BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18170.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488683 jgi|Araly1|488683|fgenesh2_kg.6__1817__AT5G18170.1 2183 0.0
Ahg927924 jgi|Araly1|927924|scaffold_300381.1 1301 0.0
> Ahg488683 jgi|Araly1|488683|fgenesh2_kg.6__1817__AT5G18170.1
Length=1501
Score = 2183 bits (1182), Expect = 0.0
Identities = 1394/1490 (94%), Gaps = 40/1490 (3%)
Strand=Plus/Plus
Query 3 ATCAGACTGACACCAATCTTCCTC-TTTAACAGTCGTTTTATTACAGCGTTCTGATCAAA 61
|||| |||||||||||||||| || |||||||||| ||||||||||||||||||||| |
Sbjct 1 ATCACACTGACACCAATCTTCTTCTTTTAACAGTCTTTTTATTACAGCGTTCTGATC--A 58
Query 62 ACTCCAGTGAAAGTTCAAAGTACACagagagaaacaaaaaaagaagaagaagaagttgaa 121
| | |||| | || ||||||||||| || ||||||||||||||||| |||
Sbjct 59 A----A---AAAG-T---AG---ACAGAGAGAAAGAAGAAAAGAAGAAGAAGAAGAAGAA 104
Query 122 gaagaagaagCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGCTAGG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 GAAGAAGAAGCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGCTAGG 164
Query 182 CTTCTTGGTCTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAATCAAG 241
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CTTCTTGGTTTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAATCAAG 224
Query 242 GTGGAATGTACCATACCGAAAGACGATGGTACACTAGCATCATTCGTTGGGTTCAGAGTT 301
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 225 GTGGAATGTACCATACCGAAAGACGATGGGACACTAGCATCATTCGTTGGGTTTAGAGTT 284
Query 302 CAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCTGAGGTTGAT 361
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 285 CAACACGACAATGCAAGAGGTCCCATGAAAGGCGGAATCAGATATCATCCCGAGGTTGAT 344
Query 362 CCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATT 421
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CCGGATGAAGTGAACGCACTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATT 404
Query 422 CCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTGATCCTAGCAAGCTCAGTATCTCCGAG 481
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 405 CCATACGGAGGAGCCAAAGGAGGGATTGGTTGTGATCCGAGCAAGCTCAGTATATCCGAG 464
Query 482 CTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATTCATGATCTCATTGGGATTCATACT 541
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 465 CTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATTGGGATTCAGACT 524
Query 542 GATGTTCCAGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGATGAA 601
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GATGTTCCTGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGATGAG 584
Query 602 TACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCTTGGT 661
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 585 TACTCTAAGTTCCATGGATATTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCTTGGT 644
Query 662 GGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGCTTTG 721
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 645 GGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGAACCGAAGCTTTG 704
Query 722 CTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTGTCATCCAGGGATTTGGTAAT 781
|||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct 705 CTTAACGAGCACGGCAAGAGCATATCGGGGCAGCGTTTTGTCATCCAGGGATTTGGGAAT 764
Query 782 GTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCCGTGAGT 841
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 765 GTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCGGTGAGT 824
Query 842 GACATTACCGGAGCAATCAAGAACAAGGATGGTATCGATATCCCGGCCTTGCTCAAGCAT 901
