BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18250.1
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488698 jgi|Araly1|488698|fgenesh2_kg.6__1832__AT5G18250.1 745 0.0
Ahg477663 jgi|Araly1|477663|fgenesh2_kg.3__364__AT3G04040.1 401 3e-111
> Ahg488698 jgi|Araly1|488698|fgenesh2_kg.6__1832__AT5G18250.1
Length=514
Score = 745 bits (403), Expect = 0.0
Identities = 465/494 (94%), Gaps = 7/494 (1%)
Strand=Plus/Plus
Query 89 AAAGAAAATGACGGATTCTGGGCATGATATTGAAATCAGATGCCATCACTGCGCAGGCCC 148
|||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 25 AAAGTAAATGACGGATTCTGAGCATGATATCGATATCAGATGCCATCACTGCGCAGGCCC 84
Query 149 TCTTACCAGAAATTTGGAAACCAGTAAATGGACTGTTGATCCGTTCATCAGGGATAGCTT 208
|||||| | |||| |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 85 TCTTACGAAAAATCTGGAAACCAGTAAATGGACTGTGGCTCCGTTCATCAGGGATAGCTT 144
Query 209 TTCTATGATTGGATCAGCTGTTGGAGGTACTGCAAGTGCATTCATTGGATTTAACCATGC 268
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 145 CTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAGTGCATTCATTGGATTTAACCATGC 204
Query 269 AATGCCAATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTACATTTTCTTGTTGGGGC 328
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 AATGCCTATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTACATTTTCTTGTTGGGGC 264
Query 329 ACCACCTGTTATAGTTCTTTCATCAGCATGTGCTGGACTAGCAGGTGGCACTGTACCGGC 388
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 265 ACCGCCTGTTATAGTTCTTTCATCAGCCTGTGCTGGACTAGCAGGTGGCACTGTACCGGC 324
Query 389 ACTGGCACAGCTCGCTTCATCTTCATACCGAGCTGCAGTCCATTCGTCTCAGCCACCACA 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ACTGGCACAGCTCGCTTCATCTTCATACCGAGCTGCAGTCCATTCGTCTCAGCCACCACA 384
Query 449 AGCACAAAAGGATAACAAAATGCAGAAGTCTACGACTTCTCCTTTGTAAACGACACACAC 508
|||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||
Sbjct 385 AGCACAAAAGGATAACAAAATGCAAAAGTCTACAACTTCTCCTCTGTAAAT--CACACA- 441
Query 509 AGCACAGCTCTCTCT-TTT-GTTCTTATTTA-TTTCTCTTCATTTTGTATGTCAAATCTT 565
|||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||
Sbjct 442 -GCACAGCTCTCTCTCTTTTGTTCTTATTTTCTTTCTCTCCATTTTGTATGTCAAATCTT 500
Query 566 TTCTTTGAAAGAGA 579
||||||| |||||
Sbjct 501 CTCTTTGAGAGAGA 514
> Ahg477663 jgi|Araly1|477663|fgenesh2_kg.3__364__AT3G04040.1
Length=658
Score = 401 bits (217), Expect = 3e-111
Identities = 346/408 (85%), Gaps = 9/408 (2%)
Strand=Plus/Plus
Query 95 AATGACGGATTC-TGGGCATGATATTGAAATC-AGATGCCATCACTGCGCAGGCCCTCTT 152
|||| ||||||| | || | || || | ||| |||||||||||||||||||||||||||
Sbjct 31 AATGGCGGATTCAT-GGAAGGAGATCG-GATCTAGATGCCATCACTGCGCAGGCCCTCTT 88
Query 153 ACCAGAAATTTGGAAACCAGTAAATGGACTGTTGATCCGTTCATCAGGGATAGCTTTTCT 212
|| | |||| ||||||||| |||||||||| | ||||||||||||||||||||| |||
Sbjct 89 ACGAAAAATCTGGAAACCAACGAATGGACTGTGGCTCCGTTCATCAGGGATAGCTTCTCT 148
Query 213 ATGATTGGATCAGCTGTTGGAGGTACTGCAAGTGCATTCATTGGATTTAACCATGCAATG 272
||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||
Sbjct 149 ATGATTGGATCAGCTGTAGGTGGTACTGCAAGTGCTTTCATTGGATTTAACCATGTAATG 208
Query 273 CCAATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTACATTTTCTTGTTGGGGCACCA 332
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct 209 CCGATTGTACGCAAGTGGATAAAAGGACCCATGTGGTTGCATTTTCTTGTTGGTGCTCCA 268
Query 333 CCTGTTATAGTTCTTTCATCAGCATGTGCTGGACTAGCAGGTGGCACTGTACCGGCACTG 392
||||| |||||| |||||||||| ||||||||||| ||||||||| |||||||||| ||
Sbjct 269 CCTGTGATAGTTGTTTCATCAGCCTGTGCTGGACTTGCAGGTGGCGCTGTACCGGCTTTG 328
Query 393 GCACAGCTCGCTTCATCTTCATACCGA-GCTGCAGTCCATTCGTCTCAGCCACCACAAGC 451
|||||||| || || || || || | | || || || ||||| ||||||||||| ||||
Sbjct 329 GCACAGCTTGCATCGTCGTCTTATC-ATGCGGCTGTACATTCATCTCAGCCACCGCAAGG 387
Query 452 ACAAAAGGATAACAAAATGCAGAAGTC-T--ACGACTTCTCCTTTGTA 496
||| || | |||||| |||| || || | || | |||||||| |||
Sbjct 388 GCAAGAGAAGAACAAATTGCACAAATCCTCTACCATTTCTCCTTCGTA 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24246175212
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5