BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18190.1
Length=2674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488686 jgi|Araly1|488686|fgenesh2_kg.6__1820__AT5G18190.2 4078 0.0
Ahg927930 jgi|Araly1|927930|scaffold_300387.1 2259 0.0
Ahg340491 jgi|Araly1|340491|fgenesh1_pg.C_scaffold_3000254 715 0.0
Ahg340552 jgi|Araly1|340552|fgenesh1_pg.C_scaffold_3000315 551 1e-155
> Ahg488686 jgi|Araly1|488686|fgenesh2_kg.6__1820__AT5G18190.2
Length=2632
Score = 4078 bits (2208), Expect = 0.0
Identities = 2471/2592 (95%), Gaps = 42/2592 (2%)
Strand=Plus/Plus
Query 76 CTGAATCTTTCTCTCTCTTTATCTCCATTTTCTAGGTGTGCTTATCACAGCTAGAAAGTT 135
||||| |||||||||| | |||||| | | ||||||||||| | ||||||||||||||||
Sbjct 57 CTGAAGCTTTCTCTCTATCTATCTCTA-TCTCTAGGTGTGC-T-TCACAGCTAGAAAGTT 113
Query 136 CTTACATTTAAATCGCCCTAGTTGGAGAAAGCCGTCGGTTTCTCATTTTGAAATTTCCAA 195
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 114 CTCACATTTAAATCGCCGTAGTTGGAGAAAGCCGTCGGTTTCTCGTTTTGAAATTTCCAA 173
Query 196 GGAGATCTGAAAGTTTTAATTTTTTGGATCGATTTCATCGTTATCATACTCCGATCATCA 255
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 174 GGAGATCTGAAAGTTTCAATTTTTTGGATCGATTTCATCGTTATCATAGTCCGATCATCG 233
Query 256 TTTCTGTTCAAGGGTTAATCGTAAATCGTTCATCGGGTTAGTTAAAGAGGTTTACTGAAA 315
||||| || ||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 234 TTTCTTTTTAAGGGTTAATCCTAAATCGTTCATCTGGTTAGTTAAAGAGGTTTACCGAAA 293
Query 316 GCAAAATACTTTCTTACTCTTTGTATGGAGTAAGAATGCCAGAGTTAAGAAGTGGAGCAC 375
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 294 GCAAAATACTTTCTTACTCTTTGTATGGAGTAAGAATGCCAGAGCTAAGAAGTGGAGCAC 353
Query 376 GTAGATTGAGACAACCTAGCCCTCAGGTGACTGGTCAGGCGGATAATATTGAACTTCCTC 435
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 354 GTAGATTGAGACAACCTAGCCCTCAGGTAACTGGTCAGGCGGATAATATTGAACTTCCTC 413
Query 436 CTCAGCCTGTAACAAGGAGAAGAGGCGGTGGTGGTAGAGGAAGGGGAAA-----C-GCCA 489
||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 414 CTCAGCCTGTAACAAGGAGAAGAGGTGGTGGTGGTAGAGGAAGGGGAAACGCTGCAGCCA 473
Query 490 AAGGTGCTGCACCTCCAAGA-CCAGCTGGTGGTGTCGGTAGGGGTCGAGGCATCAGATTA 548
|||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||
Sbjct 474 AAGGTGCTGCACCTCCAAGACCCA-CTGGTGGTGCCGGTAGGGGTCGAGGCATCAGGTTA 532
Query 549 ATAGATTTAGAGGCAGAACCTTGTGAAGTTCGTCCAGCAGTAGGTGAACCTGCTTTTAAT 608
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 533 ATAGATTTAGAGGCAGAACCTTGTGAGGTTCGTCCAGCAGTAGGTGAACCTGCTTTTAAT 592
Query 609 CAAGTTGAAGCG-GTAGCTGAAAAGGATATTGCTATGGAAGGTGGTAGCGCAGAGAAGGT 667
|||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 593 CAAGTTGAAG-GAGTAGCTGATAAGGATATTGCTATGGAAGGTGGTAGCGCAGAGAAGAT 651
Query 668 AGTTGGTGTGGAAGAAGATTCTAGCACAGCTCCAGTCCCTGAAAGGGTACAAGTTGGAAA 727
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 AGTTGGTGTGGAAGAAGATTCTAGCACAGCTCCAGTCCCTGAAAGGGTACAAGTCGGAAA 711
