BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18210.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893741 jgi|Araly1|893741|Al_scaffold_0006_1737 1640 0.0
Ahg941343 jgi|Araly1|941343|scaffold_601887.1 1096 0.0
Ahg340560 jgi|Araly1|340560|fgenesh1_pg.C_scaffold_3000323 667 0.0
> Ahg893741 jgi|Araly1|893741|Al_scaffold_0006_1737
Length=1473
Score = 1640 bits (888), Expect = 0.0
Identities = 1017/1081 (94%), Gaps = 2/1081 (0%)
Strand=Plus/Minus
Query 829 TCATAGTGCTGTAAAGAGTAGCAACATACTCACCAGAGAGAAGCTGATAAACCGGTGGTT 888
||||||||| ||||||||||||||||||||||||||| |||| ||| |||| |||||
Sbjct 1473 TCATAGTGCCATAAAGAGTAGCAACATACTCACCAGAGCCAAGCCGATGAACCTATGGTT 1414
Query 889 ATGATCACTATGTCCGGATGTTGGATCTCCGATTTGAATAGGAAAATTACACTGTTCTCG 948
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 ATGATCACTATGTCCCGATGTTGGATCTCCGATTTGAATAGGAAAATTACACTGTTCTCG 1354
Query 949 AGAAATATTCCTGGTAGTGATAATTGCAAGGCCCTCAAAGTCACAAGCCTCTGCCTTTTG 1008
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1353 AGAAATATTCCGGGTAGTGATAATCGCAAGGCCCTCAAAGTCACAAGCCTCTGCCTTCTG 1294
Query 1009 ATTCTGTACCTGAAAATACATGTTGAATGCATACGAGGCATTCCCGACCTCATCAAGATT 1068
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1293 ATTCTGCACCTGAAAATACATGTTGAATGCATACGACGCATTCCCGACCTCATCGAGATT 1234
Query 1069 ACCACAAGAGGAACCATAGCCCAAAGCTGTGCAGTCGGAGAAGGTACATGCGTAGTTTAC 1128
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1233 ACCACAAGAGGAACCATACCCCAAAGCTGTGCAGTCAGAGAAGGTACACGCGTAGTTTAC 1174
Query 1129 GTTATCCCCGAGCTGGTTAGTGTTGTTGCTGAAAGTGAGGGCATTAGGGTTGAACATACA 1188
||||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||
Sbjct 1173 GTTATCCCCGAGCTGGTTAGTGTTGTTACTGAAAGTGAGGCCATCCGGGTTTAACATACA 1114
Query 1189 CCACTGGTTTCGCAAGTACTGAACATTTTGAGCTCCGGTTAAGATCTTCTTCTGACCTGC 1248
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CCACTGGTTTTGCAAGTACTGAACATTTTGAGCTCCGGTTAAGATCTTCTTCTGACCTGC 1054
Query 1249 TCCTGACAAATCCGCTGGAAATTTCGGTTGGCCATCGTATTTGAATATCCCCCAGTGACG 1308
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1053 CCCTGACAAATCCGCTGGAAATTTTGGCTGGCCATCGTATTTGAATATCCCCCAGTGACG 994
Query 1309 TTCAAAGTTACCAGGAGCTATACTCTTTGCATCTTCATCGATGAATCCAAAGAGATAAAC 1368
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 993 TTCAAAGTTACCAGGAGCTATACTCTTTGCATCTTCATCAATGAATCCGAAGAGATAAAC 934
Query 1369 TTCAATGTAACCCGGACGCATAGGTGTTCCTCTGTTGGCTGCTAGCTTTGGAAGCAAACC 1428
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 933 TTCAATGTAACCTGGACGCATAGGTGTTCCTCTGTTGGCTGCTAGCTTCGGAAGCAGACC 874
Query 1429 TGTGTAGAAGCGTTCTGCGTTTGGGATGTTAGCATTCTTGTCACCATCCGTTGGCCAACC 1488
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 873 TGTGTAGAAGCGTTCTGCGTTTGGGATATTAGCGTTCTTGTCACCATCCGTTGGCCAACC 814
