BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G18290.1 Length=1195 Score E Sequences producing significant alignments: (Bits) Value Ahg326244 jgi|Araly1|326244|fgenesh1_pm.C_scaffold_6001464 1197 0.0 > Ahg326244 jgi|Araly1|326244|fgenesh1_pm.C_scaffold_6001464 Length=732 Score = 1197 bits (648), Expect = 0.0 Identities = 704/732 (96%), Gaps = 0/732 (0%) Strand=Plus/Plus Query 294 ATGAGTGCGGTAAAATCGGCGTTAGGTGATATGGTGATAACCTTTTTGTGGGTTATTCTC 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGTGCGGTAAAATCGGCGTTAGGTGATATGGTGATAACCTTTTTGTGGGTTATTCTC 60 Query 354 TCGGCGACGTTTGGGATACAGACGGCGGCGATTGTTTCCGCCGTAGGGTTTCATGGTATC 413 ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||| Sbjct 61 TCGGCGACGTTTGGGATTCAGACGGCGGCGATTGTTTCCGCAGTCGGGTTTCATGGCATC 120 Query 414 ACTTGGGCTCCTCTTGTGATCTCAACGTTGGTTGTTTTTGTCTCCATCTCGATTTTTACG 473 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 121 ACTTGGGCTCCTCTGGTGATCTCAACGTTGGTTGTTTTTGTCTCCATATCGATTTTTACG 180 Query 474 GTTATTGGAAACGTTCTTGGTGGTGCTAGCTTCAATCCTTGTGGAAACGCAGCGTTTTAT 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTTATTGGAAACGTTCTTGGTGGTGCTAGCTTCAATCCTTGTGGAAACGCAGCGTTTTAT 240 Query 534 ACCGCCGGTGTTTCCAGTGATTCTCTCTTCTCCTTGGCCATTAGATCTCCTGCTCAGGCA 593 |||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 241 ACCGCCGGAGTTTCCAGAGATTCTCTATTCTCCTTGGCGATTAGATCTCCTGCTCAGGCT 300 Query 594 ATTGGTGCGGCAGGCGGTGCGATAACGATCATGGAGATGATACCGGAAAAGTATAAGACT 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTTGGTGCGGCAGGCGGTGCGATAACGATCATGGAGATGATACCGGAAAAGTATAAGACG 360 Query 654 AGGATTGGAGGAAAGCCTTCATTGCAATTTGGTGCACACAATGGAGCTATTTCTGAAGTG 713 | ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 361 AAGATTGGAGGAAAGCCTTCATTGCAAGTTGGTGCACACAATGGAGCTATTGCTGAAGTG 420 Query 714 GTCCTAAGTTTTAGTGTTACATTTTTGGTTTTACTAATTATCCTAAGAGGTCCTCGAAAA 773 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 421 ATCCTAAGTTTTAGTGTTACATTTTTGGTGTTACTAATTATCCTAAGAGGTCCTCGAAAA 480 Query 774 CTGCTCGCGAAAACGTTCTTGCTCGCACTCGCTACCGTATCGGTGTTTGTCGTAGGTTCT 833 ||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 481 CTGCTAGCTAAAACGTTCTTGCTCGCTCTCGCTACCGTATCAGTGTTTGTCGTAGGATCT 540 Query 834 AAATTCACTAGACCATTCATGAATCCTGCCATTGCGTTTGGGTGGGCATATATCTACAAG 893 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 541 AAATTCACTAGACCATTCATGAATCCTGCCATTGCATTTGGGTGGGCATATATATACAAG 600 Query 894 TCTCACAACACATGGGACCATTTTTATGTGTATTGGATCAGCTCCTACACCGGAGCTATT 953 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 601 TCTCACAACACATGGGACCATTTCTATGTGTATTGGATCAGCTCCTACACCGGAGCTATT 660 Query 954 TTATCTGCGATGCTCTTTAGAATTATATTTCCGGCTCCACCTCTGGTTCagaaaaaacag 1013 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 661 TTATCTGCGATGCTCTTTCGAATTCTATTTCCGGCTCCACCTCTGGTTCAGAAAAAACAG 720 Query 1014 aagaaagcttga 1025 |||||||||||| Sbjct 721 AAGAAAGCTTGA 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44603812890 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5