BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G18300.1

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488703 jgi|Araly1|488703|fgenesh2_kg.6__1837__AT5G18300.1         540    4e-153


> Ahg488703 jgi|Araly1|488703|fgenesh2_kg.6__1837__AT5G18300.1
Length=432

 Score =  540 bits (292),  Expect = 4e-153
 Identities = 394/442 (89%), Gaps = 11/442 (2%)
 Strand=Plus/Plus

Query  4    ATGCCGATGACTGAAGAATTTTACGATGAAGAGGAAGAGCTTGGTT-GCTTTAGATTTAA  62
            ||| |||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  1    ATGTCGATGGTTGAAGAATTTTACGATGAAGAGGAAGAGC-TGGTTGGCTTTAGATTTAA  59

Query  63   TCCTTCAGAAGAAGAACTCATACTCGATTATCTTCTACCAAAGCTTGGCTTCCACCAACC  122
            ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct  60   TCCTTCAGAAGAAGAACTCATACTCGACTATCTTCTACCTAAGCTTGGCTTCTACCAACC  119

Query  123  AAACACGATATATTTGTTAGAAGACAGGGACAACATCTACGCCAAAGAGCCGTGGCGGCT  182
            ||| ||||||||||| |||||||||| |||| | ||||||||||||| ||||||||||||
Sbjct  120  AAAAACGATATATTTATTAGAAGACAAGGACGAGATCTACGCCAAAGTGCCGTGGCGGCT  179

Query  183  TAATCACACAGAGAATGATATCTTTGAACCTAACGAGTGGTTTTATTTCGTGAAAAGGAC  242
            ||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||
Sbjct  180  TAAACACACAGAGAATGGTATTTTTGAACCTAACGAGTGGTTTTACTTCGTGAAAAAGAC  239

Query  243  AAATCGCAAAGTTAAAGGTTGGAAAGCCACTGGAGAGTTAAAAGATGTCGTGTCGAAGAA  302
            ||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||| || ||
Sbjct  240  AAACCGCAAAGTTAAAGGTTGGAAAGCCACTGGAGGGTTGAAAGATGTCTTGTCCAAAAA  299

Query  303  AACCGGTGAAGTGATCGGGAAGAAGAGGAATCTCAGGTTCTACGTTGAAGGTGATGAGAG  362
            || |||| ||||||| ||||||||||| |||| ||| |||||||||||||||||  |  |
Sbjct  300  AAACGGTAAAGTGATTGGGAAGAAGAGAAATCGCAGTTTCTACGTTGAAGGTGA--AC-G  356

Query  363  CAAAACGAGTGGTTGGACCATGAGGGAGTATTCTTCCATTGGCAATCAAAACCAACGTCT  422
                  |||||||||||||||||  |||||||||||||| ||||| |||||||||| |||
Sbjct  357  ------GAGTGGTTGGACCATGACAGAGTATTCTTCCATCGGCAACCAAAACCAACTTCT  410

Query  423  CTGCCACCTTAAAGGACCATGA  444
            ||||||||| |||||||| |||
Sbjct  411  CTGCCACCTCAAAGGACCGTGA  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16025347380


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5