BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18330.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350938 jgi|Araly1|350938|fgenesh1_pg.C_scaffold_6001531 1504 0.0
Ahg893755 jgi|Araly1|893755|Al_scaffold_0006_1751 654 0.0
> Ahg350938 jgi|Araly1|350938|fgenesh1_pg.C_scaffold_6001531
Length=1416
Score = 1504 bits (814), Expect = 0.0
Identities = 1150/1309 (88%), Gaps = 35/1309 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGATTCGACGGCGGACGAGTCAACAAACGCTGATACTCTGTGGCGGGAGTTACAC 60
||||| |||||||||||||||||| |||||||||| ||||||||| ||||||| |||||
Sbjct 1 ATGGCGGATTCGACGGCGGACGAGGCAACAAACGCCGATACTCTGAGGCGGGATTTACAG 60
Query 61 AAGGTACTGCCGGAGATTTGGTACGACGGAGGAGGCAAAGATCACTGTGAGATTGATGAG 120
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 61 AAGGTACTGACGGAGATTTGGTACGACGGAGGAGGCAAAGATCGCGGTGAGATTGATGAG 120
Query 121 GCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGAATCC-G--GAATCTGAT 177
|||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 121 GCTATTAGAATCCTGACTTGTCTGAGGAAAATAGAATCGAAGAAGCCAGAAGAATCTGAT 180
Query 178 ATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTACACTCTCGAACAAGATCATGATC 237
||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 181 ATATCTCCGGTGGAAGTTCCAAAAGAGTTTATATGTAAACTCTCGAAGAGGATCATGATC 240
Query 238 GAACCTATGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGCTATATCCTAGAGTGGCTG 297
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 241 GAACCTGTGCTCATCGCTTCTGGCCAGACTTTTGAAAAGAGATATATCCTAGAGTGGTTG 300
Query 298 AAGCATGAACGTACATGCCCTAGAACCAAACAAGTCCTTTACCACCGTTTTATG-ATACC 356
|||||||||||||||||||| |||||||||||||| ||||||||||||||| || |||||
Sbjct 301 AAGCATGAACGTACATGCCCCAGAACCAAACAAGTTCTTTACCACCGTTTT-TGGATACC 359
Query 357 AAACCATTTGATCAACGAGGTTATTAAGGAATGGTGTCTAATTCACAACTTTGATCGGCC 416
|||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 360 AAACCATTCGATCAACGAGGTTATTATGCAATGGTGTCGAATTCACAACTTTGATCGGCC 419
Query 417 AAAAACATCAGATGAAG---TCATTGACCTGTTCACTGGTGACCTTGAATCATTGCTTCA 473
|||| |||| ||||||| ||||||||||||||||||||||| |||||||||| |||||
Sbjct 420 AAAACCATCTGATGAAGAAGTCATTGACCTGTTCACTGGTGACATTGAATCATTCCTTCA 479
Query 474 GCGTATTTCCTCTCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCT 533
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCGTATTACCTCTCCTTCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCG 539
Query 534 CAAGGCCAAGAGATTTTCCAGTGTTTGTGTCTACTTTGTCGCCAAAATCCCTGATTCCAT 593
| ||| |||||||| | ||| ||| ||| || |||||||||||||||||||||||| ||
Sbjct 540 CCAGGTCAAGAGATATGCCACTGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCGAT 599
Query 594 CACCAGGTTGCTCACTCCGCTCT---CTATTTCGG-AGGACTCGAATCCTGAGTTTCTAG 649
|||||||||||||||| | | | | || || || |||||||||||||| ||| ||
Sbjct 600 CACCAGGTTGCTCACT--GTTTTGGGCGATGA-GGTAG-ACTCGAATCCTGAGCTTCAAG 655
Query 650 AGAACATCGTCACAGCATTGCACAT-ATTCTCGACTTCTGAGAAGAATAAAACACTAG-T 707
|||| ||| ||||| ||||| || || ||||||| |||||||||||||||||| | |
Sbjct 656 AGAATATCATCACATCATTGTTCAACATG-TCGACTTTTGAGAAGAATAAAACACT-GCT 713
Query 708 TGCTGAAAACCCTCTTGTGCTTCCTCTGCTTGCAAAGTATATGAAGCAGGGGACAGTTCT 767
|||||| || |||| |||| | || |||||| |||||| | ||| | ||||||||| ||
Sbjct 714 TGCTGAGAATCCTCATGTGATCCCACTGCTTACAAAGTCTTTGAGGAAGGGGACAGATCA 773
Query 768 GACTCGAATACACTCTGCAGCGACTGTGAATTCACTTTCATACACTGATTCTAACAAGAT 827