Query 728 TTCTCCTGTATATAAGACTGAGAGGAAACTCGGTAAAGGAGGCTTTGGTCAAGTTTTTGT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTCTCCTGTATATAAGACTGAGAGGAAACTCGGTAAAGGAGGCTTTGGTCAAGTTTTTGT 771
Query 788 TGGTAGAAGGGTGAGTGGTGGCAGCGATAGGATTGGGGCCGATGCAATTGAGGTGGCCCT 847
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 AGGTAGAAGGGTGAGTGGTGGCAGCGATAGAATTGGGGCCGATGCAATTGAGGTGGCCCT 831
Query 848 GAAATTTGAGCATCGAAATAGCAAAGGATGCAATTTTGGTCCACCTTACGAGTGGCAAGT 907
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 832 GAAATTTGAGCATCGAAATAGCAAAGGCTGCAATTTTGGTCCCCCTTATGAGTGGCAAGT 891
Query 908 GTACAATACCCTCAATGGTTGCTATGGAGTTCCTGCGGTACATCATAAGGGTCGTCAAGG 967
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GTACAATACTCTCAATGGTTGCTATGGAGTTCCTGCGGTACATCATAAGGGTCGTCAAGG 951
Query 968 AGATTTTTACATTCTTGTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTC 1027
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 952 AGATTTTTACATTCTTGTCATGGACATGCTTGGTCCAAGTCTCTGGGATGTTTGGAATTC 1011
Query 1028 TTCGGGGCAATCGATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTAT 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TTCGGGGCAATCGATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTAT 1071
Query 1088 TCTTGAGAAACTTCATATGAAAGGGTTTGTCCACGGAGATGTGAAGCCGGAAAACTTTTT 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TCTTGAGAAACTTCATATGAAAGGGTTTGTCCACGGAGATGTGAAGCCGGAAAACTTTTT 1131
Query 1148 ACTCGGTCAACCAGGAACAGCAGATGAGAAAAAACTCTACCTTATCGATCTTGGTCTGGC 1207
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ACTCGGTCAACCGGGAACAGCAGATGAGAAAAAACTCTACCTTATCGATCTTGGTCTGGC 1191
Query 1208 ATCTAAATGGAAAGATTCACACTCAGGCCAGCATGTTGAATATGATCAAAGACCTGATGT 1267
||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 1192 ATCAAAATGGAAAG------AGTCAGGCCTGCATGTTGAATATGATCAAAGACCTGATGT 1245
Query 1268 GTTCAGGGGAACGATAAGGTATGCAAGTGTTCATGCACACCTAGGTCGAACTGGAAGTAG 1327
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1246 GTTCAGGGGAACGATAAGGTATGCAAGTGTTCATGCGCATCTAGGTCGAACTGGAAGTAG 1305
Query 1328 GAGAGATGATCTGGAGTCGCTGGCTTATACTTTAATTTTTCTTTTGAAGGGAAGATTGCC 1387
||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||
Sbjct 1306 GAGAGATGATCTGGAGTCGTTGGCTTATACTTTAGTTTTTCTCTTGAAGGGAAGATTGCC 1365
Query 1388 ATGGCAAGGATATCAGGGTGACAACAAGAGCTTTCTTGTTTGCAAGAAAAAGATGTCAAC 1447
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1366 ATGGCAAGGATATCAGGGTGACAACAAGAGCTTTCTTGTCTGCAAGAAAAAGATGTCAAC 1425
Query 1448 TTCTCCTGAATTGATGTGCTGTTTTTGTCCACCCCCGTTTAAGCTCTTCCTCGAGGCAGT 1507
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1426 GTCTCCTGAATTGATGTGCTGTTTTTGTCCACCCCCGTTTAAGCTATTCCTCGAGGCAGT 1485
Query 1508 TACAAACATGAAGTTTGACGAAGAGCCCAACTATGCAAAGCTTATTTCGATTTTTGATTC 1567
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TACTAATATGAAGTTTGACGAAGAGCCCAACTATGCAAAGCTTATTTCGATTTTTGATTC 1545
Query 1568 TCTTATTGAACAATGTGCACTATCTAGACCAATTAAAATTGATGGTGCTCTTAAGGTTGG 1627
||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1546 TCTTATTGAACCATGTGCACTATCTAGACCAATTAGAATTGATGGGGCTCTTAAGGTTGG 1605