Query 1489 AACTTCTCCAACTATAACAGTCATGTCTCCATGACCCAAAGCTTTAAGTGAAGCCAAGAG 1548
|||||||||||||||||| | |||||||||||||||||| |||||||| |||||||| ||
Sbjct 813 AACTTCTCCAACTATAACTGACATGTCTCCATGACCCAATGCTTTAAGCGAAGCCAATAG 754
Query 1549 GGTATCGAAATTGGCGTCGAAA-ACATTTGTATAGATAACGCCGTTATCGCTGACAGTGT 1607
||||||||||||||| || ||| || ||||| |||||||| || ||||| || || ||||
Sbjct 753 GGTATCGAAATTGGCATC-AAAGACGTTTGTGTAGATAACACCATTATCACTAACGGTGT 695
Query 1608 TTTGGCCATTGAAGAAGGCATAGTCAAAAGGGAAATCGCTGCTAAGGTAAAGACTTAGGA 1667
| |||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||||
Sbjct 694 TCTGGCCATTAAAGAAGGCGTAGTCGAAAGGGAAGTCGCTGCTGAGGTAAAGACTTAGGA 635
Query 1668 AAGGGTAAATGTTGACAGTGAAGGGAGCTTTGTTATGAGCTAAGAAGTTGACTATTAGTT 1727
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 634 AAGGGTAAATGTTGACAGTGAAGGGAGCTTTGTTATGAGCCAAGAAGTTGACTATGAGTT 575
Query 1728 TCATCTCTTCAAAGATGTCTTGACGGAAACTTCCGGCAGAAGGAACTGGATTTTCCAGCG 1787
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 574 TCATCTCTTCAAAGATGTCTTGTCGGAAACTTCCGGCGGAAGGAACTGGATTTTCCAGCG 515
Query 1788 GAGAATTATAGACGTCAGCGTTTAAAGGTACGGTGGCTTTGATGAAATCTCCAACTCCAG 1847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 514 GAGAATTATAGACGTCAGCGTTTAAAGGTACGGTGGCTTTGATGAAATCTCCAACTCCGG 455
Query 1848 CTTCGTTTAATGCTTTTTGGATGTTGAAGAGTGCTGGATAAGTTAAGTTTATGAATGATC 1907
|||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 454 CTTCGTTTAATGCTTTCTGGATGTTGAAGAGTGCTGGATAAGTTAGGTTAAGGAATGATC 395
Query 1908 C 1908
|
Sbjct 394 C 394
> Ahg941343 jgi|Araly1|941343|scaffold_601887.1
Length=837
Score = 1096 bits (593), Expect = 0.0
Identities = 685/731 (94%), Gaps = 0/731 (0%)
Strand=Plus/Plus
Query 4 GCTTCCTCAGTCTCCTCTCTCGCCGGACGAGTCGCGATAGTCACCGGTTCTTCTCGCGGA 63
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 35 GCTTCGTCAGTTTCCTCTCTCGCCGGCCGAGTCGCGATAGTCACCGGTTCTTCTCGCGGA 94
Query 64 ATCGGCCGAGCTATAGCCATACATCTCGCCGAGCTCGGCGCCAAGATAGTCATCAACTAC 123
||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 95 ATCGGCCGAGCCATAGCCATACACCTCGCCGAGCTCAGCGCCAAGATAGTCATCAACTAC 154
Query 124 ACCACCAGATCCACCGAGGCCGATCAAGTCGCCGCAGAAATCAACTCATCCGCCGGCACC 183
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 155 ACCACTAGATCCACCGAGGCCGATCAAGTCGCCGCGGAAATCAACTCATCTGCCGGCGCC 214
Query 184 GTTCCGCAACCGATCGCCGTCGTGTTCCTCGCCGATATCTCAGAACCAAGCCAAATTAAG 243
| |||| ||||||| ||| |||| |||| ||||||||||||||| |||||||| | |||
Sbjct 215 GGTCCGGAACCGATAGCCTTCGTATTCCGCGCCGATATCTCAGAGCCAAGCCAGGTCAAG 274
Query 244 TCTCTCTTCGACGCGGCGGAGAAAGCCTTTAACTCGCCGGTTCACATCCTAGTTAACTCA 303
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 275 TCTCTCTTCGACGCGACGGAGAAAGCTTTTAACTCGCCGGTTCACATCCTGGTTAACTCA 334
