BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18280.2
Length=2178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941351 jgi|Araly1|941351|scaffold_601895.1 1888 0.0
Ahg477668 jgi|Araly1|477668|fgenesh2_kg.3__369__AT3G04080.1 1134 0.0
Ahg356408 jgi|Araly1|356408|fgenesh1_pg.C_scaffold_8000195 320 3e-86
> Ahg941351 jgi|Araly1|941351|scaffold_601895.1
Length=1461
Score = 1888 bits (1022), Expect = 0.0
Identities = 1090/1122 (97%), Gaps = 7/1122 (1%)
Strand=Plus/Plus
Query 796 CTAAAACCAGGGTTGAGCGCATATCCTACTGATCCCCGACAAGCAGCAAACTCTTTGGTG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTAAAACCAGGGTTGAGCGCATATCCTACTGATCCCCGACAAGCAGCAAACTCTTTGGTG 402
Query 856 TCTCTTCTTGACAAAGCAGAAGCTTCTGTTCCCCGTGAGCTGCGTCCAAAGACACATGTC 915
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 403 TCTCTTCTTGACAAAGCAGAAGCTTCTGTTCCCCGCGAGCTGCGTCCAAAGACACCTGTC 462
Query 916 AGAGTTGGGGCTACTGCAGGTTTGAGGACGCTGGGTCATGATGCATCTGAGAACATTTTG 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AGAGTTGGGGCTACTGCAGGTTTGAGGACGCTGGGTCATGATGCATCTGAGAACATTTTG 522
Query 976 CAAGCGGTTAGGGAACTCCTGAGAGATAGAAGCATGCTGAAAACTGAGGCAAATGCTGTT 1035
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 523 CAAGCGGTTAGGGAACTCTTGAGAGATAGAAGCATGCTTAAGACTGAGGCAAATGCTGTT 582
Query 1036 ACTGTACTGGATGGTACCCAGGAAGGTTCTTATCAGTGGGTAACAATTAACTACTTGCTA 1095
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 583 ACTGTACTGGATGGTACCCAAGAAGGTTCTTATCAGTGGGTAACAATTAACTACTTGCTA 642
Query 1096 AGGAACTTGGGAAAACCATACTCAGATACGGTAGGAGTGGTTGATCTTGGAGGGGGGTCT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 AGGAACTTGGGAAAACCATACTCAGATACGGTAGGAGTGGTTGATCTTGGAGGGGGGTCT 702
Query 1156 GTTCAAATGGCATATGCTATATCTGAGGAAGATGCTGCAAGTGCACCAAAACCATTAGAA 1215
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 703 GTTCAAATGGCATATGCTATATCCGAGGAAGATGCTGCAAGTGCACCAAAACCATTAGAA 762
Query 1216 GGAGAGGATTCATATGTCAGAGAGATGTATCTGAAGGGACGGAAGTATTTCCTCTATGTT 1275
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 763 GGAGAGGATTCATATGTCAGAGAAATGTATCTGAAGGGACGGAAGTATTTCCTCTACGTT 822
Query 1276 CACAGTTACCTACATTACGGATTACTGGCCGCTCGAGCAGAGATTTTGAAAGTTTCTGAA 1335
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 823 CACAGTTACCTACATTACGGATTACTGGCAGCCCGAGCAGAGATTTTGAAAGTTTCTGAA 882
Query 1336 GATTCAGAGAACCCCTGCATCGTGGCAGGCTATGATGGTATGTACAAGTATGGAGGAAAA 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 883 GATTCAGAGAACCCCTGCATCGTGGCAGGCTATGATGGTATGTACAAGTATGG-GGAAAA 941