Query 1628 GCAAAAACGAGGAAGAATGCTTCTTAATTTGGATGAGGATGAACAGCCAAAGAAGAAAAT 1687
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1606 GCAAAAACGAGGAAGATTGCTTCTTAATTTGGAAGAGGATGAACAGCCAAAGAAGAAAAT 1665
Query 1688 CAGAATTGGCAGTCCTGCTTGTCAGTGGATCTCAGTCTATAATGCTCGTCGTCCCATGAA 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 CAGAATTGGCAGTCCTGCTTGTCAGTGGATCTCAGTCTATAATGCTCGTCGTCCCATGAA 1725
Query 1748 ACAGAGATATCACTACAACGTTGCAGACTCAAGGTTGCATCAGCATGTACAGAAGGGTAA 1807
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1726 ACAGAGATATCACTACAACGTTGCAGACTCAAGGCTGCACCAGCATGTACAGAAGGGTAA 1785
Query 1808 TGAGGATGGCCTTTTAATTAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAAT 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 TGAGGATGGCCTTTTAATTAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAAT 1845
Query 1868 GGATGCTGGGACTGGATTCACCTCTCAAGTTTATGAATTGTCAACTGTCTTCCTTCACAA 1927
|||||| ||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 1846 GGATGCCGGGACTGGATTCAGCTCTCAAGTTTATGAATTGTCGGCGGTCTTCCTTCACAA 1905
Query 1928 GGACTGGATTATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTTCAGA 1987
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1906 GGACTGGATTATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGGAGA 1965
Query 1988 TAACGGGAACTCATTAGTTGTTATGTCAAAAGGAACGTCTTATACTCAGCAATCTTACAA 2047
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 TAACGGGAGCTCGTTAGTTGTTATGTCAAAAGGAACGTCTTATACTCAGCAATCTTACAA 2025
Query 2048 AGTCAGCGACTCTTTTCCTTTCAAGTGGATAAACAAGAAATGGAAAGAAGATTTCCATGT 2107
|||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2026 AGTCAGCGACTCATTCCCTTTCAAGTGGATAAATAAGAAATGGAAAGAAGATTTTCATGT 2085
Query 2108 AACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTA 2167
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2086 GACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTAGTAATGTCGAGGAATTCTGGCTT 2145
Query 2168 CTCTGATCAGGTCGTGGAGCTCGACTTTTTGTACCCAAGCGATGGAATACATAGGAGGTG 2227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 CTCTGATCAGGTCGTGGAGCTCGACTTTTTGTACCCAAGCGATGGAATACATAGGAGGTG 2205
Query 2228 GGAAAGTGGGTATAGGATAACATCAATGGCAGCAACTGCAGATCAAGCAGCTTTCATATT 2287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 GGAAAGTGGGTATAGGATAACATCAATGGCAGCAACTGCAGATCAAGCAGCTTTCATATT 2265
Query 2288 AAGCGTACCAAAACGTAAAATGATGGATGAAACTCAAGAGACTCTTCGCACCACCGCCTT 2347
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2266 AAGCGTACCAAAACGTAAAATGATGGATGAAACTCAAGAGACCCTTCGCACCACTGCCTT 2325
Query 2348 TCCAAGCACTCATGTCAAGGAAAAATGGGCGAAAAATCTGTACATTGCATCAATATGCTT 2407
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2326 TCCAAGCACTCATGTCAAGGAGAAATGGGCGAAAAATCTGTACATTGCATCAATATGCTT 2385
Query 2408 TGGGAGGACAGTTTGCTGAGGTACTTAGCATCATATG-------A-AA-GCCAAGAAGAC 2458
||||||||||||||||||||||||| ||||||||||| | || ||||| |||||
