BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18220.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893741 jgi|Araly1|893741|Al_scaffold_0006_1737 2261 0.0
Ahg340560 jgi|Araly1|340560|fgenesh1_pg.C_scaffold_3000323 889 0.0
> Ahg893741 jgi|Araly1|893741|Al_scaffold_0006_1737
Length=1473
Score = 2261 bits (1224), Expect = 0.0
Identities = 1392/1474 (94%), Gaps = 8/1474 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAACCGACGGAAACAGAGCACCACTGCCGGCATCTTCCTCTGCATCACCA--T-- 56
||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 1 ATGAGTAACCGACGGAAACAGAGCACCACTGTCGGCATCTTCCTATGCATCACCATCTCC 60
Query 57 A--GTATCTTTATTATCCGGCGACGTCTCCGCCTTGGGAGTAAACTGGGGAACGATGTCA 114
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 ACCTTATCTTTATTATCCGGCGACGTCTCCGCCTTGGGAGTAAACTGGGGAACGATGGCA 120
Query 115 ACTCACCAGCTCCCTCCAAAGACGGTGGTACAGATGTTAAAAGACAACAACGTCAAAAAA 174
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 121 ACTCACCAGCTCCCTCCAAAGACGGTGGTACAGATGTTAAAAGACAACAACGTTAGAAAA 180
Query 175 GTGAAGCTTTTCGATGCGGACACAAACACCATGGTAGCTCTTGCCGGCTCTGGTATCGAA 234
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTGAAGCTTTTCGATGCGGACACAAACACCATGGTAGCTCTTGCCGGCTCCGGTATCGAA 240
Query 235 GTTATGGTTGCAATCCCTAACGATCAGCTCAAAGCCATGGGAAGTTATAACAGAGCTAAA 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GTTATGGTTGCAATCCCTAACGATCAGCTCAAAGCCATGGGAAGCTATAACAGAGCTAAA 300
Query 295 GATTGGGTTCGAAGAAACATCACTCGTTTCAATGACGATGTTAAAATCAAATATGTCGCC 354
|||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||
Sbjct 301 GATTGGGTTCGAAGAAACATCACTCGTTTCAACGATGACGTTAAAATCAAATACGTCGCC 360
Query 355 GTTGGAAATGAGCCGTTTTTGACAGCTTATAATGGATCATTCATAAACTTAACTTATCCA 414
|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 361 GTTGGAAATGAGCCGTTTTTGACAGCTTATAATGGATCATTCCTTAACCTAACTTATCCA 420
Query 415 GCACTCTTCAACATCCAAAAAGCATTAAACGAAGCTGGAGTTGGAGATTTCATCAAAGCC 474
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GCACTCTTCAACATCCAGAAAGCATTAAACGAAGCCGGAGTTGGAGATTTCATCAAAGCC 480
Query 475 ACCGTACCTTTAAACGCTGACGTCTATAATTCTCCGCTGGAAAATCCAGTTCCTTCTGCC 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 ACCGTACCTTTAAACGCTGACGTCTATAATTCTCCGCTGGAAAATCCAGTTCCTTCCGCC 540
Query 535 GGAAGTTTCCGTCAAGACATCTTTGAAGAGATGAAACTAATAGTCAACTTCTTAGCTCAT 594
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 541 GGAAGTTTCCGACAAGACATCTTTGAAGAGATGAAACTCATAGTCAACTTCTTGGCTCAT 600
Query 595 AACAAAGCTCCCTTCACTGTCAACATTTACCCTTTCCTAAGTCTTTACCTTAGCAGCGAT 654
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 AACAAAGCTCCCTTCACTGTCAACATTTACCCTTTCCTAAGTCTTTACCTCAGCAGCGAC 660