Query 304 GCTGGAATCCTCAATCCCAATTACCCTACCATCGCCAACACTCCCATTGAAGAATTCGAT 363
||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||| ||||||
Sbjct 335 GCTGGAATCCTCAATCCTAATTATCCTACCATCGCTAACACTCCCATTGCAGATTTCGAT 394
Query 364 CGCATCTTCAAGGTGAACACAAGAGGATCATTCTTATGCTGTAAAGAAGCAGCAAAAAGG 423
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 395 CGCATCTTCAAGGTGAACACAAGAGGATCATTCTTGTGCTGTAAAGAAGCTGCTAAAAGG 454
Query 424 CTAAAACGTGGAGGCGGTGGTAGGATTATACTGCTAACGTCGTCGTTAACCGAGGCGTTA 483
||||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||
Sbjct 455 CTAAAACGTGGAGGCGGTGGTCGGATTATAATGCTAACCTCGTCTTTAACCGAGGCGTTA 514
Query 484 ATCCCGGGGCAAGGAGCTTATACAGCATCAAAGGCAGCTGTTGAAGCAATGGTGAAGATT 543
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 515 ATCCCGGGGCAAGGAGCTTATACAGCATCAAAGGCTGCTGTTGAAGCAATGGTGAAGATT 574
Query 544 CTTGCTAAGGAACTTAAAGGTTTAGGCATCACTGCAAACTGTGTATCTCCAGGGCCTGTT 603
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 575 CTTGCTAAGGAACTTAAAGGTTCAGGAATCACTGCAAACTGTGTTTCTCCAGGGCCTGTT 634
Query 604 GCGACGGAGATGTTTTTTGACGGGAAGAGTGAAGAGACGGTGATGAATATCATTGAGAGG 663
|||||||||||||| || ||||||||||| || |||||||||| ||||||||| ||||||
Sbjct 635 GCGACGGAGATGTTCTTCGACGGGAAGAGCGAGGAGACGGTGAGGAATATCATCGAGAGG 694
Query 664 AGTCCTTTTGGTAGGCTTGGTGAGACTAAAGATATTGCTTCTGTTGTTGGTTTCTTAGCT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AGTCCTTTTGGTAGGCTTGGTGAGACTAAAGATATTGCTTCTGTTGTTGGTTTCTTAGCT 754
Query 724 AGTGATGGTGG 734
||||| |||||
Sbjct 755 AGTGACGGTGG 765
> Ahg340560 jgi|Araly1|340560|fgenesh1_pg.C_scaffold_3000323
Length=1482
Score = 667 bits (361), Expect = 0.0
Identities = 809/1020 (79%), Gaps = 51/1020 (5%)
Strand=Plus/Minus
Query 910 TGGATCTCCGATTTGAATAGGAAAATTACACTGTTCTCGAGAAATATTCCTG-GTAGTGA 968
||| ||||| || ||||| || |||||||| ||| || |||||||||| || ||||| |
Sbjct 1392 TGGCTCTCCAATCTGAATCGGGAAATTACATTGTCCTTGAGAAATATT-TTGAGTAGTAA 1334
Query 969 TAATTGCAAGGCCC-TCAAAGTCACAAGCCTCTGCCTT-TTGATTCTGTACCTGAAAATA 1026
| |||||| |||| ||||| || || |||| | ||| ||||| || || || |||||
Sbjct 1333 TCGTTGCAA-GCCCTTCAAAATCGCACGCCTGAG-CTTCCTGATTTTGCACTTGGAAATA 1276
Query 1027 CATGTTGAATGCATACGAGGCATTCCCGA-CCTCATCAAGATTACCACAAGAGGAACCAT 1085
||| || || || || || || || || | | |||||||||| ||||||||||| || |
Sbjct 1275 CATATTAAACGCGTAAGATGCGTTTCC-ATTCGCATCAAGATTGCCACAAGAGGATCCGT 1217
Query 1086 AGCCCAAAGCTGTGCAGTCGGAGAAG-GTACATGCGTAGTTTACGTTATCCCCGAGCTGG 1144
| || ||||| || ||||| || | | | ||| |||||||||| |||||| || | ||
Sbjct 1216 AACCTAAAGCAGTACAGTCCGA-ATGCGAACACGCGTAGTTTATGTTATCTCC-A--AGG 1161
Query 1145 TTAGTGTTGTTGCTGAAAGTGAGGGCATTAGGGTTGAACATACACCACTGGTTTC-GCAA 1203
|| | | || | | || ||||||| || ||||||||||||||| ||| ||||