Query 1396 G-AATTTAAAGCCCCTGCTTCACAATCGGGTGCGAGTCTTGACGAGTGCCGAAG-GATAA 1453
| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||
Sbjct 942 GGAATTTAAAGCCCCTGCTTCACCATCTGGTGCGAGTCTTGACGAGTGCCGAAGAG-TAA 1000
Query 1454 CCATCAACGCACTAAAAGTGAATGATACACTGTGTACACACATGAAATGCACATTCGGAG 1513
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1001 CCATCAACGCACTAAAAGTGAATAATACACTGTGTACACACATGAAATGCACATTCGGTG 1060
Query 1514 GAGTCTGGAATGGTGGTCGAGGTGGTGGTCAAAAGAATATGTTTGTTGCTTCTTTTTTCT 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GAGTCTGGAATGGTGGTCGAGGTGGTGGTCAAAAGAATATGTTTGTTGCTTCTTTTTTCT 1120
Query 1574 TCGATCGTGCTGCTGAGGCTGGATTCGTTGACCCGAAGCAACCTGTTGCTACAGTTCGTC 1633
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1121 TCGATCGTGCTGCTGAGGCTGGATTTGTTGACCCGAAGCAACCTGTTGCTACAGTTCGTC 1180
Query 1634 CCATGGACTTTGAGAAAGCAGCAAAGAAAGCTTGTAGTATGAAGCTGGAAGAGGGAAAAT 1693
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1181 CTATGGACTTTGAGAAAGCAGCAAAGAAAGCTTGTAGTATGAAGCTGGAAGAGGGGAAAG 1240
Query 1694 C-AACGTTCCCACTTGTGGAGGAAGAGAATTTGCCTTACTTGTGCATGGATCTCGTTTAC 1752
| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1241 CGAAA-TTCCCACTTGTGGAGGAAGAGAATTTGCCTTACTTGTGCATGGATCTCATTTAC 1299
Query 1753 CAATATACTCTGCTCATTGATGGATTCGGATTGGAGCCATCACAGACAATAACGTTAGTG 1812
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1300 CAATATACTCTGCTCATTGATGGATTCGGCTTGGAGCCATCACAGACAATAACGTTAGTG 1359
Query 1813 AAGAAGGTCAAATACGGAGACCAAGCCGTGGAAGCTGCGTGGCCATTGGGTAGCGCCATC 1872
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1360 AAGAAGGTCAAATACGGAGACCAGGCCGTGGAAGCTGCGTGGCCATTGGGTAGCGCCATC 1419
Query 1873 GAGGCCGTATCCTCACCGTGAGGGGGCATTTTGGGAATTACA 1914
||||||||||||||||||||||||| |||| || ||||||||
Sbjct 1420 GAGGCCGTATCCTCACCGTGAGGGG-CATTCTGAGAATTACA 1460
Score = 571 bits (309), Expect = 6e-162
Identities = 331/342 (97%), Gaps = 0/342 (0%)
Strand=Plus/Plus
Query 298 GACTCTGTTGACGGAGGTAAGATGACGGCGAAGCGTGGGATTGGACGGCACGAATCTCTT 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GACTCTGTTGACGGAGGTAAGATGACGGCGAAGCGTGGGATTGGACGGCATGAATCTCTT 60
Query 358 GCTGACAAGATCCAACGCCATCGTGGGATTATACTTGTGATTTCGGTTCCCATTGTGTTG 417
|||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 61 GCTGACAAGATCCAACGCCATCGTGGTCTAATTCTTGTGATTTCGGTTCCCATTGTGTTG 120
Query 418 ATCGGTCTCGTTCTTCTGCTAATGCCTGGGAGATCGATTTCTGATTCCGTCGTTGAAGAG 477
