BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18270.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462 1648 0.0
Ahg917064 jgi|Araly1|917064|Al_scaffold_0008_1815 207 1e-52
> Ahg326242 jgi|Araly1|326242|fgenesh1_pm.C_scaffold_6001462
Length=1005
Score = 1648 bits (892), Expect = 0.0
Identities = 970/1008 (96%), Gaps = 3/1008 (0%)
Strand=Plus/Plus
Query 196 ATGGCGGTTGTGGTTGAAGAAGGTGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGAT 255
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGTTGTGGTCGAAGAAGGCGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGAT 60
Query 256 TTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATGTTACCTTAAG 315
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATATTACCTTAAG 120
Query 316 GAGAAGGTTTTAAACAGCCGATTCACGGCTGTGGCCATGGGAGAAGCTGATCTCAACAAG 375
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GAGAAGGTTTTAAACAGCCGATTCACGGCGGTGGCCATGGGAGAAGCTGATCTCAACAAG 180
Query 376 TGTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTTC 435
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTTTACTTCTTC 240
Query 436 TGTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAGGA 495
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 241 TGTCAAAGGGACAGGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACAGAGTCCGGA 300
Query 496 TACTGGAAAGCCACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGG 555
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATTGGAAAGCGACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGG 360
Query 556 ATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGG 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGG 420
Query 616 GTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTCCCAAAATCTGCA 675
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 421 GTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATCACAATCTCCCCAAATCTGCA 480
Query 676 AGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACCACAACCCAA 735
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 AGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACTACAACCCAA 540
Query 736 CCAATGACGAGAATACCCGTTGAAGATTTCACAAGGATGGATTCTCTAGAGAACATTGAT 795
||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 541 CCATTGACGAGAATACCCATTGAAGATCTCACGAGGATGGATTCTCTAGAGAACATTGAT 600
Query 796 CATCTCCTAGACTTCTCATCTCTTCCTCCTCTCATAGACCCGAGTTTCATGAGTCAAACC 855
|||||||||||||| |||||||||||||| |||||||| || ||||||||| ||||||||
Sbjct 601 CATCTCCTAGACTTTTCATCTCTTCCTCCCCTCATAGATCCAAGTTTCATGGGTCAAACC 660
Query 856 GAACAACCAAACTTCAAACCCATCAACCCTCCAACTTACGATATCTCATCACCAATCCAA 915
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 661 GAACAACCAAACTTCAAACCCATCAACCCTCCGACTTACAATATCTCATCACCAATCCAA 720
Query 916 CCCCATCATTTCAATTCTTACCAATCAATCTTTAACCACCAGGTTTTTGGTTCTGCTTCG 975
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 CCCCATCATTTCAATACTTACCAATCAATCTTTAACCACCAGGGTTTTGGTTCTGCTTCG 780
Query 976 GGCTCTACGTACAACAACAACAACGAGATGATCAAGATGGAGCAATCACTTGTTAGTGTA 1035
|| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GGTTCTACATACAACAACAAC---GAGATGATCAAGATGGAGCAATCACTTGTTAGTGTA 837
Query 1036 TCTCAAGAAACATGCCTAAGCTCAGATGTGAACGCGAACATGACTACAACCACGGAGGTA 1095
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 838 TCTCAAGAAACATGCCTAAGCTCAGATGTTAACGCGAACACGACTACAACCACGGAGGTA 897
Query 1096 TCTTCGGGTCCTGTAATGAAACAAGAAATGGGGATGATGGGAATGGTGAATGGTAGCAAG 1155
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 TCCTCGGGTCCGGTAATGAAACAAGAGATGGGGATGATGGGAATGGTGAATGGTAGCAAG 957
Query 1156 TCGTATGAAGATCTATGTGACTTGAGGGGGGACTTGTGGGACTTCTAA 1203
||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 958 TCGTATGAAGATCTATGTGACTTGAGGGGGGTCTTATGGGACTTCTAA 1005
> Ahg917064 jgi|Araly1|917064|Al_scaffold_0008_1815
Length=1110
Score = 207 bits (112), Expect = 1e-52
Identities = 357/472 (76%), Gaps = 30/472 (6%)
Strand=Plus/Plus
Query 259 CCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACAT-GTTACCTTAAGGA 317
||||| ||||||||||||||||| || ||||||||| |||| || | ||||| |
Sbjct 52 CCACCGGGTTTCAGGTTTCATCCTACGGACGAAGAGCTCATCAC-TCATTACC-TCCTCC 109
Query 318 G-AAGGTTTTAAACAGCCGATTCAC-GGCTGTGGCCATGGGAGAAGCTGATCTCAACAAG 375
| ||||| | || | | ||| | || || ||||| | ||| | |||||||||||||
Sbjct 110 GCAAGGTCCTCGACGGTTGCTTCTCAAGCCGT-GCCATCGCAGAGGTTGATCTCAACAAG 168
Query 376 TGTGAGCCTTGG-GATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTT 434
|||||||||||| | || || ||| || |||||||| |||||||| | ||||||||
Sbjct 169 TGTGAGCCTTGGCAACTT-CCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTT 227
Query 435 CT-GTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAG 493
| | | | ||| |||| ||||| || ||| |||| || ||| | || || ||| | |
Sbjct 228 -TAGCCTCCGTGACCGGAAATATCCAACGGGGCTGAGAACAAACAGAGCAACTGAGGCTG 286
Query 494 GATACTGGAAAGCCACCGGGAAGGATAAG-GAGATCTTCAAAG-GCAAAG-GTTGT---C 547
| ||||||||||| ||||| || || || |||||||| || | ||| |||| |
Sbjct 287 GTTACTGGAAAGCTACCGGAAAAGA-CAGAGAGATCTT--TAGTTCCAAGACTTGTGCAC 343
Query 548 TCGTTGGGATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGA 607
| |||||||||||||| || ||||| ||||| | |||||||||||| ||||| || ||||
Sbjct 344 TTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCTAAAGGAGAGAAGA 403
Query 608 CTAATTGGGTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTC--C- 664
||||||||| |||||||||||||||||||||||||||| | | | |||| || || |
Sbjct 404 GTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAAT-T-C-TCTTACCATTTCATCT 460
Query 665 CAA-AATCTGCAAGGGACGAATGGGTCG-TGTGTAGGGTTTTTCACAAGAAC 714
||| || || ||||| | |||||||| | | | ||||||||| || || |||
Sbjct 461 CAAGAAGCTCCAAGG-ATGAATGGGT-GATCTCTAGGGTTTTCCAGAA-AAC 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5