BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18270.1 Length=1525 Score E Sequences producing significant alignments: (Bits) Value Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462 1648 0.0 Ahg917064 jgi|Araly1|917064|Al_scaffold_0008_1815 207 1e-52 > Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462 Length=1005 Score = 1648 bits (892), Expect = 0.0 Identities = 970/1008 (96%), Gaps = 3/1008 (0%) Strand=Plus/Plus Query 196 ATGGCGGTTGTGGTTGAAGAAGGTGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGAT 255 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGGTTGTGGTCGAAGAAGGCGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGAT 60 Query 256 TTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATGTTACCTTAAG 315 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 61 TTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATATTACCTTAAG 120 Query 316 GAGAAGGTTTTAAACAGCCGATTCACGGCTGTGGCCATGGGAGAAGCTGATCTCAACAAG 375 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GAGAAGGTTTTAAACAGCCGATTCACGGCGGTGGCCATGGGAGAAGCTGATCTCAACAAG 180 Query 376 TGTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTTC 435 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 TGTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTTTACTTCTTC 240 Query 436 TGTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAGGA 495 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| Sbjct 241 TGTCAAAGGGACAGGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACAGAGTCCGGA 300 Query 496 TACTGGAAAGCCACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGG 555 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TATTGGAAAGCGACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGG 360 Query 556 ATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGG 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGG 420 Query 616 GTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTCCCAAAATCTGCA 675 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 421 GTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATCACAATCTCCCCAAATCTGCA 480 Query 676 AGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACCACAACCCAA 735 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 481 AGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACTACAACCCAA 540 Query 736 CCAATGACGAGAATACCCGTTGAAGATTTCACAAGGATGGATTCTCTAGAGAACATTGAT 795 ||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| Sbjct 541 CCATTGACGAGAATACCCATTGAAGATCTCACGAGGATGGATTCTCTAGAGAACATTGAT 600 Query 796 CATCTCCTAGACTTCTCATCTCTTCCTCCTCTCATAGACCCGAGTTTCATGAGTCAAACC 855 |||||||||||||| |||||||||||||| |||||||| || ||||||||| |||||||| Sbjct 601 CATCTCCTAGACTTTTCATCTCTTCCTCCCCTCATAGATCCAAGTTTCATGGGTCAAACC 660 Query 856 GAACAACCAAACTTCAAACCCATCAACCCTCCAACTTACGATATCTCATCACCAATCCAA 915 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 661 GAACAACCAAACTTCAAACCCATCAACCCTCCGACTTACAATATCTCATCACCAATCCAA 720 Query 916 CCCCATCATTTCAATTCTTACCAATCAATCTTTAACCACCAGGTTTTTGGTTCTGCTTCG 975 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 721 CCCCATCATTTCAATACTTACCAATCAATCTTTAACCACCAGGGTTTTGGTTCTGCTTCG 780 Query 976 GGCTCTACGTACAACAACAACAACGAGATGATCAAGATGGAGCAATCACTTGTTAGTGTA 1035 || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 781 GGTTCTACATACAACAACAAC---GAGATGATCAAGATGGAGCAATCACTTGTTAGTGTA 837 Query 1036 TCTCAAGAAACATGCCTAAGCTCAGATGTGAACGCGAACATGACTACAACCACGGAGGTA 1095 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 838 TCTCAAGAAACATGCCTAAGCTCAGATGTTAACGCGAACACGACTACAACCACGGAGGTA 897 Query 1096 TCTTCGGGTCCTGTAATGAAACAAGAAATGGGGATGATGGGAATGGTGAATGGTAGCAAG 1155 || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 898 TCCTCGGGTCCGGTAATGAAACAAGAGATGGGGATGATGGGAATGGTGAATGGTAGCAAG 957 Query 1156 TCGTATGAAGATCTATGTGACTTGAGGGGGGACTTGTGGGACTTCTAA 1203 ||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 958 TCGTATGAAGATCTATGTGACTTGAGGGGGGTCTTATGGGACTTCTAA 1005 > Ahg917064 jgi|Araly1|917064|Al_scaffold_0008_1815 Length=1110 Score = 207 bits (112), Expect = 1e-52 Identities = 357/472 (76%), Gaps = 30/472 (6%) Strand=Plus/Plus Query 259 CCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACAT-GTTACCTTAAGGA 317 ||||| ||||||||||||||||| || ||||||||| |||| || | ||||| | Sbjct 52 CCACCGGGTTTCAGGTTTCATCCTACGGACGAAGAGCTCATCAC-TCATTACC-TCCTCC 109 Query 318 G-AAGGTTTTAAACAGCCGATTCAC-GGCTGTGGCCATGGGAGAAGCTGATCTCAACAAG 375 | ||||| | || | | ||| | || || ||||| | ||| | ||||||||||||| Sbjct 110 GCAAGGTCCTCGACGGTTGCTTCTCAAGCCGT-GCCATCGCAGAGGTTGATCTCAACAAG 168 Query 376 TGTGAGCCTTGG-GATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTT 434 |||||||||||| | || || ||| || |||||||| |||||||| | |||||||| Sbjct 169 TGTGAGCCTTGGCAACTT-CCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTT 227 Query 435 CT-GTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAG 493 | | | | ||| |||| ||||| || ||| |||| || ||| | || || ||| | | Sbjct 228 -TAGCCTCCGTGACCGGAAATATCCAACGGGGCTGAGAACAAACAGAGCAACTGAGGCTG 286 Query 494 GATACTGGAAAGCCACCGGGAAGGATAAG-GAGATCTTCAAAG-GCAAAG-GTTGT---C 547 | ||||||||||| ||||| || || || |||||||| || | ||| |||| | Sbjct 287 GTTACTGGAAAGCTACCGGAAAAGA-CAGAGAGATCTT--TAGTTCCAAGACTTGTGCAC 343 Query 548 TCGTTGGGATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGA 607 | |||||||||||||| || ||||| ||||| | |||||||||||| ||||| || |||| Sbjct 344 TTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCTAAAGGAGAGAAGA 403 Query 608 CTAATTGGGTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTC--C- 664 ||||||||| |||||||||||||||||||||||||||| | | | |||| || || | Sbjct 404 GTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAAT-T-C-TCTTACCATTTCATCT 460 Query 665 CAA-AATCTGCAAGGGACGAATGGGTCG-TGTGTAGGGTTTTTCACAAGAAC 714 ||| || || ||||| | |||||||| | | | ||||||||| || || ||| Sbjct 461 CAAGAAGCTCCAAGG-ATGAATGGGT-GATCTCTAGGGTTTTCCAGAA-AAC 509 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57097277255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5