||||| || |||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATCGGGCTTGTTCTTCTGCTATTGCCTGGGAGATCGACTTCTGATTCCGTCGTTGAAGAG 180
Query 478 TATTCTGTGCATAATCGCAAAGGAGGTCCTAATTCGAGAGGTCCGAAGAATTACGCTGTG 537
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATACTGTGCATAATCGCAAAGGAGGTCCTAATTCGAGAGGTCCGAAGAATTACGCTGTG 240
Query 538 ATTTTTGATGCTGGAAGTTCTGGTAGCCGTGTACATGTTTACTGTTTTGATCAGAATTTG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTTTTGATGCTGGAAGTTCTGGTAGCCGTGTACATGTTTACTGTTTTGATCAGAATTTG 300
Query 598 GATCTTATTCCTCTTGGGAATGAACTTGAGCTCTTCTTACAG 639
|||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GATCTTATTCCTCTCGGGAATGAACTTGAGCTCTTCTTACAG 342
> Ahg477668 jgi|Araly1|477668|fgenesh2_kg.3__369__AT3G04080.1
Length=1786
Score = 1134 bits (614), Expect = 0.0
Identities = 950/1112 (85%), Gaps = 24/1112 (2%)
Strand=Plus/Plus
Query 796 CTAAAACCAGGG-TTGAGCGCATATCCTACTGATCCCCGACAAG-CAGCAAACTCTTTGG 853
|||||||| ||| || || |||||||||| |||||| || | || |||||||||||||||
Sbjct 686 CTAAAACC-GGGTTTAAGTGCATATCCTAATGATCCTCGGC-AGTCAGCAAACTCTTTGG 743
Query 854 TGTCTCTTCTTGACAAAGCAGAAGCTTCTGTTCCCCGTGAGC-TGCGTCCAAAGACACAT 912
| |||||||| ||||||||||||||||| ||||||||||| | ||||||||||||| | |
Sbjct 744 TATCTCTTCTGGACAAAGCAGAAGCTTCGGTTCCCCGTGA-CTTGCGTCCAAAGACTCCT 802
Query 913 GTCAGAGTTGGGGCTACTGCAGGTTTGAGGACGCTGGGTCATGATGCATCTGAGAACATT 972
|||||||||||||| || |||||||||||| | ||||||| | || ||||| ||||||
Sbjct 803 GTCAGAGTTGGGGCAACCGCAGGTTTGAGGGCTTTGGGTCACCAAGCCTCTGAAAACATT 862
Query 973 TTGCAAGCGGTTAGGGAACTCCTGAGAGATAGAAGCATGCTGAAAACTGAGGCAAATGCT 1032
|||||||||||||||| ||||||| ||||||||| | |||||| ||||||||||||||
Sbjct 863 TTGCAAGCGGTTAGGGTGCTCCTGAAAGATAGAAGTAGGCTGAAGACTGAGGCAAATGCA 922
Query 1033 GTTACTGTACTGGATGGTACCCAGGAAGGTTCTTATCAGTGGGTAACAATTAACTACTTG 1092
|| ||||| ||||||||| | |||||||| |||||||||||||| |||||||||||||||
Sbjct 923 GTGACTGTTCTGGATGGTGCTCAGGAAGGATCTTATCAGTGGGTGACAATTAACTACTTG 982
Query 1093 CTAAGGAAC-TTGGGAAAACCATACTCAGATACGGTAGGAGTGGTTGATCTTGGAGGGGG 1151
|||||| || |||||||| || ||||| || || || |||||||||||||||||||||||
Sbjct 983 CTAAGG-ACTTTGGGAAAGCCGTACTCGGACACAGTTGGAGTGGTTGATCTTGGAGGGGG 1041
Query 1152 GTCTGTTCAAATGGCATATGCTATATCTGAGGAAGATGCTGCAAGTGCACCAAAACCATT 1211
||| ||||| ||||| ||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1042 GTCGGTTCAGATGGCGTATGCTATACCAGAGGAAGATGCTGCAACTGCACCAAAACCATT 1101
Query 1212 AGAAGGAGAGGATTCATATGTCAGAGAGATGTATCTGAAGGGACGGAAGTATTTCCTCTA 1271
