BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18320.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893752 jgi|Araly1|893752|Al_scaffold_0006_1748 2006 0.0
Ahg893755 jgi|Araly1|893755|Al_scaffold_0006_1751 977 0.0
Ahg350938 jgi|Araly1|350938|fgenesh1_pg.C_scaffold_6001531 887 0.0
Ahg941356 jgi|Araly1|941356|scaffold_601900.1 815 0.0
> Ahg893752 jgi|Araly1|893752|Al_scaffold_0006_1748
Length=1377
Score = 2006 bits (1086), Expect = 0.0
Identities = 1284/1381 (93%), Gaps = 8/1381 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATTCGACGGAAACAAACGCCGATACTCTGCGGCGGGAGTTACAGAAAGTATTG 60
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGACGCGACGGAAACGAACGCCGATACTCTGCGGCGGGAGTTACAGAAAGTATTG 60
Query 61 ACGGAGATTTTGAACGACGGAGGAGGCAATGATCGCGATGAGACTGAAGCTT-TTTCTGG 119
||||||||||| ||||||||||| ||||| | ||||| ||||||||||| || ||| |||
Sbjct 61 ACGGAGATTTTTAACGACGGAGGGGGCAAAGGTCGCGGTGAGACTGAAGATTGTTT-TGG 119
Query 120 AGTTGTGAAAGCGATTGATGAAGCGGTTAGAATCCTGACTTGTCTGAGGAAAGTAGAATC 179
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 AGTTTTGAAAGCGATTGATGAAGCGATTAGAATCCTGACTTGTCTGAGGAAAGTAGAATC 179
Query 180 GAAGATACCGGAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGTTTATATGTACACT 239
||||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 180 GAAGAAACCGGAATTTGATATTTCTCCGGTGGAAGTTCCCAAAGAGTTTATATGTACACT 239
Query 240 CTCCAATACGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAGACGTATGAAAAGAG 299
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 240 CTCTAATACGATCATGATCGAGCCTGTGATCATAGCTTCTGGGCAGACTTATGAAAAGAG 299
Query 300 ATATATCACAGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAACAAGTCCTTTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 300 ATATATCACAGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAACAAATCCTCTC 359
Query 360 TCACCGTCTT-TGGATACCAAACCATTTGATCAGTGACTTGATTACGCAATGGTGCCTTG 418
|||| || || |||||||||||||||||||||| ||| ||||||||||||||||| | |
Sbjct 360 TCACTGT-TTGTGGATACCAAACCATTTGATCAATGAGTTGATTACGCAATGGTGTCGAG 418
Query 419 TTAACAAA-TATGATCATCAAAAACCATCTGATGAATTAGTCGCTGAGCTGTTCACTAGT 477
|||||||| | ||||| |||||||||||||||||||||| | |||||||||||||| ||
Sbjct 419 TTAACAAAGT-TGATCGGCAAAAACCATCTGATGAATTAGCCACTGAGCTGTTCACTGGT 477
Query 478 GACATAGAAGCATTGCTACAGCGGGTTTCCTCTTCCTCCTCTGTTGCAGATCAGATAGAA 537
||||| ||||||||||| |||||| |||| ||||||||||| || || ||||||||||||
Sbjct 478 GACATCGAAGCATTGCTTCAGCGGATTTCATCTTCCTCCTCGGTCGCGGATCAGATAGAA 537
Query 538 GCTGCAAAAGAGCTGCGTCACCAGACCAAGAAATTTCCTAATGTTCGGGTCTTCTTTGTC 597
||||||||||||||||||| |||||| |||| |||||||||||| || ||||||||||||