Sbjct 2386 TGGGAGGACAGTTTGCTGAGGTACTGAGCATCATATGTTCTGTTACAAAGCCAAAAAGAC 2445
Query 2459 AATTGGAGGATAAGGATCATAATACGATCAAGAAGGT-AA--C--G-C--AACCTGTTTG 2510
||||||||||||||||||||||||||||||| ||||| || | | | ||||||||||
Sbjct 2446 AATTGGAGGATAAGGATCATAATACGATCAAAAAGGTGAAAACCAGACGCAACCTGTTTG 2505
Query 2511 TTAAATGTAATGAAATGGATGCGTGTTCGTATGTATGTAGAAGTAT-AAAAGGATAGAAA 2569
|||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2506 TTAAATGTAATGAAATGGATGCGTCTTCGTATGTATGTAGAAGTATGAAAAG-ATAGAAA 2564
Query 2570 AGATGGTAACAGAGAAGTTGAATTAGTTTTAATAGAAAGTTTTGAGGGCTTTTTAAGCCT 2629
||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2565 TGATGGTAACAGAGAA-TTGGATTAGC---AATAGAAAGTTTTGAGGGCTTTTTAAGCCT 2620
Query 2630 TCAAGTGTGCTT 2641
||||||||||||
Sbjct 2621 TCAAGTGTGCTT 2632
Score = 87.9 bits (47), Expect = 3e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1 AATTCATCCCCAAATCTGCACCTCCTCTCATCTTCTTCATCTCCTTCAATCTTCAT 56
||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AATTCTTGCCCAAATCTGCACCTCCTCTCATCTTCTTCATCTCCTTGAATCTTCAT 56
> Ahg927930 jgi|Araly1|927930|scaffold_300387.1
Length=2149
Score = 2259 bits (1223), Expect = 0.0
Identities = 1848/2143 (86%), Gaps = 69/2143 (3%)
Strand=Plus/Plus
Query 335 TTTGTATGGAGTAAGAATGCCAGAGTTAAGAAGTGGAGC-A--CG-T--AGA----TTGA 384
|||| |||||||||||||||||||||||||||||||||| | | | ||| ||||
Sbjct 5 TTTGCATGGAGTAAGAATGCCAGAGTTAAGAAGTGGAGCAAGGAGATCGAGACGCCTTGA 64
Query 385 -GA-CAACCTAGCCCTCAGGTGA-CTGGTCAGGCGGATAATATTGAACTTCCTCCTCAGC 441
|| || |||| ||||||| | | || || || || ||||||| |||||||||||||
Sbjct 65 CGAGCAGCCTAACCCTCAGCT-AGTTGAACAAGCAGAAAATATTGTACTTCCTCCTCAGA 123
Query 442 CTGTAACAAGGAGAAGAGGCGGTGGTGGTAGAGGAA-GGGGAA-AC-GC-----C-AAAG 492
||| ||||||||||||| |||||||||||||||| |||||| | || | ||||
Sbjct 124 CTGCAACAAGGAGAAGA---GGTGGTGGTAGAGGAAGGGGGAATGCTGCTTTAGCTAAAG 180
Query 493 GTGCTG-CACCTCCAAGACCAGCTGGTGGTGTCGGTAGGGGTC-GAGGCATCAGATT-AA 549
||| | |||||||||||||| | || || ||||||||| | | || ||||| || |
Sbjct 181 CTGC-GCCACCTCCAAGACCAAC---TGCTGCCGGTAGGGG-CAGGGGTATCAGGTTGAC 235
Query 550 TAGATTTAGAGGCAGAACCTTGTGAAGTTCGTCCA---GCA------G---TA--GG--- 592
| || |||||| ||||||||||||| ||||||||| ||| | || ||
Sbjct 236 T-GACTTAGAGCCAGAACCTTGTGAGGTTCGTCCAGCTGCAGGTGCTGCTATAGGGGCCA 294
Query 593 -TGAACCTGCTTTTAATCAAGTTGAAGCGGTAGCTGAAAAGGATATTGCTATGGAAGGTG 651
||||||||| || |||| |||||||| ||| ||||| |||||||||||| |||||| |
Sbjct 295 CTGAACCTGCCTTAAATCGAGTTGAAGGGGTCGCTGATAAGGATATTGCTGCGGAAGGCG 354
Query 652 GTAGCGCAGAGAAGGTAGTTGGTGTGGAAGAAGATTCTAGCACAGCTCCAGTCCCTGAAA 711
||||||||||||| ||||| || ||||||||||||| |||| | ||||||||||||||
Sbjct 355 GTAGCGCAGAGAAAGTAGTAGGCATGGAAGAAGATTCCAGCATGGGTCCAGTCCCTGAAA 414
Query 712 GGGTACAAGTTGGAAATTCTCCTGTATATAAGACTGAGAGGAAACTCGGTAAAGGAGGCT 771
||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||
Sbjct 415 GGGTACAAGTTGGAAATTCTCCTGTTTATAAGACGGAGAGGAAACTTGGTAAGGGTGGCT 474
Query 772 TTGGTCAAGTTTTTGTTGGTAGAAGGGTGAGTGGTGGCAGCGATAGGATTGGGGCCGATG 831