Sbjct 1160 CTACTCATATTAC---CA---CGGCCATTAGGATTAAACATACACCACTGG-TTCAGCAA 1108
Query 1204 GTACTGAACATTTTGAGCTCCGGTTAAGATCTTCTTCTGACC-TGCTCCTGACAAATCCG 1262
||||||||| ||||||||||||||||||| ||| |||||||| ||| || || |||||
Sbjct 1107 GTACTGAACGTTTTGAGCTCCGGTTAAGAACTTTTTCTGACCTTGCCCCCGA-AAATCTA 1049
Query 1263 CTGGAAATTTCGGTTGGCCATCGTATTTGAATATCCCCCAGTGACGTTC-AAAGTTACCA 1321
| || ||||||||||||||||| |||||||||||||||| |||||||| ||| || ||
Sbjct 1048 CCGGGAATTTCGGTTGGCCATCAAATTTGAATATCCCCCAATGACGTTCGAAA-TTCCCC 990
Query 1322 GGAGCTATACTC-TTT-GCATCTTCATCGATGAATCC-AAAGAGATAAACTTCAATGTAA 1378
|| || | || | ||| ||||||||||||| ||||| ||| |||||||| |||||||||
Sbjct 989 GGGGC-A-ACGCTTTTCACATCTTCATCGATAAATCCGAAA-AGATAAACCTCAATGTAA 933
Query 1379 CCCGGACGCATAGGTGTTCCT-CTGTTGGCT-GCTAGCTTTGGAAGCAAACCTGTGTAGA 1436
|| ||||||||| |||||| | ||| | | || | | ||||||||||| | || |
Sbjct 932 CCTTTACGCATAGGAGTTCCTAC-GTT-GTTCGCCAACCGCGGAAGCAAACCGGAATAAA 875
Query 1437 AGCGTTCTGCGTTTGGGATGTTAGCATTCTTGTCACCATCCGTTGGCCAACCAACTTCTC 1496
| ||||| |||||| | | ||| || ||||||||||||||||| ||||||||||||||||
Sbjct 874 ACCGTTCCGCGTTTTGAACGTTTGCGTTCTTGTCACCATCCGTAGGCCAACCAACTTCTC 815
Query 1497 CAACTATAACAGT-CATGTCT-CCATGACCCAAAGC-TTTAAGTGAAGCCAAGAGGGTAT 1553
|||| || || | ||||| | || ||| ||| || ||||| ||||| || || || |
Sbjct 814 CAACGATCAC-TTCCATGT-TACCGTGATTCAACGCGTTTAA-AGAAGCTAAAAGCGTGT 758
Query 1554 CGAAATTGGCGTCGAAAACATTTGTATAGATAACGCCGTTATCGCTGACAGTGTTTTGGC 1613
||||||| |||||||| || ||||| |||| ||||||||| || | || ||||||||||
Sbjct 757 CGAAATTAGCGTCGAAGACGTTTGTGTAGACAACGCCGTTGTCATTAACGGTGTTTTGGC 698
Query 1614 CATTGAAGAAGGCATAGTCAAAAGGGAAA-TCGCTGC-TAAGGTAAAGACTTAGGAAAGG 1671
| | ||||| || || || ||| ||||| || |||| ||| ||| ||||| ||||||||
Sbjct 697 CGTCAAAGAAAGCGTAATCGAAA-GGAAAGTCACTGCTTAA-GTAGAGACTGAGGAAAGG 640
Query 1672 GTAAATGTTGACAGTGAAGGGAGCTTTGTTATGAGCTAAGAAGTTGACTATTAGTTTCAT 1731
|||||||||||| ||||||||||||||||| || || | |||||| || ||| || ||||
Sbjct 639 GTAAATGTTGACGGTGAAGGGAGCTTTGTTCTGTGCGAGGAAGTTAACGATTTGTGTCAT 580
Query 1732 CTCTT-CAAAGATGTCTTG-ACGGAAACTTCCGGCAGAAGGAAC-TGGATTTTCCAGCGG 1788
|||| | | ||||| | |||||| |||||||| || || || ||| || ||| | ||
Sbjct 579 TTCTTGGATA-ATGTC-GGAACGGAATCTTCCGGCGGATGGGACTTGG-TTGTCCGGAGG 523
Query 1789 AGAATTATAGACGTCAGCGTTTAAAGGTACGGTGGCTTTGATGAAATCTCCAACTCCAGC 1848
|||||| || ||||| ||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 522 AGAATTGTAAACGTCGGCGTTTAAAGGAACGGTGGCTTTGGTGAAATCACCAACTCCAGC 463
Query 1849 TTCGTTTAATGCTTTTTGGATGTTGAAGAGTGCTGGATAAGTTAAGTTTATGAATGATCC 1908
||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 462 TTCGTTTAAAGCGGTTTGGATGTTGAAGAGTGCTGGATAAGTTAGGTTTATGAATGATCC 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5