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 825 GACATTACCGGAGCAATCAAGAATAAGGATGGTATCGATATCCCGGCCTTGCTCAAGCAT 884
Query 902 ACTAAAGAACACAGAGGTGTCAAAGGGTTTGATGGTGCAGATCCGATCGATCCAAACTCC 961
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 885 ACTAAAGAACACAGAGGTGTCAAAGGGTTTGACGGTGCAGATTCGATCGATCCAAACTCC 944
Query 962 ATACTGGTTGAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCATCAACAGG 1021
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 945 ATACTGGTCGAGGATTGCGATATCCTCGTCCCTGCAGCACTTGGCGGTGTCATCAACAGG 1004
Query 1022 GAGAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCAGCTAATCATCCAACTGAT 1081
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1005 GAAAATGCGAATGAGATTAAAGCAAAGTTCATCATAGAAGCTGCTAATCATCCAACTGAT 1064
Query 1082 CCGGACGCGGATGAGATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACATATATGCA 1141
|||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1065 CCGGACGCGGATGAGATCTTGAGTAAGAAAGGTGTGGTAATTCTCCCAGACATATATGCA 1124
Query 1142 AACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGAACATTCAAGGCTTTATG 1201
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1125 AACTCTGGAGGAGTCACTGTCAGTTACTTCGAATGGGTCCAGAACATTCAAGGGTTTATG 1184
Query 1202 TGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGACTTACATGACTCGCTCTTTCAAGGAC 1261
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1185 TGGGAGGAAGAGAAGGTGAACGAGGAGCTAAAGACTTACATGACTCGCTCATTCAAGGAC 1244
Query 1262 TTGAAAGAGATGTGCAAAACTCACTCTTGCGATCTCCGGATGGGAGCTTTCACACTCGGT 1321
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1245 TTGAAAGAGATGTGCAAAACTCACTCCTGCGATCTCCGGATGGGAGCTTTCACACTAGGT 1304
Query 1322 GTTAATCGTGTGGCTCAAGCTACCATTCTCAGAGGCTGGGGAGCTTAAAGATTATCTAAT 1381
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1305 GTTAATCGTGTGGCTCAGGCTACCATTCTCAGAGGCTGGGGAGCTTAA-GATTATCTAAT 1363
Query 1382 CTCTTATGCAATCTCTTTAGCAGCTCCTGAATAAGAATTGAGCCAAACTTTAATCTACTT 1441
|| | || || || | | | ||| || | ||||| |||||||| ||||
Sbjct 1364 CT---A-GC--TC-CT---G-A-------A-TAA-AACGG-GCCAACCTTTAATCCACTT 1402
Query 1442 TTTGTTTTATCCTCCTACTTTGGCTTAGAGGTCATCCTGAGTTAACAGAT 1491
|||||||| ||||| |||||||||||||||||| | ||||||||||||||
Sbjct 1403 TTTGTTTTCTCCTC-TACTTTGGCTTAGAGGTCCTACTGAGTTAACAGAT 1451
> Ahg927924 jgi|Araly1|927924|scaffold_300381.1
Length=1276
Score = 1301 bits (704), Expect = 0.0
Identities = 1069/1249 (86%), Gaps = 10/1249 (1%)
Strand=Plus/Plus
Query 120 aaga-agaaga-agCCATGAATGCTTTAGCAGCAACAAACAGAAACTTCAAGTTAGCTGC 177
|||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct 5 AAGAGAGAAGAGAGCCATGAATGCTTTAGCAGCAACCAACAGAAACTTCAAGCTAGCTTC 64
Query 178 TAGGCTTCTTGGTCTGGATTCTAAGCTCGAGAAAAGTCTTCTCATCCCCTTCCGAGAAAT 237
||||||||||||| | || || ||||||||||||||||||||||| |||||| |||| ||
Sbjct 65 TAGGCTTCTTGGTTTAGACTCAAAGCTCGAGAAAAGTCTTCTCATTCCCTTCAGAGAGAT 124
Query 238 CAAGGTGGAATGTACCATACCGAAAGACGATGGTACACTAGCATCATTCGTTGGGTTCAG 297
||||||||||||||||||||||||||| ||||| || || |||||||| ||||| |||||
Sbjct 125 CAAGGTGGAATGTACCATACCGAAAGATGATGGAACTCTTGCATCATTTGTTGGATTCAG 184
Query 298 AGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCTGAGGT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 185 AGTTCAACACGACAATGCAAGAGGTCCCATGAAAGGTGGAATCAGATATCATCCAGAGGT 244
Query 358 TGATCCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAA 417
|| ||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 245 CGAACCGGATGAAGTAAACGCTTTGGCTCAACTTATGACATGGAAAACAGCAGTGGCTAA 304