|||||||||||| |||||| |||||||||||||| ||||| ||||||||||| || ||||
Sbjct 475 TTGGTCAAGTTTATGTTGGCAGAAGGGTGAGTGGGGGCAGTGATAGGATTGGAGCAGATG 534
Query 832 CAATTGAGGTGGCCCTGAAATTTGAGCATCGAAATAGCAAAGGATGCAATTTTGGTCCAC 891
|||||||||| || |||||| |||| ||||||||||| ||||| || |||||||| ||||
Sbjct 535 CAATTGAGGTAGCTCTGAAACTTGAACATCGAAATAGTAAAGGCTGTAATTTTGGCCCAC 594
Query 892 CTTACGAGTGGCAAGTGTACAATACCCTCAATGGTTGCTATGGAGTTCCTGCGGTACATC 951
||||||||||||||||||||||||| |||||| | || |||||| ||||||| |||||||
Sbjct 595 CTTACGAGTGGCAAGTGTACAATACGCTCAATAGCTGTTATGGAATTCCTGCTGTACATC 654
Query 952 ATAAGGGTCGTCAAGGAGATTTTTACATTCTTGTCATGGACATGCTTGGTCCGAGTCTCT 1011
||||||||||||||||||||||||||||||| ||||||||||||||||| || || || |
Sbjct 655 ATAAGGGTCGTCAAGGAGATTTTTACATTCTGGTCATGGACATGCTTGGGCCTAGCCTTT 714
Query 1012 GGGATGTTTGGAATTCTTCGGGGCAATCGATGTCTCCAAACATGGTAGCCTGCATTGCAG 1071
|||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 715 GGGATGTTTGGAATTCTTTGGCTCAATCGATGTCTCCAAACATGGTAGCATGCATTGCAG 774
Query 1072 TTGAGTCCATATCTATTCTTGAGAAACTTCATATGAAAGGGTTTGTCCACGGAGATGTGA 1131
| ||| | |||||||||||||| ||||| |||||||| |||||||| || ||||||||||
Sbjct 775 TGGAGGCGATATCTATTCTTGAAAAACTGCATATGAAGGGGTTTGTGCATGGAGATGTGA 834
Query 1132 AGCCGGAAAACTTTTTACTCGGTCAACCAGGAACAGCAGATGAGAAAAAACTCTACCTTA 1191
| || |||||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||
Sbjct 835 AACCAGAAAACTTTTTACTTGGTCAGCCTGGAACAGCAGACGAGAAGAAACTATACCTTA 894
Query 1192 TCGATCTTGGTCTGGCATCTAA-ATGGAAAGATTCACACTCAGGCCAGCATGTTGAATAT 1250
||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 895 TCGATCTTGGTCTAGCATC-AAGATGGAAAGATTCACACTCTGGCCAGCATGTTGAATAT 953
Query 1251 GATCAAAGACCTGATGTGTTCAGGGGAACGATAAGGTATGCAAG-TGTTCATGCACACCT 1309
|||||||| || ||||| || || ||||| |||||||||||||| || ||||||||| ||
Sbjct 954 GATCAAAGGCCAGATGTATTTAGAGGAACAATAAGGTATGCAAGTTG-TCATGCACATCT 1012
Query 1310 AGGTCGAACTGGAAGTAGGAGAGATGATCTGGAGTCGCTGGCTTATACTTTAAT-TTTTC 1368
||||| || |||||| |||| |||||||||||||| |||||||||| ||||| ||||
Sbjct 1013 TGGTCGGACAGGAAGTCGGAGGGATGATCTGGAGTCATTGGCTTATACATTAATATTTT- 1071
Query 1369 TTTTGAAGGGAAGATTGCCATGGCAAGGATATCAGGGTGACAACAAGAGCTTTCTTGTTT 1428
| || |||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1072 TGATGCGGGGAAGGTTGCCATGGCAAGGGTACCAGGGTGACAACAAGAGCTTTCTTGTTT 1131
Query 1429 GCAAGAAAAAGATGTCAACTTCTCCTGAATTGATGTGCTGTTTTTGTCCACCCCCGTTTA 1488
| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1132 GTAAGAAAAAGATGTCAACCTCTCCTGAATTGATGTGTTGTTTTTGTCCTCCCCCGTTTA 1191
Query 1489 AGCTCTTCCTCGAGGCAGTTACAAACATGAAGTTTGACGAAGAGCCCAACTATGCAAAGC 1548
|||| ||||||||||||||||| || ||||||||||| || |||||||||||||| ||||
Sbjct 1192 AGCTGTTCCTCGAGGCAGTTACTAATATGAAGTTTGATGAGGAGCCCAACTATGCCAAGC 1251
Query 1549 TTATTTCGATTTTTGATTCTCTTATTGAACAATGTGC-ACTATCTAGACCAATTAAAATT 1607
|||| |||||||||||| ||||||| || | |||||| | ||||||||||||||| ||||
Sbjct 1252 TTATCTCGATTTTTGATACTCTTATCGAGCCATGTGCTA-TATCTAGACCAATTAGAATT 1310