Sbjct 538 GCTGCAAAAGAGCTGCGTCGCCAGACGAAGAGATTTCCTAATGTCCGAGTCTTCTTTGTC 597
Query 598 GCTGGAATCCATGATTCTATCACCCGTTTGCTCAGTCCGCTCTCTACTTTGGACGAGGCA 657
||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 598 GCTGGAATCCATGATTCGATCACCCGTTTGCTCAGTCCGCTCTCTGCTTTGGGCGAGGCA 657
Query 658 GTAGACTCTAGTCTC-GAGCTTCAAGAGAATATTGTCACAGCTTTGTTCAACCTCTCGAT 716
|||||||| | || | |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 658 GTAGACTCGAATC-CAGAGCTTCAAGAGAATATTATCACAGCATTGTTCAACCTCTCGAT 716
Query 717 TCTTGAGAGTAATAAAACAGTGATTGCTGAAAACTGTCTAGTGATCCCTCTGCTTACAAA 776
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 717 TCTTGAGAATAATAAAACAGTGATTGCTGAAAACCGTCTAGTGATCCCTCTGCTCACAAA 776
Query 777 GTCTTTGAAGCAGGGGACAGATGAGACACGAAGAAACGCTGCTGCGACTTTATCATCACT 836
|||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||
Sbjct 777 GTCTTTGAAGCAGGGGACAGCTGAGACACGAAGAAACGCTGCAGCTACTTTATCGTCACT 836
Query 837 TTCAGCCATTGATTCTAACAAGATCATTATTGGGAACTCGGAAGCGGTAAAGGCTTTGAT 896
||||||||||||||||||||||||||| ||||||| ||||||||| | | |||| ||||
Sbjct 837 TTCAGCCATTGATTCTAACAAGATCATCATTGGGAGCTCGGAAGCACTCAGGGCTCTGAT 896
Query 897 TGATCTTATCGAAGAGGGTGATTTGTTAGCTACCAAAGAAGCCACTTCCACTGTCTTTAA 956
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 897 TGATCTTATCGAAGAGGGTGATTTGTTAGCCACCAAAGAAGCCACTTCCACGGTCTTTAA 956
Query 957 CCTCTGTATTGTACTGGAGAACAAGGGAAAGGTTGTTTCAGCGGGTTTGATTCATGCGGC 1016
|||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||
Sbjct 957 CCTCTGTATTGTACTGGAGAACAAGGAAAAGGCGGTTTCAGCGGGTTTGATTCCTGCAGC 1016
Query 1017 AACCAAAAAGATCAAAGCAGGAAGCAATGTGGATGAGTTGTTATCTCTCTTGGCATTGAT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AACCAAAAAGATCAAAGCAGGAAGCAATGTGGATGAGTTGTTATCTCTCTTGGCATTGAT 1076
Query 1077 ATCTACACACAACCGGGCTGTTGAAGAAATGGATAAACTAGGGTTTATCTATGATCTGTT 1136
|||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1077 TTCTACACACAACAGGGCTATCGAAGAAATGGATAATCTAGGGTTTATCTATGATCTGTT 1136
Query 1137 CAGTATCTTGAGGAAGCCGAGTAGCTTGCTGACTGGTGAGAACGCTGTAGTGATCGTCTT 1196
|| ||||||||||| |||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1137 CAAAATCTTGAGGAAACCGAGTTGCTTGCTGACCGGAGAGAACGCTGTAGTGATCGTCTT 1196
Query 1197 CAACATGTATGACAGAAACAGAGACAGGTCCAGACTGAAAGTGGTAGGAGAAGAGGAGAA 1256
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 CAACATGTGTGACAGAAACAGAGACAGGTCGAGACTGAAAGTGGTAGGAGAAGAGGAGAA 1256
Query 1257 TCAACACGGGACATTTACGAAGCTTGCGAAGCAAGGATCAGTTCGTGCAGCGAGAAAAGC 1316
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1257 TCAACACGGGACATTTACGAAGCTTGCAAAGCAAGGATCAGTTCGTGCGGTGAGAAAAGC 1316