|||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1102 AGAAGGCGAGGATTCTTATGTCAGAGAAATGTATCTGAAGGGACGAAAGTATTTCCTCTA 1161
Query 1272 TGTTCACAGTTACCTACATTACGGATTACTGGCCGCTCGAGCAGAGATTTTGAAAGTTTC 1331
|||||| || |||||||||||||| |||||||| ||||| || |||||||||||||| ||
Sbjct 1162 TGTTCATAGCTACCTACATTACGGGTTACTGGCTGCTCGGGCTGAGATTTTGAAAGTCTC 1221
Query 1332 TGAAGATTC-AGAGAACCCCTGCATCGTGGCAGGCTATGATGGTATGTACAAGTATGGAG 1390
||| || || | | |||||||| |||||| | |||| || ||||| ||||| |||||||
Sbjct 1222 TGAGGACTCTA-ACAACCCCTGTATCGTGACTGGCTTTGCTGGTACATACAAATATGGAG 1280
Query 1391 GAAAAGAATTTAAAGCCCCTGCTTCACAATCGGGTGCGAGTCTTGACGAGTGCCGAAG-G 1449
|||| | |||||||| | ||| | | ||| ||||| ||||| || || ||||| | |
Sbjct 1281 GAAAGGCGTTTAAAGCAGCAGCTGCTCCATCCGGTGCAAGTCTAGATGAATGCCG--GCG 1338
Query 1450 A-TAACCATCAACGCACTAAAAGTGAATGATACACTGTGTACACACATGAAATGCACATT 1508
| || | || || ||||| ||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 1339 AGTAGCTATTAATGCACTCAAAGTCAATGATTCACTGTGCACACACATGAAATGCACATT 1398
Query 1509 CGGAGGAGTCTGGAATGGTGGTCGAGGTGGTGGTCAAAAGAATATGTTTGTTGCTTCTTT 1568
||| ||||| ||||||||||| | |||||||| || ||||| |||||||| || || ||
Sbjct 1399 CGGTGGAGTATGGAATGGTGGAGGCGGTGGTGGCCAGAAGAAAATGTTTGTGGCATCATT 1458
Query 1569 TTTCTTCGATCGTGCTGCTGAGGCTGGATTCGTTGACCCGAAGCAACCTGTTGCTACA-G 1627
|||||| ||||| ||||| |||||||| || |||||||| ||||||| ||| ||| | |
Sbjct 1459 TTTCTTTGATCGAGCTGCAGAGGCTGGTTTTGTTGACCCAAAGCAACATGTGGCT-GAGG 1517
Query 1628 TTCGTCCCA-TGGACTTTGAGAAAGCAGCAAAGAAAGCTTGTAGTATGAAG-CTGGAAG- 1684
|||| ||| | |||||||||||||| || || ||||||||||| ||| || ||||||
Sbjct 1518 TTCG-ACCACTTGACTTTGAGAAAGCGGCCAACAAAGCTTGTAGCATG-AGAATGGAAGA 1575
Query 1685 AGGGAAAATC-AACGTTCCCACTTGTGGAGGAAGAGAATTTGCCTTACTTGTGCATGGAT 1743
|||| ||||| || |||||||| |||||||||||| ||| |||||||||||||| |||||
Sbjct 1576 AGGG-AAATCGAA-GTTCCCACATGTGGAGGAAGATAATCTGCCTTACTTGTGCTTGGAT 1633
Query 1744 CTCGTTTACCAATATACTCTGCTCATTGATGGATTCGGATTGGAGCCATCACAGACAATA 1803
|| ||||||||||||||||| || | |||||||| |||||| |||||||||||||||||
Sbjct 1634 CTTGTTTACCAATATACTCTTCTGGTCGATGGATTTGGATTGAAGCCATCACAGACAATA 1693
Query 1804 ACGTTAGTGAAGAAGGTCAAATACGGAGACCAAGCCGTGGAAGCTGCGTGGCCATTGGGT 1863
||||||||||||||||| ||||||||||| | ||||||||||||||||||||| | ||
Sbjct 1694 ACGTTAGTGAAGAAGGTGAAATACGGAGATTACGCCGTGGAAGCTGCGTGGCCACTAGGA 1753
Query 1864 AGCGCCATCGAGGCCGTATCCTCACCGTGAGG 1895
|||||||| || || ||||||||||| |||||
Sbjct 1754 AGCGCCATAGAAGCAGTATCCTCACCATGAGG 1785