Query 418 GATTCCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTGATCCTAGCAAGCTCAGTATCTC 477
||| |||||||||||||| |||||||| || |||||||| || ||| |||| ||||||||
Sbjct 305 GATACCTTACGGAGGAGCCAAAGGAGGAATCGGTTGTGACCCGAGCCAGCTAAGTATCTC 364
Query 478 CGAGCTCGAGCGGTTGACTCGAGTTTTCACTCAGAAGATTCATGATCTCATTGGGATTCA 537
||||| || || |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 365 AGAGCTGGAACGTTTGACTCGAGTTTTCACTCAGAAGATCCATGATCTCATCGGGATTCA 424
Query 538 TACTGATGTTCCAGCTCCAGATATGGGCACTGGTCCTCAGACAATGGCTTGGATTCTTGA 597
||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 425 TACCGATGTTCCAGCTCCTGATATGGGAACCGGTCCTCAGACAATGGCTTGGATTCTTGA 484
Query 598 TGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTGATCT 657
||||||||| || || ||||| |||||||||| || ||||| |||||||||||||||||
Sbjct 485 TGAATACTCAAAATTCCATGGGCACTCGCCTGCTGTGGTGACCGGAAAACCCATTGATCT 544
Query 658 TGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGC 717
|||||||| || || ||||| || ||||| |||||||||||| | |||| || |||||
Sbjct 545 CGGTGGATCTCTTGGAAGAGATGCTGCTACAGGAAGAGGAGTGTTATTTGCAACAGAAGC 604
Query 718 TTTGCTTAACGAGCACGGAAAGACCATATCAGGGCAGCGTTTTG-TCATCCAGGGATTTG 776
||| || || || || ||||||| |||||| || ||||| || | | |||||||| ||||
Sbjct 605 TTTACTCAATGAACATGGAAAGAGCATATCTGGACAGCGATTCGCT-ATCCAGGGTTTTG 663
Query 777 GTAATGTGGGTTCTTGGGCGGCAAAGCTGATAAGTGAAAAGGGTGGGAAGATTGTTGCCG 836
| ||||||||||||||||| || | | ||||||||||||| ||||| |||||||| || |
Sbjct 664 GAAATGTGGGTTCTTGGGCAGCGAGGTTGATAAGTGAAAAAGGTGGTAAGATTGTGGCGG 723
Query 837 TGAGTGACATTACCGGAGCAATCAAGAACAAGGATGGTATCGATATCCCG-GCCTTGCTC 895
||||||| | || |||||||||||||||||| |||| || || ||| | | |||||
Sbjct 724 TGAGTGATGTCACAGGAGCAATCAAGAACAAGAATGGAATTGACATCTTGAGT-TTGCTG 782
Query 896 AAGCATACTAAAGAACACAGAGGTGTCAAAGGGTTTGATGGTGCAGATCCGATCGATCCA 955
||||| | ||||| ||||||| ||||||||||||||||||| ||| | | ||||||
Sbjct 783 GAGCATGCCGAAGAAAACAGAGGAATCAAAGGGTTTGATGGTGCTGATTCAACCGATCCT 842
Query 956 AACTCC-ATACTGGTTGAGGATTGTGATATCCTCGTCCCTGCAGCACTTGGTGGTGTCAT 1014
| | | || || || || ||||||||||| || ||||| ||||| || || ||||||||
Sbjct 843 GA-TACGATTCTTGTCGAAGATTGTGATATTCTTGTCCCCGCAGCTCTAGGCGGTGTCAT 901
Query 1015 CAACAGGGAGAATGCGAATGAGATTAAAGC-AAAGTTCATCATAGAAGCAGCTAATCATC 1073
||||||||| ||||| || || || ||||| ||| |||||||| |||| |||||||| |
Sbjct 902 CAACAGGGAAAATGCAAACGAAATCAAAGCGAAA-TTCATCATTGAAGGTGCTAATCACC 960
Query 1074 CAACTGATCCGGACGCGGATGAGATCCTAAGTAAGAAAGGTGTGGTTATTCTCCCGGACA 1133
|||||||||| || || ||||||||| | || ||||||||||| || || ||||| || |
Sbjct 961 CAACTGATCCTGAGGCTGATGAGATCTTGAGGAAGAAAGGTGTTGTAATCCTCCCAGATA 1020
Query 1134 TATATGCAAACTCTGGAGGAGTCACTGTAAGTTACTTCGAATGGGTTCAGAACATTCAAG 1193
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1021 TATACGCAAACTCGGGAGGAGTTACTGTAAGTTACTTCGAGTGGGTTCAGAACATACAAG 1080
Query 1194 GCTTTATGTGGGAGGAAGAGAAGGTGAACGATGAGCTAAAGACTTACATGACTCGCTCTT 1253
| || |||||||| || || |||||||| | ||||||||||| || ||||||||| |
Sbjct 1081 GGTTCATGTGGGATGAGGAAAAGGTGAATAAGGAGCTAAAGACATATATGACTCGCGGGT 1140
Query 1254 TCAAGGACTTGAAAGAGATGTGCAAAACTCACTCTTGCGATCTCCGGATGGGAGCTTTCA 1313
|||| ||||| ||||||||||| | |||||||| || ||||| || |||||||||||||
Sbjct 1141 TCAAAGACTTAAAAGAGATGTGTATGACTCACTCATGTGATCTTCGTATGGGAGCTTTCA 1200
Query 1314 CACTCGGTGTTAATCGTGTGGCTCAAGCTACCATTCTCAGAGGCTGGGG 1362
| || ||| |||| ||||| ||||||||||||||| |||||||||||||
Sbjct 1201 CTCTTGGTATTAACCGTGTCGCTCAAGCTACCATTATCAGAGGCTGGGG 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5