Query 1317 ACAAGGGATATTACAGTGGATAAAGAGATTCGTTACTGGTAAAGAGCCACAGAGGGCATG 1376
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ACAAGGGATTTTACAGTGGATTAAGAGATTCGTTACTGGTAAAGAGCCACAGAGGGCATG 1376
Query 1377 A 1377
|
Sbjct 1377 A 1377
> Ahg893755 jgi|Araly1|893755|Al_scaffold_0006_1751
Length=1407
Score = 977 bits (529), Expect = 0.0
Identities = 1152/1437 (80%), Gaps = 106/1437 (7%)
Strand=Plus/Plus
Query 3 GGCGGATTCGACGGAAACAAACGCCGATACTCT--G-C---GGCGGGAGTT-ACAGAAAG 55
|||||| |||||||||||||||| |||||||| | | |||||||||| | |||| |
Sbjct 15 GGCGGACGCGACGGAAACAAACGCAGATACTCTGAGTCTGAGGCGGGAGTTGA-AGAAGG 73
Query 56 TATTGACGGAGATTTTGA-ACGACGGA-GGAGGCAATGATCGCGATGAGACTGAAGCTTT 113
|| ||||||||| ||| | ||||| || ||||| | | | | | ||| || ||
Sbjct 74 TACTGACGGAGAATTT-ATACGAC-GACGGAGG--A-G-T--C-A-AAGA-TG--GC--- 117
Query 114 TTCTGGAG-TTGTGAAAGCGATTGATGAAGCGGTTAGAATCCTGACTTGTCTGAGGAAAG 172
| | ||| ||||||| |||||||||| ||| |||||||||||| |||||||| ||||
Sbjct 118 GT-T-GAGACTGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATTGTCTGA--AAAG 173
Query 173 TAGAATCGAAG-A----TA-CCGGAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGT 226
|||||||||| | | | ||||||||||||||||||||||||||| ||||||||||
Sbjct 174 -AGAATCGAAGAAGCGGAAGCGGGAATCTGATATTTCTCCGGTGGAAGTTCCGAAAGAGT 232
Query 227 TTATA-TGTACACTCTCCAATACGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAG 285
| | | |||||||||||||| |||||||||||||| ||| |||||||| |||||||||||
Sbjct 233 TCA-AGTGTACACTCTCCAAGACGATCATGATCGATCCTTTGATCATTTCTTCTGGGCAG 291
Query 286 ACGTATGAAAAGAGATATATCACAGAGTGGCTGAAGCATGAAC-GTACATGTCCCAAAAC 344
|||||||||||||||||||||||||| ||||| || ||| ||| ||||||||||||||||
Sbjct 292 ACGTATGAAAAGAGATATATCACAGAATGGCTCAACCAT-AACCGTACATGTCCCAAAAC 350
Query 345 CAAACAAGTCCTTTCTCACCGTCT-T-TGGATACCAAACCATTTGATCAGTGACTTGATT 402
|||| || |||| ||||| ||| | || | ||| ||||||||||||| ||||||||||
Sbjct 351 CAAAGAACTCCTCTCTCAA-GTCCGTATG-ACACCCAACCATTTGATCAATGACTTGATT 408
Query 403 ACGCAATGGTGCCTTGTTAACAA-ATA-T-GATCATC-AAAA--AC--C-ATCTGAT--- 450
||||||||||| ||||||||||| | | | |||| | |||| || | |||||||
Sbjct 409 ACGCAATGGTGTCTTGTTAACAACAAAGTTGATCGGCCAAAACCACAACCATCTGATTTT 468
Query 451 GAATTAGTCG---CTGAGCTGTTCACTAGTGACATAGAAGCATTGCTACAGCGGGTTTCC 507
||| |||| | ||||| || ||||| ||||||| ||| ||||||| |||||| |||||
Sbjct 469 GAAATAGTAGTAACTGAGATGGTCACTGGTGACATCGAACCATTGCTTCAGCGGATTTCC 528
Query 508 TCT--T-CCTCCTCTGTTGCAGATCAGATAGAAGCTGCAAAAGAGCT-GCGTCACCAGAC 563
||| | ||||||| |||||||||||||| ||||||||||||||||| || | ||| ||
Sbjct 529 TCTCCTTCCTCCTCGGTTGCAGATCAGATGGAAGCTGCAAAAGAGCTTGCC-CTCCAAAC 587
Query 564 CAAGAAATTTC-CTAATGTTCGGGTCTTCTTTGTCGCTGGAATCCATGATTCTATCACCC 622
