BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18180.1

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg350922 jgi|Araly1|350922|fgenesh1_pg.C_scaffold_6001515           643    0.0  


> Ahg350922 jgi|Araly1|350922|fgenesh1_pg.C_scaffold_6001515
Length=591

 Score =  643 bits (348),  Expect = 0.0
 Identities = 436/475 (92%), Gaps = 19/475 (4%)
 Strand=Plus/Plus

Query  1    ATGAGACCACCACGTGGCGGCGGCAGCTTCAGGGGAAGGGGAGGAAGAGATAACGGCgga  60
            ||||||||||||||||||||||| || ||||||||||||||||||||||||   ||||| 
Sbjct  1    ATGAGACCACCACGTGGCGGCGGGAGTTTCAGGGGAAGGGGAGGAAGAGAT---GGCGG-  56

Query  61   cgtggacgtggacgtggacgtggac-gtggacgctttggtggtggTAATT-ATGACGAAG  118
            |   |||| |||  | |  |||| | ||||||||   ||| ||  |  ||  ||||||||
Sbjct  57   C--AGACGCGGA-TTTG--GTGG-CGGTGGACGC---GGTCGT--T--TTGGTGACGAAG  103

Query  119  GACCTCCCAGCGAAGTCGTTGAAGTTGCAACTTTTCTCCATGCTTGTGAGGGAGATGCTG  178
            |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  104  GACCTCCCAGCGAAGTCGTTGAGGTTGCAACCTTTCTCCATGCTTGTGAGGGAGATGCTG  163

Query  179  TGTTCAAGCTCTCCAATGTGAAAATCCCACATTTCAATGCCCCAATCTACCTACAAAACA  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  164  TGTTCAAGCTCTCCAATGTGAAAATCCCACATTTCAATGCCCCAATCTACCTACAAAACA  223

Query  239  AGACCCAGATTGGGAGAGTAGATGAAATCTTTGGTCCTATTAATGAATCTCTATTTTCTA  298
            ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct  224  AGACCCAGATTGGGAGAGTAGATGAAATCTTTGGTCCGATTAACGAATCTCTGTTTTCTA  283

Query  299  TCAAAATGAGGGAAGGTATTGTAGCTACCTCATATAGTCAAGGCGATAAGTTCTTCATTA  358
            ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct  284  TCAAAATGAGGGAAGGTATTGTAGCAACCTCGTATACTCAAGGCGATAAGTTCTTCATTA  343

Query  359  GCCCTGAGAAGCTTTTACCTCTATCAAGATTCCTTCCTCAACCAAAGGGACAATCAGGAG  418
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  344  ACCCTGAGAAGCTTTTACCTCTATCAAGATTCCTTCCTCAACCAAAGGGGCAATCAGCAG  403

Query  419  GCCGTGGTGAAGGAAGAGTCCCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGG  473
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  404  GCCGTGGTGGAGGAAGAGTCCCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGG  458


 Score =  217 bits (117),  Expect = 9e-56
 Identities = 127/132 (96%), Gaps = 0/132 (0%)
 Strand=Plus/Plus

Query  439  CCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGGCAATTTCAGAGGTAGAGGTGCTCCC  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  460  CCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGGCAATTTCAGAGGTAGAGGTGCTCCC  519

Query  499  AGAGGTGCTAGCAGAGGGTTTCAACCAAGAGGTGGTCCTCGTGGAGGCTTCAGAGGCCGA  558
            ||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct  520  AGAAGTGTTAGCAGAGGGTTTCATCAAAGAGGTGGTCCTCGTGGAGGCTTCAGAGGCCGA  579

Query  559  GGGAGGGCCTAG  570
            ||||| ||||||
Sbjct  580  GGGAGAGCCTAG  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20832951594


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5