BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18260.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941349 jgi|Araly1|941349|scaffold_601893.1 1524 0.0
> Ahg941349 jgi|Araly1|941349|scaffold_601893.1
Length=1394
Score = 1524 bits (825), Expect = 0.0
Identities = 1082/1201 (90%), Gaps = 37/1201 (3%)
Strand=Plus/Plus
Query 227 ATTGTTTGGCCTTGAAGGCGGTGAGGATAAACCAGAGCTCAAAACGGGTGCACTCTGTTG 286
||| ||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 225 ATT-TTTGGCCTTCAAGGCGTTGAGAACAAACCAGAGCTCAAAACGGGTGCACTCTGTTG 283
Query 287 TATTGTGGCCTCAAGGCCACTGGTTACAACAAAATCT-TCACCCCACAGCGGAAGGGATA 345
||| ||||||||||||||||||||||||||||||| | ||| | ||||| ||||||||
Sbjct 284 TATCGTGGCCTCAAGGCCACTGGTTACAACAAAAT-TGTCAGTACGCAGCGCAAGGGATA 342
Query 346 TTCCTCAATCAAGTCAAGCTGAAGCCTTGCAATGGCGGACAAATTTCAGCTTCTCACCTG 405
||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |
Sbjct 343 TTCCTCAATCAAGTCAAGCCGATGCCTTGCAATGGCGGACGAATTTCAGCTTCTCA-C-- 399
Query 406 CTGCTGGCTATACTAGAGATGGTTTGGAACAGGATATGAGTGATGAGAGTCCCGCTTTTG 465
||||||| ||||| |||||||| |||||||| || ||| | |||||||||||||||||||
Sbjct 400 CTGCTGGATATACAAGAGATGGCTTGGAACAAGAAATGGGCGATGAGAGTCCCGCTTTTG 459
Query 466 CATTGC-ACTCGGGCAGCAGTAGACAAAGAAAAAGTTTGGAATTCAGATTTCAGCAGTCG 524
|||| | |||| |||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 460 CATT-CTACTCTAGCAGCAGTAGACAAAGAAAAAGTTTGGAATTCAGGTTTCAGGAATCG 518
Query 525 CCAAGATGGGCTCCATACTCATCTGCTTCTGATGGGAACGAACAGAAAACCTCC-TTGGT 583
|||||||||||| || ||||||||||||||| |||||| ||||||||||| ||| || |
Sbjct 519 CCAAGATGGGCTTCAAACTCATCTGCTTCTGGTGGGAATGAACAGAAAACGTCCATT-G- 576
Query 584 TAATAATAGTCTAACAAGACCAAATAGCTCAAATCCTCAATGCTTAAACGAGGAGAACGG 643
| | |||||||| ||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 577 T--TGATAGTCTACCAAGACCAACTAACTCAAATCCTCAATGCATAAACGAGGAGAACGG 634
Query 644 TTTTGATAGAGACAGTACCGCCATCTCAACGAGTTTCAGATCGTTGCTGTCTCTTTCAGA 703
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 635 TTTTGATAGAGACAGTACAGCCATCTCAACGAGTTTGAGATCTTTGCTGTCTCTTTCAGA 694
Query 704 GTCATCTGTCCCATGGGAGACTCCGACCAACAATCAGTCTTCCAGCCTTACTCACTGCTC 763
|||||||| ||||||||||||| | | | || ||||||||||||||||||||||| ||
Sbjct 695 GTCATCTGCCCCATGGGAGACT-C--CTAGTAAGCAGTCTTCCAGCCTTACTCACTGTTC 751
Query 764 TTACCCTCGAGTCTTCTGCAACCCGGTTTCAGTTTGTGAGAATCCTGAACCTGATCATAC 823
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 752 TTACCCTCGAGTCTTCTGCAACCCGGTTTCAGTTTGTGAGAATCCTGAACCCGATCATAC 811
Query 824 GCAAGAAGACTCGTCCACAAATCCTGGTTCCAGTATCATGATGTCCACAAGAAACCACCA 883
|||||||| |||||||||||||||| ||||||| |||| | ||||||||||||||||||
Sbjct 812 ACAAGAAGATTCGTCCACAAATCCTGATTCCAGTTTCATAACGTCCACAAGAAACCACCA 871
Query 884 AGGCTCACCAGTAGAGGAAGAAGTATCACCAAACTCGAGCAGCAATGACATGTTGCTAGA 943
|| | | | || | ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 872 AG--T-A---G-AG-G-AAGAAGTATCACCAAACTCGAACAGCAATGACATGCTGCTAGA 922
Query 944 TGTTGAAAGATCCAATGACACAGAAGTCGCAAACCCGAGATCTGAACAAGGTTCAATGAC 1003
||||||||| ||||||| |||||||||| |||||||||| |||||| ||||||||||||
Sbjct 923 TGTTGAAAGGCCCAATGATACAGAAGTCGAAAACCCGAGAACTGAACCAGGTTCAATGAC 982
Query 1004 ACATCAAAGATGCGGGATTTGCAAGAAGCTTTTATCTCAGAAATCTCCATGGAGCTCATA 1063
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 ACATCAGAGATGCGGGATTTGCAAGAAGCTTTTATCTCAGAAATCTCCATGGAGCTCATA 1042
Query 1064 CAAGATATTGAGATCCAGAGACATGCCAGCCACTGGTGTTTTCCCCTGCCATCACGTCTA 1123
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1043 CAAGATAATGAGATCAAGAGACATGCCAGCCGCTGGTGTTTTCCCCTGCCATCACGTCTA 1102
Query 1124 CCATGTTGAGTGTTTAGACAAAGCAACCCCAACAGCTCAAACCAGAGACCCGTCTTGTCC 1183
||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||
Sbjct 1103 CCATGTTGAGTGTTTAGACAAAGTGACGCCAACAGCTGAAACCCGAGACCCGTCTTGTCC 1162
Query 1184 TGTTTGCTCAAACACCATTGGAGTAATGGAACAGCCACTGATAGCACCTGAAACATTGCA 1243
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 1163 TGTTTGCTCAAACACCATTGGAGCAATGGAGCAGACACTGATAGCACCTGAAACATTGCA 1222
Query 1244 AATGGCTCTAAGATCTCTCAGAAGAAGCCGCACAGCTCTAGAATTAGAGACAGTAAG-AG 1302
|||||||||||||||||||||||||||||||||| || | || ||||||| |||||| |
Sbjct 1223 AATGGCTCTAAGATCTCTCAGAAGAAGCCGCACAACTTTGGAGTTAGAGAGAGTAAGTA- 1281
Query 1303 TCCCTTCCAATGACAATCAAAGAAGACACAATACCAGAAGAAGCCATAAATGGGACAAAC 1362
|||||| |||| |||||||||||||||||| |||| ||| |||||||| ||||
Sbjct 1282 TCCCTTGCAATAACAATCAAAGAAGACACA------GAAG---CCAGAAATGGGAAAAAC 1332
Query 1363 TCAGCTGCTGTTTGAATATAAGCTTCTCATCTTCTTCCTAGAAATCCAACATGACCCGAT 1422
|| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1333 TCGGCTGCTGTTTGAATATAAGCTTCTCATCTTCTTCCTAGAA-TCCAACATTACCCGAT 1391
Query 1423 T 1423
|
Sbjct 1392 T 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5