| ||||||| | ||||| || | |||||||||||| ||||| |||||| ||||||
Sbjct 588 CTCGAAATTTGTC-AATGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCCATCACCA 646
Query 623 GTTTGCTCAGTCCGCTCTCTACTTTGGACGAGG-CAGTAGACTCTAGTCTCGAGCTTCAA 681
| ||||||| ||| |||||| ||||| ||| | | |||||||| | || ||||||||||
Sbjct 647 GGTTGCTCACTCCTCTCTCTGTTTTGGGCGATGAC-GTAGACTCGAATCCCGAGCTTCAA 705
Query 682 GAGAATATTGTCACAGCTTTGTTCAACCTCTCGA-TTCTTGAG-AGTAATAAAACAGTGA 739
||||||||| ||||| | ||||||||| | || | || ||||| || ||||||||| | |
Sbjct 706 GAGAATATTATCACATCATTGTTCAACATGTCTACTT-TTGAGCAG-AATAAAACACT-A 762
Query 740 -TTGCTGAAAACTGTCTAGTGATCCCTCTGCTTACAAAGTCTTTGAAGCAGGGGACAGAT 798
||||||||||| || ||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 763 CTTGCTGAAAACCCTCAAGTGATCCCACTGCTTGCAAAGTCTTTGAAGCAGGGGACAGTT 822
Query 799 GAGACACGAAGAAACGCTGCTGCGACTTTA-TCATCACTTTCAGCCATTGATTCTAACAA 857
| |||||||||||||||||| ||||||||| | |||||| ||| |||||||||||||||
Sbjct 823 GTGACACGAAGAAACGCTGCAGCGACTTTAATG-TCACTTGCAGACATTGATTCTAACAA 881
Query 858 GATCATTATTGGGAACTCGGAAGCGGTAAAGGCTTTGATTGATCTTATCGAAGAG--GG- 914
|||||| || |||||||||||||| | |||||| |||| ||||| ||| || ||
Sbjct 882 GATCATCATAGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAATCTTGGACTCGGA 941
Query 915 TGATTTGTTAGCTACCAAAGAAGCCACTTCCACTGTCTTTAA-CCTCTGTATTG-T-ACT 971
||| || | ||| ||||| ||||| || | || | ||||| ||||||| ||| | | |
Sbjct 942 TGACTTATCAGCCACCAATGAAGCTGCTAACGCTAT-TTTAAACCTCTGTTTTGATGAAT 1000
Query 972 -GGAGAACAAGGGAAA-GGTTGTTTCAGC-GGGTTTGA-TTCATGCGGCAACCAAAAAGA 1027
||||||| | ||| || | || | ||| ||| ||| ||| | ||||||||| |
Sbjct 1001 CGGAGAACT-GCAAAAAGGCAATCTC-GTTGGGGTTGGCTTC-TGCCGTAACCAAAAATA 1057
Query 1028 TCAAAGCAGGAAGCAATGTGGATGAGTTGTTATCTCTCTTGGCATTGATATCTACACAC- 1086
||||||||||||| |||||||||||||||||| || |||||| |||||| ||| |||||
Sbjct 1058 TCAAAGCAGGAAGAAATGTGGATGAGTTGTTAGCTGTCTTGGTATTGATCTCTCCACACG 1117
Query 1087 AACCGGGCTGTTGAAGAAATGGATAAACTAGGGTTTATCTATGATCTGTTCAGTATCTTG 1146
||| | | ||| || ||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct 1118 AAC-GTGTTGTCGAGGAAATGGATAATGTAGGGGTTATCTATGATCTGTTAAGTATCTTG 1176
Query 1147 AGGAAGCCGAGTAGCTTGCTGACTGGTGAGAACGCTGTAGTGATCGTCTTCAACATGTAT 1206
||||| | ||| |||| ||||| ||||||||| ||||||||| ||| ||||||||||
Sbjct 1177 AGGAAAACAAGTTCCTTGGTGACTTGTGAGAACGTTGTAGTGATTGTCCACAACATGTAT 1236
Query 1207 GACAGAAA-CAGAGACAGGTCCAGACTGAAAGTGG-TAGG-AGAAGAGGAGAATCAACAC 1263
| | ||| |||||| ||||| | ||||| | | || |||||||||||||||||||
Sbjct 1237 GTTA-AAAGCAGAGAAAGGTCTATTTTGAAA-TCCCT-GGCAGAAGAGGAGAATCAACAC 1293