Score = 307 bits (166), Expect = 2e-82
Identities = 282/337 (84%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 307 GACGGAGGTAAGATGACGGCGAAGCGTGGGATTGGACGGCACGAATCTCTTGCTGACAAG 366
|||||||| || |||||||||||||| | ||| |||||||||||||| ||||||||||||
Sbjct 356 GACGGAGGGAAAATGACGGCGAAGCGAGCGATCGGACGGCACGAATCCCTTGCTGACAAG 415
Query 367 ATCCAACGCCATCGTGGGATTATACTTGTGATTTCGGTTCCCATTGTGTTGATCGGTCTC 426
|||| || |||||||| || |||||||||||||| |||||||||||||||| | |||
Sbjct 416 GTCCATCGACATCGTGGTCTTCTACTTGTGATTTCGATTCCCATTGTGTTGATAGCTCTT 475
Query 427 GTTCTTCTGCTAATGCCTGGGA-GATCGATTTCTGAT-TCCGTCGTTGAAGAGTATTCTG 484
|| |||||| ||||||| |||| | |||| || | | || ||| || ||||| | |
Sbjct 476 GTGCTTCTGTTAATGCCGGGGACG-TCGACGTCCG-TCTCTGTCATT---GAGTACAC-G 529
Query 485 -TGCATAATCGCAAAGGAGGTCCTAATTCGAGAGGTCCGAAGAATTACGCTGTGATTTTT 543
|| | || | | | |||||| | ||||| || ||||| |||||||||||||||||||||
Sbjct 530 ATGAAAAAACACGAGGGAGGTTCGAATTCCAGGGGTCCCAAGAATTACGCTGTGATTTTT 589
Query 544 GATGCTGGAAGTTCTGGTAGCCGTGTACATGTTTACTGTTTTGATCAGAATTTGGATCTT 603
||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 590 GATGCTGGAAGTTCTGGAAGCCGTGTGCATGTTTACTGTTTCGATCAGAATTTAGATCTT 649
Query 604 ATTCCTCTTGG-GAATGAACTTGAGCTCTTCTTACAG 639
||||| |||| |||||| || |||||||||||||||
Sbjct 650 GTTCCT-TTGGAGAATGAGCTCGAGCTCTTCTTACAG 685
> Ahg356408 jgi|Araly1|356408|fgenesh1_pg.C_scaffold_8000195
Length=474
Score = 320 bits (173), Expect = 3e-86
Identities = 213/232 (92%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 119 TCCAG-ATC-AAATCCGGCGATTCAAGCCGC-TTTCCCAAATTCACCGTCGATCTGGAGC 175
||||| ||| |||||| ||||||||| ||| | | |||||| |||| ||||||||||||
Sbjct 233 TCCAGAATCAAAATCCACCGATTCAAGTCGCATCTACCAAATCCACCATCGATCTGGAGC 174
Query 176 CGTTACAGGATCCGCCGCAGACCACGGCGTCCTCCGGTACCGGCAACGGCAACGGTAAGA 235
| | ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 173 CATGACAAGATCCGCCGCAGGCCACGGCGTCCTCCGGTACCGACAACGGCAACGGTAAGA 114
Query 236 TACGCTACCGTTCGCCTTCTTCCACTGAGCTCCTGGAGTCTGGTAACCATTCTCCTACAT 295
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 113 TACGCTACCGTTCGCCTTCTTCCACTGAGCTCCTGGAGTCTGGAAACCATTCTCCTACAT 54
Query 296 CCGACTCTGTTGACGGAGGTAAGATGACGGCGAAGCGTGGGATTGGACGGCA 347
|||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 53 CCGACTCTGTTGACGGAGGTAATAAGACGGCGAAGCGTGAGATTGGACGGCA 2
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81970207240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5