Query 1608 GATGGTGCTCTTAAGGTTGGGCAAAAACGAGGAAGAATGCTTCTTAATTTGGATGAGGAT 1667
||||| |||||||||||||| ||||| ||||||||| ||||| | |||||||| ||||||
Sbjct 1311 GATGGGGCTCTTAAGGTTGGCCAAAAGCGAGGAAGATTGCTTATCAATTTGGAAGAGGAT 1370
Query 1668 GAACAGCCAAAGAAGAAAATCAGAATTGGCAGTCCTGCTTGTCAGTGGATCTCAGTCTAT 1727
|||||||||| ||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct 1371 GAACAGCCAAGGAAGAAAATTAGAATCGGCAGTCCTGCCACACAGTGGATTTCAGTCTAT 1430
Query 1728 AATGCTCGTCGTCCCATGAAACAGAGATATCACTACAACGTTGCAGACTCAAG-GTTGCA 1786
||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1431 AATGCACGCCGTCCTATGAAACAGAGATATCATTACAATGTTGCAGACTCAAGACTTGCA 1490
Query 1787 TCAGCATGTACAGAAGGGTAATGAGGATGGCCTTTTAATTAGCTGTGTAGCATCAGCAGC 1846
|||||||| |||| ||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 1491 -CAGCATGTTGAGAAAGGTAACGAGGATGGCCTTTTCATAAGCTGTGTAGCATCAGCAGC 1549
Query 1847 TAATCTCTGGGCCCTCATAATGGATGCTGGGACTGGATTCACCTCTCAAGTTTATGAATT 1906
||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||| |
Sbjct 1550 TAATCTCTGGGCCATCATCATGGATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACT 1609
Query 1907 GTCAACTGTCTTCCTTCACAAGGACTGGATTATGGAACAATGGGAAAAGAACTACTATAT 1966
||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GTCCTCGGTCTTCCTGCACAAGGACTGGATTATGGAACAATGGGAAAAGAACTACTATAT 1669
Query 1967 CAGTTCCATAGCTGGTTCAGATAACGGGAACTCATTAGTTGTTATGTCAAAAGGAACGTC 2026
|||||||||||||||| || |||| |||| ||| || ||||||||| | |||||||| ||
Sbjct 1670 CAGTTCCATAGCTGGTGCAAATAATGGGAGCTCGTTGGTTGTTATGGCTAAAGGAAC-TC 1728
Query 2027 -TTATACTCAGCAATCTTACAAAGTCAGCGACTCTTTTCCTTTCAAGTGGATAAACAAGA 2085
|||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| || |
Sbjct 1729 CTTATACCCAGCAATCATACAAAGTCAGCGACTCATTTCCATTCAAGTGGATAAATAA-A 1787
Query 2086 AA-TGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTG 2144
|| |||||||||| ||| |||||||| |||||||| || ||||||| ||||||||||||
Sbjct 1788 AAGTGGAAAGAAGGTTTTCATGTAACATCCATGACCACCGCTGGGAGTCGTTGGGGTGTA 1847
Query 2145 GTAATGTCGAGGAATTCTGGCTACTCTGATCAGGTCGTGGAGCTCGACTTTTTGTACCCA 2204
|||||||| ||||| || ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 1848 GTAATGTCCAGGAACTCGGGCTACTCTGAACAGGTGGTGGAGCTTGACTTTTTGTACCCA 1907
Query 2205 AGCGATGGAATACATAGGAGGTGGGAAAGTGGGTATAGGATAACATCAATGGCAGCAACT 2264
|| || ||||||||| | |||||||||||||| || ||||||||||||||||| |||||
Sbjct 1908 AGTGAAGGAATACATCGAAGGTGGGAAAGTGGATACAGGATAACATCAATGGCTGCAACA 1967
Query 2265 GCAGATCAAGCAGCT-TTCATATTAAGCGTACCAAAACGTAAAATGATGGATGAAACTCA 2323
|| |||||||||||| || ||||| || |||| ||||| ||||| | |||||||| ||
Sbjct 1968 GCTGATCAAGCAGCTCTT-ATATTGAGTATACCTAAACGAAAAATAACCGATGAAACCCA 2026
Query 2324 AGAGACTCTTCGCACCACCGCCTTTCCAAGCACTCATGTCAAGGAAAAATGGGCGAAAAA 2383
||||||||| ||||| | ||||| ||||| || ||||||||||| |||||||| |||||
Sbjct 2027 AGAGACTCTCCGCACTTCTGCCTTCCCAAGTACCCATGTCAAGGAGAAATGGGCAAAAAA 2086
Query 2384 TCTGTACATTGCATCAATATGCTTTGGGAGGACAGTTTGCTGA 2426