Query 1264 GGGACATTTACGAAGCTTGCGAAGC-AAGGATCAGTTCGTGCAGCGAGAAAAGCACAAGG 1322
||||||||| |||||||| |||| ||| |||||||| || | | | | |||||||||
Sbjct 1294 AAGACATTTACAAAGCTTGC-AAGCCAAGAATCAGTTCTTGTGGTGGGGAGAGCACAAGG 1352
Query 1323 GATATTACAGTGG-ATAAAGAG-ATTCGTTACTGGTAAAGAGCCACAGAGGGCATGA 1377
||| |||||| || || | | | ||||| | ||||||||||| ||||||||||||||
Sbjct 1353 GATTTTACAG-GGTATTAGG-GCATTCGCTGCTGGTAAAGAGACACAGAGGGCATGA 1407
> Ahg350938 jgi|Araly1|350938|fgenesh1_pg.C_scaffold_6001531
Length=1416
Score = 887 bits (480), Expect = 0.0
Identities = 1031/1284 (80%), Gaps = 89/1284 (7%)
Strand=Plus/Plus
Query 132 GATTGATGAAGCGGTTAGAATCCTGACTTGTCTGAGGAAAGTAGAATCGAAGATA-CC-G 189
||||||||| || |||||||||||||||||||||||||| |||||||||||| | || |
Sbjct 111 GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGA-AGCCAG 169
Query 190 --GAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGTTTATATGTACACTCTCCAATA 247
||||||||||| |||||||||||||| || |||||||||||||||| |||||| || |
Sbjct 170 AAGAATCTGATATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTAAACTCTCGAAGA 229
Query 248 CGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAGACGTATGAAAAGAGATATATCA 307
|||||||||||| |||||| |||| |||||||| ||||| | ||||||||||||||||
Sbjct 230 GGATCATGATCGAACCTGTGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGATATATC- 288
Query 308 C-AGAGTGGCTGAAGCATGAACGTACATGTCCCAAAACCAAACAAGTCCTTT-CTCACCG 365
| ||||||| ||||||||||||||||||| |||| |||||||||||| |||| | |||||
Sbjct 289 CTAGAGTGGTTGAAGCATGAACGTACATGCCCCAGAACCAAACAAGTTCTTTAC-CACCG 347
Query 366 TCTTTGGATACCAAACCATTTGATCAGTGA-CTTGATTACGCAATGGTGCCTTGTTAACA 424
| |||||||||||||||||| ||||| || || |||| ||||||||| | || |||
Sbjct 348 TTTTTGGATACCAAACCATTCGATCAACGAGGTT-ATTATGCAATGGTGTCGAATTCACA 406
Query 425 AATATGATCATCAAAAACCATCTGATGAATTAGTCGCTGAGCTGTTCACTAGTGACATAG 484
| | ||||| | |||||||||||||||| |||| ||| ||||||||| ||||||| |
Sbjct 407 ACTTTGATCGGCCAAAACCATCTGATGAAGAAGTCATTGACCTGTTCACTGGTGACATTG 466
Query 485 AAGCATTGCTACAGCGGGTTTCCTCTTCC-TCCTCTGTTGCAGATCAGATAGAAGCTGCA 543
|| |||| || ||||| || |||| ||| ||||| |||| |||||||| ||||||||||
Sbjct 467 AATCATTCCTTCAGCGTATTACCTC-TCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCA 525
Query 544 AAAGAGC-TGCGTCACCAGACCAAGAAAT-TTCCTAATGTTCGGGTCTTCTTTGTCGCTG 601
||||||| ||| | |||| ||||| || | || | ||| || | ||||||||||||
Sbjct 526 AAAGAGCTTGC-CCGCCAGGTCAAGAGATATGCC-ACTGTCCGTGACTTCTTTGTCGCCA 583
Query 602 GAATCCATGATTCTATCACCCGTTTGCTCAGTCCGCTCTCTACTTTGGACGAGGCA-GTA 660
||||| |||||| |||||| | ||||||| || | ||||| ||| | | |||
Sbjct 584 AAATCCCTGATTCGATCACCAGGTTGCTCA-------CTGT--TTTGGGCGATG-AGGTA 633
