BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18310.2
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488704 jgi|Araly1|488704|fgenesh2_kg.6__1838__AT5G18310.2 1011 0.0
> Ahg488704 jgi|Araly1|488704|fgenesh2_kg.6__1838__AT5G18310.2
Length=758
Score = 1011 bits (547), Expect = 0.0
Identities = 712/785 (91%), Gaps = 38/785 (5%)
Strand=Plus/Plus
Query 19 gagagagagagagatagaaagagaaagaAATCGTCATGGCTCATGGGAGATATGATACTT 78
|||||||||| || |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2 GAGAGAGAGATTGAAAGAAAGAGAAAGAAATCGCCATGGCTCATGGGAGATATGATAATT 61
Query 79 ACAAGAAGAAAAGTGGACAGATTCCTCGGTTTGGAGAATGGGAAGAAGCAAATGAGATGC 138
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 62 ACAAGAAGAAAAGTGGACAGATTCCTAGGTTTGGAGAATGGGAGGAAGCAAATGAGATGC 121
Query 139 CAATAACACAATACTTTGAGAATCCAAGACAAGCTGGTCTGATTCGTCACCAATACACAA 198
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 122 CAATAACACAATACTTCGAGAATCCAAGACAAGCTGGTCTGATTCGTCACCATTACACAA 181
Query 199 CAActtcttctgcttcttccactaccacttcatcttcatcttcttcttcttcttctGCAG 258
| |||||||||||||||||||||||||| | | |||| || |||||||||||||||||||
Sbjct 182 CCACTTCTTCTGCTTCTTCCACTACCAC-T-A-CTTCTTCATCTTCTTCTTCTTCTGCAG 238
Query 259 AAGCCTTAAAGCTTGCTTCTCACCATCCCCGTCCACGTCACCTCCACGCTCAAAGACAGA 318
||||| |||||||||||||| || | ||| | || || || ||||||||
Sbjct 239 AAGCCCTAAAGCTTGCTTCT---CA--------C-CGT---C-CC-CG-TCCAAGACAGA 280
Query 319 CGGCGGGGACGAAGGAGAAAAGAGGACCACAAAGGCGTGTGCGTGACGTCAGTGCACAGT 378
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CGGCGGGGACGAAGGAAAAAAGAGGACCACAAAGGCGTGTGCGTGACGTCAGTGCACAGT 340
Query 379 CGGACAAGTATTACATTGACGTCAACGGTGTTAAGCAGTTCAAAAACGACGTTGCTCTGA 438
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 341 CGGACAAGTATTACATTGACGTCAACGGTGTTAAGCAGTTCAAAAACGACGTCGCTCCGA 400
Query 439 CTT-GTAAGCCACCTAAGCCCGTTGATGAAGATCTCTACAAGATTCCTCCTGAGTTTATC 497
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CTTCG-AGGCCACCTAAGCCCGTTGATGAAGATCTCTACAAGATTCCTCCTGAGTTTATT 459
Query 498 CATTCTTCAACAAGGAAGAGAAGGCCTAGCTTTTTAGCTTGTTTGGTTCCATGCGCATGA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CATTCTTCAACAAGGAAGAGAAGGCCTAGCTTTTTAGCTTGTTTGGTTCCATGCGCATGA 519
Query 558 ATCgaaaagg-a-a--ga-gcgaagaagaagaagaaaaagTAGGATCATGAATGAATAAT 612
|| || |||| | | || | |||||||||||| ||||| |||||| | |||||||||||
Sbjct 520 ATTGAGAAGGGAGAATGAAGAGAAGAAGAAGAATAAAAAATAGGATTACGAATGAATAAT 579
Query 613 GTAAtttgttttttgttttt-GTAATTTCATCCTAATATACAGATATGATATATACGTGG 671
||||||| |||||||||||| || |||||| ||||||||| |||||||||||||||||
Sbjct 580 GTAATTTTTTTTTTGTTTTTTGTTTTTTCATT-TAATATACATATATGATATATACGTGG 638
Query 672 TTTGACAGAAAAAGAGAGCATACGAGTGGTTTTTGA--AAAAG-AGTAACAAAGTAATAT 728
|||| |||||||||||||||||||| |||||| || ||||| ||||||||||||||||
Sbjct 639 TTTGGCAGAAAAAGAGAGCATACGAATGGTTTA-GAGTAAAAGGAGTAACAAAGTAATAT 697
Query 729 CGTAGTAAACTAGAGTAATATATCCTTTTGTCTTGTTACATATCTACTTTATAAGATTTT 788
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 698 CGTAGTAAACTAGAGTAAT----CCTTTTGTCTTGTTACATATCTACTTTATAAGATTTT 753
Query 789 CTCTC 793
||||
Sbjct 754 ATCTC 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29278400256
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5