Query 655 TTCCCTTTTGACTATGCCTTCTTCAATGGCCAAAACACTGTCAGCGATAACGGCGTTATC 714
|||||||| ||||| |||||||| |||||||| ||||| || || ||||| || ||||||
Sbjct 661 TTCCCTTTCGACTACGCCTTCTTTAATGGCCAGAACACCGTTAGTGATAATGGTGTTATC 720
Query 715 TATACAAATGT-TTTCGACGCCAATTTCGATACCCTCTTGGCTTCACTTAAAGCTTTGGG 773
|| ||||| || ||| || ||||||||||||||||| |||||||| |||||||| |||||
Sbjct 721 TACACAAACGTCTTT-GATGCCAATTTCGATACCCTATTGGCTTCGCTTAAAGCATTGGG 779
Query 774 TCATGGAGACATGACTGTTATAGTTGGAGAAGTTGGTTGGCCAACGGATGGTGACAAGAA 833
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCATGGAGACATGTCAGTTATAGTTGGAGAAGTTGGTTGGCCAACGGATGGTGACAAGAA 839
Query 834 TGCTAACATCCCAAACGCAGAACGCTTCTACACAGGTTTGCTTCCAAAGCTAGCAGCCAA 893
||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 840 CGCTAATATCCCAAACGCAGAACGCTTCTACACAGGTCTGCTTCCGAAGCTAGCAGCCAA 899
Query 894 CAGAGGAACACCTATGCGTCCGGGTTACATTGAAGTTTATCTCTTTGGATTCATCGATGA 953
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 900 CAGAGGAACACCTATGCGTCCAGGTTACATTGAAGTTTATCTCTTCGGATTCATTGATGA 959
Query 954 AGATGCAAAGAGTATAGCTCCTGGTAACTTTGAACGTCACTGGGGGATATTCAAATACGA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGATGCAAAGAGTATAGCTCCTGGTAACTTTGAACGTCACTGGGGGATATTCAAATACGA 1019
Query 1014 TGGCCAACCGAAATTTCCAGCGGATTTGTCAGGAGCAGGTCAGAAGAAGATCTTAACCGG 1073
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 TGGCCAGCCAAAATTTCCAGCGGATTTGTCAGGGGCAGGTCAGAAGAAGATCTTAACCGG 1079
Query 1074 AGCTCAAAATGTTCAGTACTTGCGAAACCAGTGGTGTATGTTCAACCCTAATGCCCTCAC 1133
||||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||
Sbjct 1080 AGCTCAAAATGTTCAGTACTTGCAAAACCAGTGGTGTATGTTAAACCCGGATGGCCTCAC 1139
Query 1134 TTTCAGCAACAACACTAACCAGCTCGGGGATAACGTAAACTACGCATGTACCTTCTCCGA 1193
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1140 TTTCAGTAACAACACTAACCAGCTCGGGGATAACGTAAACTACGCGTGTACCTTCTCTGA 1199
Query 1194 CTGCACAGCTTTGGGCTATGGTTCCTCTTGTGGTAATCTTGATGAGGTCGGGAATGCCTC 1253
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1200 CTGCACAGCTTTGGGGTATGGTTCCTCTTGTGGTAATCTCGATGAGGTCGGGAATGCGTC 1259
Query 1254 GTATGCATTCAACATGTATTTTCAGGTACAGAATCAAAAGGCAGAGGCTTGTGACTTTGA 1313
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1260 GTATGCATTCAACATGTATTTTCAGGTGCAGAATCAGAAGGCAGAGGCTTGTGACTTTGA 1319
Query 1314 GGGCCTTGCAATTATCACTACCAGGAATATTTCTCGAGAACAGTGTAATTTTCCTATTCA 1373
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGGCCTTGCGATTATCACTACCCGGAATATTTCTCGAGAACAGTGTAATTTTCCTATTCA 1379
Query 1374 AATCGGAGATCCAACATCCGGACATAGTGATCATAACCACCGGTTTATCAGCTTCTCTCT 1433
|||||||||||||||||| |||||||||||||||||||| |||| ||| |||| ||||