Query 661 GACTCTAGT-CTCGAGCTTCAAGAGAATATTGTCACAGCTTTGTTCAACCTCTCGA-TTC 718
||||| | | || ||||||||||||||||| ||||| | ||||||||| | |||| ||
Sbjct 634 GACTCGAATCCT-GAGCTTCAAGAGAATATCATCACATCATTGTTCAACATGTCGACTT- 691
Query 719 TTGAG-AGTAATAAAACAGTGATTGCTGA-AAACTGTCTA-GTGATCCCTCTGCTTACAA 775
||||| || ||||||||| || ||||||| || | || | |||||||| ||||||||||
Sbjct 692 TTGAGAAG-AATAAAACACTGCTTGCTGAGAATC-CTC-ATGTGATCCCACTGCTTACAA 748
Query 776 AGTCTTTGAAGCAGGGGACAGATGAGACACGAAGAAA--CGCTGCTGCGACTTTATCATC 833
||||||||| | ||||||||||| | | || || ||| | |||| |||||| | | ||
Sbjct 749 AGTCTTTGAGGAAGGGGACAGATCA-A-ACAAAAAAAGTCTCTGCAGCGACTGTGTTTTC 806
Query 834 ACTTTCAGCCAT--TGATTCTAACAAGATCATTATTGGGAACTCGGAAGCGGTAAAGGCT 891
||||||| ||| |||||||||||||| ||| || |||||||||||||| | ||||||
Sbjct 807 ACTTTCA--CATACTGATTCTAACAAGAACATCATCGGGAACTCGGAAGCACTCAAGGCT 864
Query 892 TTGATTGATCTTA-TCGAAGAGGGTGATTTGTTAGCTACCAAAGAAGCCACTTCCACTGT 950
|||| |||| || ||||||||||||||| ||||| |||| |||||| |||| | |
Sbjct 865 CTGATAGATC-TAGTCGAAGAGGGTGATTCATTAGCCACCAGTGAAGCCTTTTCCGC-G- 921
Query 951 CTT--TAACCTCTGTATT-GTACTGGAGAACAAGGG-AAAGGTTGTTTCAGCGGGTTTGA 1006
||| ||| |||||| || ||| ||||| | |||| ||||| |||||||||||| |||
Sbjct 922 CTTGCTAATCTCTGT-TTAGTAAAGGAGATC-AGGGAAAAGGCAGTTTCAGCGGGTCTGA 979
Query 1007 TTCATGCGGCAACCAAAAAGATCAAAGCAGGAAGCAATGTGGATGAGTTGTTATC-TCTC 1065
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 980 TTCGTGCGGCAACCACAAAGATCAAAGCAGGAAGCAATGTGGATGTGTTGTTATCGT-TC 1038
Query 1066 TTGGCATTGATATCTACACACAACCGGGCTGTTGAAGAAATGGATAAACTAGGGTTTATC 1125
||||||| ||| ||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct 1039 TTGGCATCGATTTCTACACACAACCGGACTATCGAAGAAATGGATAACCTAGGGTTTATA 1098
Query 1126 TATGATCTGTTCAGTATCTTGAGGAAGC-CGAGTAGCTT-GCTGACTGGTGAGAACGCTG 1183
|||||||||||||||||||||||||| | | | |||||| | ||| || |||||||||
Sbjct 1099 TATGATCTGTTCAGTATCTTGAGGAA-CTCAAATAGCTTCG-TGAATGAAGAGAACGCTT 1156
Query 1184 TAGTGATCGTC-TTCAACAT--GTAT-G-A--CAGAAACA-GAGACA-G-G-TCCAG-AC 1231
|| |||||| || | ||| ||| | | |||| | | || | | | ||||| |
Sbjct 1157 TAACCATCGTCGTTTA-CATTTGTAAAGGATACAGAGGCTTGCGAGATGTGGTCCAGGAA 1215
Query 1232 T-G---A-A---A--GTGGTAGGAGAAGAGGAGAATCAACACGGGACATTTACGAAGCTT 1281
| | | | ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1216 GAGGCGACAGGGAATGTGGTCCTAGAAGAGGAGAATAAACACGGGACATTTACGAAGCTT 1275
Query 1282 GCGAAGCAAGGATCAG-TTCGTGCAGCGAGAAAAGCACAAGGGATATTACAGTGGATAAA 1340
|||||||||| | ||| || || | | |||||||||||||| ||| |||||||| || ||
Sbjct 1276 GCGAAGCAAGAAGCAGGTT-GTACGGTGAGAAAAGCACAAGCGATTTTACAGTGTATTAA 1334
Query 1341 GAGATTCGTT-ACTGGTAAAGAGC 1363
