BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18290.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326244 jgi|Araly1|326244|fgenesh1_pm.C_scaffold_6001464 1197 0.0
> Ahg326244 jgi|Araly1|326244|fgenesh1_pm.C_scaffold_6001464
Length=732
Score = 1197 bits (648), Expect = 0.0
Identities = 704/732 (96%), Gaps = 0/732 (0%)
Strand=Plus/Plus
Query 294 ATGAGTGCGGTAAAATCGGCGTTAGGTGATATGGTGATAACCTTTTTGTGGGTTATTCTC 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTGCGGTAAAATCGGCGTTAGGTGATATGGTGATAACCTTTTTGTGGGTTATTCTC 60
Query 354 TCGGCGACGTTTGGGATACAGACGGCGGCGATTGTTTCCGCCGTAGGGTTTCATGGTATC 413
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||
Sbjct 61 TCGGCGACGTTTGGGATTCAGACGGCGGCGATTGTTTCCGCAGTCGGGTTTCATGGCATC 120
Query 414 ACTTGGGCTCCTCTTGTGATCTCAACGTTGGTTGTTTTTGTCTCCATCTCGATTTTTACG 473
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ACTTGGGCTCCTCTGGTGATCTCAACGTTGGTTGTTTTTGTCTCCATATCGATTTTTACG 180
Query 474 GTTATTGGAAACGTTCTTGGTGGTGCTAGCTTCAATCCTTGTGGAAACGCAGCGTTTTAT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTATTGGAAACGTTCTTGGTGGTGCTAGCTTCAATCCTTGTGGAAACGCAGCGTTTTAT 240
Query 534 ACCGCCGGTGTTTCCAGTGATTCTCTCTTCTCCTTGGCCATTAGATCTCCTGCTCAGGCA 593
|||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 241 ACCGCCGGAGTTTCCAGAGATTCTCTATTCTCCTTGGCGATTAGATCTCCTGCTCAGGCT 300
Query 594 ATTGGTGCGGCAGGCGGTGCGATAACGATCATGGAGATGATACCGGAAAAGTATAAGACT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGGTGCGGCAGGCGGTGCGATAACGATCATGGAGATGATACCGGAAAAGTATAAGACG 360
Query 654 AGGATTGGAGGAAAGCCTTCATTGCAATTTGGTGCACACAATGGAGCTATTTCTGAAGTG 713
| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 361 AAGATTGGAGGAAAGCCTTCATTGCAAGTTGGTGCACACAATGGAGCTATTGCTGAAGTG 420
Query 714 GTCCTAAGTTTTAGTGTTACATTTTTGGTTTTACTAATTATCCTAAGAGGTCCTCGAAAA 773
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATCCTAAGTTTTAGTGTTACATTTTTGGTGTTACTAATTATCCTAAGAGGTCCTCGAAAA 480
Query 774 CTGCTCGCGAAAACGTTCTTGCTCGCACTCGCTACCGTATCGGTGTTTGTCGTAGGTTCT 833
||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 481 CTGCTAGCTAAAACGTTCTTGCTCGCTCTCGCTACCGTATCAGTGTTTGTCGTAGGATCT 540
Query 834 AAATTCACTAGACCATTCATGAATCCTGCCATTGCGTTTGGGTGGGCATATATCTACAAG 893
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 541 AAATTCACTAGACCATTCATGAATCCTGCCATTGCATTTGGGTGGGCATATATATACAAG 600
Query 894 TCTCACAACACATGGGACCATTTTTATGTGTATTGGATCAGCTCCTACACCGGAGCTATT 953
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCACAACACATGGGACCATTTCTATGTGTATTGGATCAGCTCCTACACCGGAGCTATT 660
Query 954 TTATCTGCGATGCTCTTTAGAATTATATTTCCGGCTCCACCTCTGGTTCagaaaaaacag 1013
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 TTATCTGCGATGCTCTTTCGAATTCTATTTCCGGCTCCACCTCTGGTTCAGAAAAAACAG 720
Query 1014 aagaaagcttga 1025
||||||||||||
Sbjct 721 AAGAAAGCTTGA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5