Sbjct 1380 AATCGGAGATCCAACATCGGGACATAGTGATCATAACCATAGGTTCATCGGCTTGGCTCT 1439
Query 1434 GGTGAGTATGTTGCTACTCTTTACAGCACTATGA 1467
||||||||||||||||||||||| |||||||||
Sbjct 1440 GGTGAGTATGTTGCTACTCTTTATGGCACTATGA 1473
> Ahg340560 jgi|Araly1|340560|fgenesh1_pg.C_scaffold_3000323
Length=1482
Score = 889 bits (481), Expect = 0.0
Identities = 1070/1348 (79%), Gaps = 65/1348 (5%)
Strand=Plus/Plus
Query 70 TCCGGCGACGTCTCCGCCTTGGGAGTAAACTGGGGAACGATGTCAACTCACCAGCTCCCT 129
||||||| ||||| | |||||||||||||||||||| ||| | ||||| ||| | ||
Sbjct 79 TCCGGCGGGGTCTCTGGTTTGGGAGTAAACTGGGGAACAATGGCGACTCATCAGTTACCA 138
Query 130 CCAAAGACGGTGGTACAGATG-TTAAAAGACAACAACGTCA-AAAAAGTGAAGCTT-TTC 186
|| ||||||||||| | ||| || ||||||||||| | | | ||||||||| || |||
Sbjct 139 CCGAAGACGGTGGTGGAAATGCTT-AAAGACAACAATAT-ACAGAAAGTGAAG-TTGTTC 195
Query 187 GATGCGGACACAAACACCATGGTAGCTCTTGCCGGCTCTGGTATCGAAGTTATGGTTGCA 246
||||| ||||||||||| |||| |||||| |||||||| || ||||||| ||||| ||
Sbjct 196 GATGCCGACACAAACACGATGGGAGCTCTCGCCGGCTCCGGCGTCGAAGTGATGGTGGCG 255
Query 247 ATCCCTAACGATCAGCTCAAAGCCATGGGAAGTTAT-AACAGAGCTAAAGATTGGGTTCG 305
|||||||| |||| |||| |||||||||||| ||| || ||||||||||||||||| |
Sbjct 256 ATCCCTAATGATCTGCTCCAAGCCATGGGAAACTATCAA-AGAGCTAAAGATTGGGTCCA 314
Query 306 AAGAAACATCACTCG--T----TTCAATGACGATGTTAAAATCAAATATGTCGCCGTTGG 359
||||||| || || | | || ||| ||| ||||| ||||||||||| || || ||
Sbjct 315 AAGAAACGTCTCTAGATTCAACTTTAATAACGGCGTTAAGATCAAATATGTTGCAGTGGG 374
Query 360 AAATGAGCCGTTTTTGACAGCTTATAATGGATCATTCATAAACTTAACTTATCCAGCACT 419
|| |||||||| |||||||| || || ||||||||||||||| ||||||||||||||||
Sbjct 375 GAACGAGCCGTTCTTGACAGCGTACAACGGATCATTCATAAACCTAACTTATCCAGCACT 434
Query 420 CTTCAACATCCAAAAAGCATTAAACGAAGCTGGAGTTGGAGATTTCATCAAAGCCACCGT 479
|||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||
Sbjct 435 CTTCAACATCCAAACCGCTTTAAACGAAGCTGGAGTTGGTGATTTCACCAAAGCCACCGT 494
Query 480 ACCTTTAAACGCTGACGTCTATAATTCTCCGCTGGAAAATCCA-GTTCCTTCTGCCGGAA 538
||||||||||| ||||| || |||||||| | ||| || ||| || || || |||||||
Sbjct 495 TCCTTTAAACGCCGACGTTTACAATTCTCCTCCGGACAA-CCAAGTCCCATCCGCCGGAA 553
Query 539 GTTTCCGT-CAAGACATCTTTG-AAGAGATGAAACTAATAGTCAACTTCTTAGCTCATAA 596
| |||||| | ||||| | | |||| |||| || ||| || |||||| | || || ||
Sbjct 554 GATTCCGTTCC-GACAT-TATCCAAGAAATGACACAAATCGTTAACTTCCTCGCACAGAA 611
Query 597 CAAAGCTCCCTTCACTGTCAACATTTACCCTTTCCTAAGTCTTTACCTTA-GCAGCGA-T 654
||||||||||||||| |||||||||||||||||||| ||||| ||| ||| |||| || |
Sbjct 612 CAAAGCTCCCTTCACCGTCAACATTTACCCTTTCCTCAGTCTCTAC-TTAAGCAGTGACT 670
Query 655 TTCCCTTTTGACTATGCCTTCTTCAATGGCCAAAACACTGTCAGCGATAACGGCGTTATC 714
|||| ||| || || || ||||| | ||||||||||| || | || ||||||||| ||