|| ||||| | | | |||||||||
Sbjct 1335 GACATTCGCTGA-TCGTAAAGAGC 1357
> Ahg941356 jgi|Araly1|941356|scaffold_601900.1
Length=1434
Score = 815 bits (441), Expect = 0.0
Identities = 1079/1373 (79%), Gaps = 100/1373 (7%)
Strand=Plus/Plus
Query 12 GACGGAAACAAACGCCGATACTCTGCGGCGGGAGTTACAGAAAGTATTGACGGAGATTTT 71
||||||| ||||||||||||||||| ||| |||||| || || ||| ||||||||||| |
Sbjct 32 GACGGAAGCAAACGCCGATACTCTGAGGCTGGAGTTGCACAAGGTACTGACGGAGATTGT 91
Query 72 GAACGACGGAGGAGGCAATGATCGCGATGAGACTGAAGCTTTTTCTGGAGTTGTGA---A 128
||||||||| ||| | || | || ||| | ||| | ||| ||||| || |
Sbjct 92 CCACGACGGAGTAGG--ACGA--G-GAGGAGGC-AAAG-ATCATCT--AGTTGAGACTGA 142
Query 129 AGCGATTGATGAAGC-GGT--TAGAATCCTGACTTGTC-TGAGGAAAGTAGAATCGAAGA 184
|| |||||||| || | | ||||||||| ||||||| || ||||||||||||| ||||
Sbjct 143 CGCAATTGATGAGGCTGTTACTAGAATCCTTACTTGTCTTG-GGAAAGTAGAATCCAAGA 201
Query 185 TACCGGAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGTTTATATGTACACTCTCCA 244
| | | | ||||||| ||| ||||||||||||||||||| |||||| |
Sbjct 202 -A---G---C--------CGCCGGTGGTAGTTCCGAAAGAGTTTATATGTAAACTCTCGA 246
Query 245 ATACGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAGACGTATGAAAAGAGATATA 304
| |||||||||||||| |||||||||||||||||||| ||||| | |||||||| | | |
Sbjct 247 AGACGATCATGATCGAACCTGTGATCATTGCTTCTGGCCAGACTTTTGAAAAGAAACACA 306
Query 305 TCACAGAGTGGCTGAAGCATGAAC-GTACATGTCCCAAAACCAAA-CAAGTCCTTTCTCA 362
||||| |||||||||||||| ||| |||||||||| |||||||| | |||||| |||||
Sbjct 307 TCACAAAGTGGCTGAAGCAT-AACACTACATGTCCCGAAACCAAAGC-AGTCCTCTCTCA 364
Query 363 C-CGTCTTTGGATACCAAACCATTTGATCAGTGACTTGATTACGCAATGGTGCCTTGTTA 421
| || ||| || ||| ||||||| ||||| ||| ||||||||||||||||| || ||||
Sbjct 365 CTTGTGTTT-GACACCCAACCATTCGATCAATGAGTTGATTACGCAATGGTGTCTCGTTA 423
Query 422 ACAAATATGATC-ATCA-A---A-AACCATCTGATGAATTAGTCGCTGAGCTGTTCACTA 475
|||||||||||| || | | |||||||||||||| ||||| |||| ||||||||
Sbjct 424 ACAAATATGATCGGCCAGACCCACAACCATCTGATGAAATAGTCATTGAGATGTTCACTG 483
Query 476 GTGACATAGAAGCATTGCTACAGCGGGTTTCCTCTTCCTCCTCTGTTGCAGATCAGATAG 535
||||||| ||| ||||||| || ||| |||||||| ||||||| ||||||||||||||||
Sbjct 484 GTGACATCGAACCATTGCTTCACCGGATTTCCTCTCCCTCCTCGGTTGCAGATCAGATAG 543
Query 536 AAGCTGCAAAAGAGCT-GCGTCACCAGACCAAGAAATTTC-CTAATGTTCGG-GTCTTCT 592
|||||||||||||||| || | ||||||| ||||||| | ||||| | | | |||||
Sbjct 544 AAGCTGCAAAAGAGCTTGCC-CTCCAGACCTCGAAATTTGTC-AATGT-CTGCGACTTCT 600
Query 593 TTGTCGCTGGAA-TCCATGATTCTATCACCCGTTTGCTCAGTCCGCTCTCTA-CTTTGGA 650
||||| |||| || ||||||| ||||| | ||||||| ||||||||||| ||||||
Sbjct 601 TTGTCAA-GGAACTCTATGATTCGATCACTAGGTTGCTCACTCCGCTCTCTAACTTTGG- 658
