
Sbjct 476 TCTTTACTTTACCTGAGCCTCAAGGCAACGGAGACGAATACTACGTAGGAGGGTTTTTGG 535
Query 506 GATATGAACCGATAGAGGGTAAATACAAAGCATTGTGCATTGTCAGAGGATGGAACACTC 565
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GATATGAACCGGTTGAGGGTAAATACAAAGCATTGTGCATTGTCAGAGGATGGAACACTC 595
Query 566 AAGTTCTTACATTGGAAATTCAAGAATCATGGAGAGTA--A-CCAAACCTGGCTATA-CA 621
||||||||||||||| | |||||||||||||||||||| | ||||| ||||| | |
Sbjct 596 AAGTTCTTACATTGGGAGTTCAAGAATCATGGAGAGTAGTAACCAAAGGTGGCTTTTTC- 654
Query 622 CATTGGCCTACTAAAGATACTGGACGATGCATTAATGGAGTTATCTACTATAAAGCTATT 681
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 655 CATTGGCCTACTAAAGACACTGGACGATGCATTAATGGAGTAATCTACTATAAAGCG-TT 713
Query 682 ATATTTGATAGGGTTCCAAGGCATGTTATATTTGGCTTTGATCTCAGATATGAAGAGTTT 741
| |||| || ||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 714 -T----GATATGGCTCCAAGGCATGCTATAATTAGCTTTGATCTCAGATATGAAGAGTTT 768
Query 742 ACACAT-ATTGAGTTTCCGATGCGTAATTATGACCGCTTTCTTATGGTATCTTATGAGGG 800
| || | ||||| |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 769 AAAC-TGATTGATTTTCCGATGCGTGATTATGACCGCTTTCTTATGGTCTCTTATGAGGG 827
Query 801 AAGGTTGGCTTTGATAAGTTCCACTAGCTCTGTTGTTGAAATCTGGAGTTTGGAGGATGC 860
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 828 AAGGTTGGCTTTGATAAGTGACACTAGCTCTGTTGTTGAAATATGGAGTTTGGAGGATGC 887
Query 861 AGGGAATCGAAAA-TGGTCGTATGAACAGTTTCATTTATGTCTTCCTCCCAACA-----C 914
||||||| |||| |||||||||| ||||||||||||| |||||||||| |||| |
Sbjct 888 AGGGAATA-AAAAGTGGTCGTATGGACAGTTTCATTTAAGTCTTCCTCCTAACAAATATC 946
Query 915 --AAGTC-T-G-A----AGGG-TGTTATTGATGCTGGTGAGCTTATTTACACAGGATTTA 964
|||| | | | |||| ||||| ||||| ||||||||||||||| |||||| | |
Sbjct 947 TGAAGTGGTTGGATCTTAGGGGTGTTACTGATGGTGGTGAGCTTATTTATACAGGAGTGA 1006
Query 965 GTTTGAATAGATCGTTCTGTGTTGTGTATTTTGATCCTAAGAAAAACAATATCAGAGAAA 1024
|||||||| ||||||||||||||||||||||||| || ||||||| || ||| ||||| |
Sbjct 1007 GTTTGAATGGATCGTTCTGTGTTGTGTATTTTGACCCGAAGAAAAGCAGTATAAGAGAGA 1066
Query 1025 CCAAGTTTCAAGGAATTGCGGATAACCAGATTTGGCAACCTGATAGACTTGGATTTGATC 1084
| ||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1067 CTAAGTTTCGAGGAATTACGGGTAACGAGATTTGGCAACCTGATAGACTTGGATTTGATC 1126
Query 1085 TTGTGAATGACTTTTATGTATTACCAAATCACATTGAGAGTTTCATCTCGTTTTAA 1140
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1127 TTGTGAATGACTTTTATGTTTTACCAAATCACATTGAGAGTTTCATTTCATTTTAA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5