Sbjct 671 TTCC-TTTCGATTACGCTTTCTTTGACGGCCAAAACACCGTTAATGACAACGGCGTTGTC 729
Query 715 TATACAAATGTTTTCGACGCCAATTTCGATACCCTCTTGGCTTCACTTAAA-GCTTTGGG 773
|| ||||| || |||||||| |||||||| || || || ||||| ||||| || |||
Sbjct 730 TACACAAACGTCTTCGACGCTAATTTCGACACGCTTTTAGCTTCT-TTAAACGCGTTGAA 788
Query 774 TCATGG-AGACATG-ACTGTTATAGTTGGAGAAGTTGGTTGGCCAACGGATGGTGACAAG 831
||| || | ||||| | || || |||||||||||||||||||| |||||||||||||||
Sbjct 789 TCACGGTA-ACATGGAA-GTGATCGTTGGAGAAGTTGGTTGGCCTACGGATGGTGACAAG 846
Query 832 AATGCTAACATCCCAAACGCAGAACGCTTCTACACAGGTTTGCTTCCAAAGCTAGC-AGC 890
|| || ||| | | |||||| ||||| || || | ||||||||||| | | || | |
Sbjct 847 AACGCAAACGTTCAAAACGCGGAACGGTTTTATTCCGGTTTGCTTCCGCGGTTGGCGAAC 906
Query 891 CAACAG-AGGAACACCTATGCGTCCGGGTTACATTGAAGTTTATCTCTTT-GGATTCATC 948
||| | |||||| ||||||||| ||||||||||| |||||||| ||| ||||| |||
Sbjct 907 -AAC-GTAGGAACTCCTATGCGTAAAGGTTACATTGAGGTTTATCT-TTTCGGATTTATC 963
Query 949 GATGAAGATGC-AAA-GAGTATAGCTCCTGGTAACTTT-GAACGTCACTGGGGGATATTC 1005
|||||||||| ||| | || | || || || || ||| |||||||| ||||||||||||
Sbjct 964 GATGAAGATGTGAAAAGCGT-T-GCCCCGGGGAA-TTTCGAACGTCATTGGGGGATATTC 1020
Query 1006 AAATACGATGGCCAACCGAAATTTCCAGCGGATTTGTCAGGAGCA-GGTCAGAAGAAGAT 1064
|||| ||||||||||||||||| || | ||||| || || ||| |||||||| ||| |
Sbjct 1021 AAATTTGATGGCCAACCGAAATTCCCGGTAGATTT-TCGGGGGCAAGGTCAGAAAAAGTT 1079
Query 1065 CTTAACCGGAGCTCAAAATGTTCAGTACTTGC-GAAACCAGTGGTGTATGTTCAACCCTA 1123
|||||||||||||||||| ||||||||||||| ||| ||||||||||||||| || ||||
Sbjct 1080 CTTAACCGGAGCTCAAAACGTTCAGTACTTGCTGAA-CCAGTGGTGTATGTTTAATCCTA 1138
Query 1124 ATGCCCTCACTTTCAGCAACAACACTAACCAGCTCGGGGATAACGTAAACTACGCATGTA 1183
||| || | | || | | || || | || |||||| |||||||||| |||
Sbjct 1139 ATGGCCG---TG---GTAATATGAGTAGCCT--T-GGAGATAACATAAACTACGCGTGTT 1189
Query 1184 C-CTTCTCCGACTGCACAGCTTTGGGCTATGGTTCCTCTTGTGGTAATCTTGATGAGG-T 1241
| | | || ||||| || ||||| || || || ||||||||||| |||||||||| | |
Sbjct 1190 CGCAT-TCGGACTGTACTGCTTTAGGTTACGGATCCTCTTGTGGCAATCTTGATGCGAAT 1248
Query 1242 CGGGAATGCCTCGTATGCATTCAACATGTATTTTCAGGTACAGAATCAA-AAGGCAGAGG 1300
|| || || || || || || || |||||||| || || || ||||| ||| | |||
Sbjct 1249 -GGAAACGCATCTTACGCGTTTAATATGTATTTCCAAGTGCAAAATCAGGAAG-CTCAGG 1306
Query 1301 CTTGTGACTTTGA-GGGCCTTGCAATTATCACTAC-CAGGAATATTTCTCGAGAACAGTG 1358
| || || ||||| |||| |||||| || ||||| || |||||||||| || ||| ||
Sbjct 1307 CGTGCGATTTTGAAGGGC-TTGCAACGATTACTACTCAA-AATATTTCTCAAGGACAATG 1364
Query 1359 TAATTTTCCTATTCAAATCGGAGATCCA 1386
|||||| || ||||| || ||||| |||
Sbjct 1365 TAATTTCCCGATTCAGATTGGAGAGCCA 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5