||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 2087 TCTGTACATTGCATCAATATGCTATGGTCGGACAGTTTGCTGA 2129
> Ahg340491 jgi|Araly1|340491|fgenesh1_pg.C_scaffold_3000254
Length=798
Score = 715 bits (387), Expect = 0.0
Identities = 587/683 (86%), Gaps = 15/683 (2%)
Strand=Plus/Plus
Query 1750 AGAGATATCACTACAACGTTGCAGACTCAAG-GTTGCATCAGCATGTACAGAAGGGTAAT 1808
|||| ||||| |||||||||||||||||||| ||||| |||||||| |||| ||||||
Sbjct 86 AGAGGTATCATTACAACGTTGCAGACTCAAGACTTGCA-CAGCATGTTGAGAAAGGTAAT 144
Query 1809 GAGGATGGCCTTTTAATTAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAATG 1868
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 145 GAGGATGGCCTTTTCGTAAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATCATG 204
Query 1869 GATGCTGGGACTGGATTCACCTCTCAAGTTTATGAATTGTCAACTGTCTTCCTTCACAAG 1928
|||||||||||||| |||| ||||||||||||||| |||| | |||||||| ||||||
Sbjct 205 GATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCGGTCTTCCTGCACAAG 264
Query 1929 GACTGGATTATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTTCAGAT 1988
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 265 GACTGGATTATAGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAAT 324
Query 1989 AACGGGAACTCATTAGTTGTTATGTCAAAAGGAACGTC-TTATACTCAGCAATCTTACAA 2047
|| |||| ||| || ||||||||| | |||||||| || |||||| |||||||| |||||
Sbjct 325 AATGGGAGCTCGTTGGTTGTTATGGCTAAAGGAAC-TCCTTATACCCAGCAATCATACAA 383
Query 2048 AGTCAGCGACTCTTTTCCTTTCAAGTGGATAAACAAGAAA-TGGAAAGAAGATTTCCATG 2106
||||||| |||| ||||| |||||||||||||| || ||| |||||||||| ||| ||||
Sbjct 384 AGTCAGCAACTCATTTCCATTCAAGTGGATAAATAA-AAAGTGGAAAGAAGGTTTTCATG 442
Query 2107 TAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCT 2166
|||| |||||||| || ||||||| |||||||| || |||||||| ||||| || ||||
Sbjct 443 TAACATCCATGACCACCGCTGGGAGTCGTTGGGAAGTAGTAATGTCCAGGAACTCAGGCT 502
Query 2167 ACTCTGATCAGGTCGTGGAGCTCGACTTTTTGTACCCAAGCGATGGAATACATAGGAGGT 2226
||||||| ||||| |||||||| |||||||||||||| || || ||||||||| | || |
Sbjct 503 ACTCTGAACAGGTGGTGGAGCTTGACTTTTTGTACCCCAGTGAAGGAATACATCGAAGAT 562
Query 2227 GGGAAAGTGGGTATAGGATAACATCAATGGCAGCAACTGCAGATCAAGCAGCTTTCATAT 2286
|||||||||| || ||||||||||||||||| ||||| || |||||| ||||||| ||||
Sbjct 563 GGGAAAGTGGATACAGGATAACATCAATGGCTGCAACAGCCGATCAAACAGCTTTTATAT 622
Query 2287 TAAGCGTACCAAAACGTAAAA-TGATGGATGAAACTCAAGAGACTCTTCGCACCACCGCC 2345
| || |||| ||||| |||| | | |||||||| ||||||| ||| ||||| | |||
Sbjct 623 TGAGTATACCTAAACG-AAAAGTAACCGATGAAACCCAAGAGATTCTCCGCACTTCTGCC 681
Query 2346 TTTCCAAGCACTCATGTCAAGGAAAAATGGGCGAAAAATCTGTACATTGCATCAATATGC 2405
|| ||||| || |||||||||| || | |||||||||||||||||||||||||||
Sbjct 682 TTCCCAAGTACCCATGTCAAGG------GG-CAAAAAATCTGTACATTGCATCAATATGC 734
Query 2406 TTTGGGAGGACAGTTTGCTGAGG 2428
| ||| ||||||||||||||||
Sbjct 735 TATGGTCGGACAGTTTGCTGAGG 757
> Ahg340552 jgi|Araly1|340552|fgenesh1_pg.C_scaffold_3000315
Length=867
Score = 551 bits (298), Expect = 1e-155
