BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18200.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488687 jgi|Araly1|488687|fgenesh2_kg.6__1821__AT5G18200.1 1775 0.0
> Ahg488687 jgi|Araly1|488687|fgenesh2_kg.6__1821__AT5G18200.1
Length=1245
Score = 1775 bits (961), Expect = 0.0
Identities = 1174/1273 (92%), Gaps = 30/1273 (2%)
Strand=Plus/Plus
Query 1 GCACAAGTGTCGCAGCTACAGAGCACACAAAAGAAGGAGAGAAAGATGACGTCACCGAGC 60
|||||||||||| ||||||||| |||||||| | || ||| |||||||||||||||
Sbjct 1 GCACAAGTGTCGAAGCTACAGA--TCACAAAAG-A--AGCGAACGATGACGTCACCGAGT 55
Query 61 CATGCCTCTGATCGCGGCGGCGGCGACGGTGACTCAGTCGAGAATCAGTCCCCTGAGCTC 120
|||||| |||||||||||||| ||||||| ||||| ||||||||||| || || ||||||
Sbjct 56 CATGCCCCTGATCGCGGCGGCAGCGACGGCGACTCGGTCGAGAATCAATCTCCGGAGCTC 115
Query 121 AGGAAAGATCCGGTAACTAACCGCTGGGTCATATTCTCTCCCGCCAGAGCCAAGAGACCG 180
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 116 AGGAAGGATCCGGTAACTAACCGCTGGGTCATATTCTCTCCCGCCCGAGCCAAGAGACCG 175
Query 181 ACTGATTTCAAATCCAAATCTCCCCAGAACCCTAATCCCAAACCTTCCTCATGCCCATTT 240
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 176 ACTGATTTCAAATCCAAATCTCCCCAGAACCCTAATCCTAAACCTTCCTCGTGCCCCTTT 235
Query 241 TGCATCGGTCGTGAGCAAGAGTGTGCCCCGGAGTTATTTCGTGTGCCAGATCATGACCCG 300
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 236 TGCATCGGTCGTGAGCAAGAGTGTGCTCCGGAGATATTTCGTGTGCCAGATCATGACCCG 295
Query 301 AATTGGAAACTCCGGGTCATCGAGAATCTGTACCCGGCTCTTAGTAGGAATCTCGAGACC 360
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 296 AATTGGAAACTCCGGGTCATCGAGAATCTCTACCCGGCTCTAAGTAGGAATCTCGAGACC 355
Query 361 CAATCGACCCAA-CCTGAGACGGGAACAAGTCGGACAATAGTCGGATTCGGATTCCACGA 419
||| ||| ||| | |||||||| || ||||||| |||||||||||||||||||||||
Sbjct 356 CAAGCGAAGCAAGGC-GAGACGGGTACGGGTCGGACTATAGTCGGATTCGGATTCCACGA 414
Query 420 CGTAGTGATCGAATCCCCTGTTCATTCGATTCAGCTCTCCGATATCGATCCGGTGGGTAT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CGTGGTGATCGAATCCCCTGTTCATTCGATTCAGCTCTCCGATATCGATCCGGTGGGTAT 474
Query 480 CGGCGATATCTTGATCGCTTATAAGAAGAGGATCAATCAGATTGCGCAACATGATTCCAT 539
||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 475 CGGCGATGTCTTGATCGCGTATAAGAAGAGGATCGATCAGATTGCGCAACATGATTCCAT 534
Query 540 CAATTACATCCAGGTTTTCAAGAACCAAGGTGCGTCGGCTGGAGCATCAATGAGTCACTC 599
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 CAATTACATTCAGGTTTTCAAGAACCAGGGTGCGTCGGCTGGAGCATCAATGAGTCACTC 594
Query 600 CCACAGTCAAATGATGGCTCTACCAGTTGTTCCTCCAACGGTTTCTTCACGCCTTGATGG 659
||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 595 CCACAGTCAGATAATGGCTCTTCCAGTTGTTCCTCCAACAGTTTCTTCACGCCTTGATGG 654
Query 660 TACTAAAGATTATTTCGAGGAGACTGGGAAATGTTGTCTCTGTGAAGCTAAATCAAAACA 719
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 655 TACTAAAGATTATTTCGACGAGACTGGGAAATGTTGTCTTTGTGAAGCTAAATCAAAACA 714
Query 720 TTTTGTGATCGATGAGTCGTCTCATTTTGTTTCTGTTGCTCCTTTTGCTGCTACGTATCC 779
||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct 715 TTTTGTGATCGATGAGTCGTCCCATTTTGTTTCCGTTGCCCCTTTCGCTGCTACATATCC 774
Query 780 CTTTGAGATTTGGATTATTCCGAAAGATCATTCTTCCCACTTCCATCATCTCGATGACGT 839
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 775 CTTTGAGATTTGGATTATTCCCAAGGATCATTCTTCCCATTTCCATCATCTCGATGACGT 834
Query 840 TAAGGCTGTTGACCTTGGAGGACTTCTGAAACTCATGCTTCAGAAGATAGCAAAGCAACT 899
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 835 CAAGGCTGTTGACCTTGGAGGACTTCTGAAACTCATGCTTCAAAAGATAGCAAAGCAACT 894
Query 900 TAACGATCCACCGTATAACTATATGATCCATACTTCTCCACTCAAGGTTACAGAATCACA 959
||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 895 TAACGATCCCCCGTATAATTATATGATCCATACTTCTCCCCTCAAGGTCACAGAATCACA 954
Query 960 ATTACCTTATACGCACTGGTTCTTACAGATTGTACCTCAGCTTTCTGGGGTAGGTGGGTT 1019
| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 955 ACTACCTTATACGCACTGGTTCTTACAGATTGTACCGCAGCTCTCTGGGGTAGGCGGGTT 1014
Query 1020 TGAGATTGGCACAGGTTGTTACATAAACCCTGTTTTCCCAGAGGATGTAGCAAAGGTTAT 1079
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1015 TGAGATTGGCACAGGTTGTTACATAAACCCAGTTTTCCCAGAGGATGTGGCAAAGGTTAT 1074
Query 1080 GCGGGAAGTTAGCCTTACTTGAACCCGGTTTTTTAGTCTCAACCTAAAGTTCAGCTGGAA 1139
|||||||||||||||||||||||||||| |||||||| |||| | ||| | ||
Sbjct 1075 GCGGGAAGTTAGCCTTACTTGAACCCGGGTTTTTAGTGTCAA---A---TTC-G-TGT-- 1124
Query 1140 GTGATTAGTGTTGAGTTATTGGCCTAATGTGCAAGTCTCTAAAAAACACTATTCAATTGT 1199
||| || | | || ||||||||||||| ||||||| ||||||||||||| | ||
Sbjct 1125 -TGA---GT-T-G--TT---GGCCTAATGTGCAGGTCTCTAGAAAACACTATTCACT-GT 1172
Query 1200 CTTTTT-CTCCTCTGTTGAAGAGGAAGATGTTTCAGCTTGATTCAAATAACACTGATGTA 1258
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1173 CTTTTTTCTCCTCTGTTGAAGAGGAGGATGTTTCAGCTTGATTCAAATAACACTGTTGTA 1232
Query 1259 AACAATGCATGTA 1271
|||||||||||||
Sbjct 1233 AACAATGCATGTA 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5