Query 651 CGAGG-CAGTAGACTCTAGTC-TCGAGCTTCAAGAGAATATTGTCACAGCTTTGTTCAAC 708
||| | | |||||||| | || | ||||||||||||||||| ||||| | ||||| |||
Sbjct 659 CGATGAC-GTAGACTCGAATCCT-GAGCTTCAAGAGAATATCCTCACATCATTGTTGAAC 716
Query 709 CTCTCGATTCTTGAGAGTAA-T-AAAACAGTGATTGCTGAAAA-CTGTCTAGTGATCCCT 765
|||||| | |||||| || | |||| | | ||||||||||| | ||| |||||||||
Sbjct 717 ATCTCGACTGTTGAGAA-AAGTCAAAAAA-TAATTGCTGAAAATCC-TCTTGTGATCCCT 773
Query 766 CTGCTTACAAAGTCTTTGAAGCAGGGG-ACAGATGAGACACGAAGAAACGCTGCTGCGAC 824
||||||||||||||||||| | ||||| |||||| | ||| || | | |||| |||||
Sbjct 774 CTGCTTACAAAGTCTTTGAGG-AGGGGGACAGATCAAACAAAAACAGTCTCTGCAGCGAC 832
Query 825 TTTATCATCACTTTCAGCCATTGATTCTAACAAGATCATTATTGGGAACTCGGAAGCGGT 884
|||| | |||||||||| |||||||||||||||||| || || |||||||||||||| |
Sbjct 833 TTTAACGTCACTTTCAGGCATTGATTCTAACAAGATTATCATCGGGAACTCGGAAGCACT 892
Query 885 AAAGGCTTTGATTGATCTTATCGAAGAG--GG-TGATTTGTTAGCTACCAAA-GAAGCCA 940
|||||| |||| ||||| |||| || || ||| || | ||| || | |||||
Sbjct 893 CAAGGCTCTGATAGATCTAATCGGGGACTCGGATGACTTATCAGCAAC-AGGTGAAGCTG 951
Query 941 -CTTCCACTGTCTTTAA-CCTCTGTAT-TG-T-ACT-GGAGAACAAGGGAAAGGTTG-TT 993
|| | |||| ||||| ||||||| | || | | | |||||||| || ||||| | ||
Sbjct 952 GCTACG-CTGT-TTTAAACCTCTGT-TCTGATGAATCGGAGAACATGGAAAAGGC-GATT 1007
Query 994 TCAGCGGGTTTGATTCAT-GCGGCAAC-CAAAAAGATCAAAGCAGGAAGCAATGTGGATG 1051
|||| ||||||||||| | || | | | |||||||||| ||||||||| ||||| || |
Sbjct 1008 TCAGAGGGTTTGATTC-TCGCAGTA-CTCAAAAAGATCCTAGCAGGAAGAAATGTAGA-G 1064
Query 1052 AGT-TGTTATCTCTCTTGGCATTGATATCTACACACAACCGGGCTGTTGAAGAAATGGAT 1110
| | || ||||| ||||| ||| ||| |||||| |||||| || | ||| |||| ||
Sbjct 1065 AATATGGTATCTATCTTGACATCGATTTCTACAAACAACCAGGTTAAGGAAAAAATAGAG 1124
Query 1111 AAACTAGGGTTTATCTATGATCTGTTCA-GTATCTTGAGGAAGC-CGAG-TAGCTTGCTG 1167
|||||||| || | | |||| | || | | ||||||||||| | | || | ||||| ||
Sbjct 1125 GAACTAGGGATTGTGTGTGATATCTTAAAG-ATCTTGAGGAA-CACAAGCT-GCTTGATG 1181
Query 1168 ACTGGTGAGAACGCTGTAGTGATCGTCTTCAACATGTATGACAGAAACAGAGACA-GGTC 1226
||||||||||||||| ||| | || ||||||| |||| ||| ||| |||||||| || |
Sbjct 1182 ACTGGTGAGAACGCTATAGAGGTCCTCTTCAAAATGTTTGATGGAATCAGAGACACGG-C 1240
Query 1227 CAGACTGA-AAGTGGTAGGAGAAGAGGAGAATCAACACGGGACATTTACGAAGCTTGCGA 1285
|| ||| || | | |||||||||| || | || |||||||||||||||||| |
Sbjct 1241 TAGGCTGGGAATTC-TCCAAGAAGAGGAGCTTCTATACAAGACATTTACGAAGCTTGC-A 1298
Query 1286 AG-CAAGGATCAGTTCGTGCAGCGAGAAAAGCACAAGGGATATTACAGTGGAT 1337
|| |||||||||| |||||| |||||||||||||||| ||| |||||||||||
Sbjct 1299 AGGCAAGGATCAGATCGTGCGGCGAGAAAAGCACAAGAGATTTTACAGTGGAT 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5