Identities = 587/725 (81%), Gaps = 26/725 (4%)
Strand=Plus/Plus
Query 1713 TGGATCTCAGTCTATAATGCTCGTCGTCCCATGAAACAGAGATATCACT-ACAACGTTGC 1771
||||| ||||||||||| |||| ||| ||||||||||||| ||| | ||||||| ||
Sbjct 154 TGGATTTCAGTCTATAACAAACGTCCTCCTATGAAACAGAGATTTCA-TCACAACGTAGC 212
Query 1772 AGACTCAAGGTTGCATCAGCATGTACAGAAGGGTAATGAGGATGGCCTTTTAATTAGCTG 1831
| | ||||||||||| || |||||| |||| | ||| | ||||||||||| || |||||
Sbjct 213 AAATTCAAGGTTGCACCATCATGTAGAGAAAGCTAACAATGATGGCCTTTTTATAAGCTG 272
Query 1832 TGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAATGGATGCTGGGACTGGATTCACCTC 1891
||||||||||| ||||||||| ||||| || | ||||| |||||||| ||||| ||
Sbjct 273 TGTAGCATCAGAAGCTAATCTATGGGCATTCGTCGTGGATAAAGGGACTGGTTTCACTTC 332
Query 1892 TCAAGTTTATGA-A-TTGTCAACTGTCTTCCTTCACAAGGACTGGATTATGGAACAATGG 1949
|||||||||| | | || || | | |||||| | |||||||||||||||| ||||||||
Sbjct 333 TCAAGTTTAT-ACAGTTATC-TCAGCCTTCCTCCCCAAGGACTGGATTATGAAACAATGG 390
Query 1950 GAAAAGAACTACTATATCAGTTCCATAGCTGGTTCAGATAACGGGAACTCATTAGTTGTT 2009
|| |||||||||||||||||||||||||||||| || |||| ||| ||| || || |||
Sbjct 391 GAGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGGGCTCGTTGGTCGTT 450
Query 2010 ATGTCAAAAGGAACGTCTT-ATACTCA-GCAATCTTACAAAGTCAGCGACTCTTTTCCTT 2067
|||||||||||||| |||| |||| || |||||| |||||| |||| |||| |||| |
Sbjct 451 ATGTCAAAAGGAAC-TCTTTATAC-CAAGCAATCATACAAAACCAGCCACTCAATTCCAT 508
Query 2068 TCAAGTGGATAAACAAGAAA-TGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCT 2126
| |||||||| | || ||| |||||||||| ||| |||||||| |||||||| ||||||
Sbjct 509 TAAAGTGGATGGATAA-AAAGTGGAAAGAAGGTTTTCATGTAACATCCATGACCACTGCT 567
Query 2127 GGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGGTCG-TGGA 2185
|||| | |||||||||| |||||||| ||||| || |||| |||||| ||||| | ||||
Sbjct 568 GGGAGTGGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTTCTCTGAACAGGT-GATGGA 626
Query 2186 GCTCGACTTTTTGTACCCAAGCGATGGA-ATACATAGGAGGTGGGAAAGTGGGTATAGGA 2244
||| ||||| ||| ||||||| || | | ||| || | |||| ||| ||||| || ||||
Sbjct 627 GCTTGACTTCTTGAACCCAAGTGAAG-ATATAAATCGAAGGTTGGAGAGTGGATACAGGA 685
Query 2245 TAACATCAATGGCAGCAACTGCAGATCAAGCAGCT-TTCATATTAAGCGTACCAAAACGT 2303
||||||||||||| ||||| || |||||||||||| || ||||| || |||| |||||
Sbjct 686 TAACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTT-ATATTGAGTATACCCAAACGA 744
Query 2304 AAAATGATGGATGAAACTC-AAGAGACTCTT-CGCACCACCGCCTTTCCAAGCAC-TCAT 2360
||||| | ||||||| || |||||||| || || || | |||| || ||| | | ||
Sbjct 745 AAAATAACCGATGAAA-TCCAAGAGACT-TTACGTACTTCTTCCTTCCCTAGCTCCT-AT 801
Query 2361 GTCAAGGAAAAATGGGCGAAAAATCTGTACATTGCATCAATATGCTT-TGGGAGGACAGT 2419
||||||| ||||||| ||||||| ||| ||| |||||||||| || ||| |||||||
Sbjct 802 ATCAAGGACAAATGGGAGAAAAATATGTTCATAACATCAATATG-TTATGGTCGGACAGT 860
Query 2420 TTGCT 2424
|||||
Sbjct 861 TTGCT 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100862968760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5