|| || | |||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 774 AACAAAAAAAGTCTCTGCAGCGACTGTGTTTTCACTTTCACATACTGATTCTAACAAGAA 833
Query 828 TATCATCGGTAACTCGGAAGTACTCAAGGCTCTCATACATGTAATCGAAGAGGGTGATTC 887
|||||||| |||||||||| |||||||||||| ||| || || ||||||||||||||||
Sbjct 834 CATCATCGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAGTCGAAGAGGGTGATTC 893
Query 888 ATTAGCCACCAGTGAAGCCTTTTCCGCGCTTTCTAACCTCTGTCCAGTAAAGGAGATCAG 947
||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||
Sbjct 894 ATTAGCCACCAGTGAAGCCTTTTCCGCGCTTGCTAATCTCTGTTTAGTAAAGGAGATCAG 953
Query 948 TGAAAAGGCGGTTTCAGAGGGTTTGATTCGTGCGGCAATCAAAAAGATCAAAGCAGGAAG 1007
|||||||| ||||||| |||| ||||||||||||||| || ||||||||||||||||||
Sbjct 954 GGAAAAGGCAGTTTCAGCGGGTCTGATTCGTGCGGCAACCACAAAGATCAAAGCAGGAAG 1013
Query 1008 CAATGTATCTATGTTGTTATC-TCTCTTGGCATTTG-TTTCTACACAGAACCACCAAACT 1065
|||||| | |||||||||| | ||||||||| | |||||||||| |||| | ||
Sbjct 1014 CAATGTGGATGTGTTGTTATCGT-TCTTGGCATC-GATTTCTACACACAACCGG-A--CT 1068
Query 1066 ACCGAAGAAATGGATAATCTAGGGCTTATCTATGATCTGTTCAGTATCTTGAGGAACTCA 1125
| ||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1069 ATCGAAGAAATGGATAACCTAGGGTTTATATATGATCTGTTCAGTATCTTGAGGAACTCA 1128
Query 1126 AATAGCTTGGTGAATGATGAGAACGCTGTAGTCATCGTC-TACAACATTTGTAAAAGTTA 1184
|||||||| |||||||| ||||||||| || ||||||| | | |||||||||| | ||
Sbjct 1129 AATAGCTTCGTGAATGAAGAGAACGCTTTAACCATCGTCGTTTA-CATTTGTAAAGGATA 1187
Query 1185 CAAAGCCTTGC-AGAATGTGGTCCTAAGA-GAGGAGAAACGGGA-TGTGGTCCTAGAAGA 1241
|| || ||||| ||| |||||||| | || |||| || | |||| |||||||||||||||
Sbjct 1188 CAGAGGCTTGCGAGA-TGTGGTCC-AGGAAGAGGCGACA-GGGAATGTGGTCCTAGAAGA 1244
Query 1242 GGAGAATAAACACGGGACATTTACGAGGCTTGAGAACCAAGAAGCAGGT 1290
|||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 1245 GGAGAATAAACACGGGACATTTACGAAGCTTGCGAAGCAAGAAGCAGGT 1293
> Ahg893755 jgi|Araly1|893755|Al_scaffold_0006_1751
Length=1407
Score = 654 bits (354), Expect = 0.0
Identities = 989/1275 (78%), Gaps = 125/1275 (10%)
Strand=Plus/Plus
Query 1 ATGGCAGATTCGACGGCGGA--CGA-GTCAACAAACGCTGATACTCT--G--T--GGCGG 51
||||| |||||||||||||| ||| | ||||||||| |||||||| | | |||||
Sbjct 1 ATGGCGGATTCGACGGCGGACGCGACGGAAACAAACGCAGATACTCTGAGTCTGAGGCGG 60
Query 52 GAGTT-ACACAAGGTACTGCCGGAG-A-TT-T-GGTACGACGGAGGAGGCAAAGAT--C- 103
||||| | | ||||||||| ||||| | || | | |||||||||||| ||||||| |
Sbjct 61 GAGTTGA-AGAAGGTACTGACGGAGAATTTATACG-ACGACGGAGGAGTCAAAGATGGCG 118
Query 104 -----ACTGTG--A--GATTGATGAGGCTATTAGAATCCTGACTTGTCTGAGGAAAATAG 154
|||||| | |||||||||||| ||||||||||||| |||||| ||||| ||
Sbjct 119 TTGAGACTGTGAAATCGATTGATGAGGCGATTAGAATCCTGAATTGTCT---GAAAAGAG 175
Query 155 AATCGAAGAATC-----C-GGAATCTGATATATCTCCGGTGGAAGTTCCAAAAGAGTTTA 208
|||||||||| | | |||||||||||| ||||||||||||||||| |||||||| |
Sbjct 176 AATCGAAGAAGCGGAAGCGGGAATCTGATATTTCTCCGGTGGAAGTTCCGAAAGAGTTCA 235
Query 209 TA-TGTACACTCTCGAACAAGATCATGATCGAACCTATGCTCATCGCTTCTGGCCAGACT 267
| ||||||||||| || | |||||||||||| ||| || |||| ||||||| |||||
Sbjct 236 -AGTGTACACTCTCCAAGACGATCATGATCGATCCTTTGATCATTTCTTCTGGGCAGACG 294
Query 268 TTTGAAAAGAGCTATATC-CTAGAGTGGCTGAAGCATGAA-CGTACATG-CCCTAGAACC 324
| ||||||||| |||||| | ||| ||||| || ||| || |||||||| ||| | ||||
Sbjct 295 TATGAAAAGAGATATATCAC-AGAATGGCTCAACCAT-AACCGTACATGTCCC-AAAACC 351
Query 325 AAACAAGTCCTTTAC-CACCGT-TTTATGATACCAAACCATTTGATCAACGAGGTT-ATT 381
||| || |||| | | || || ||||| ||| |||||||||||||| || || |||
Sbjct 352 AAAGAACTCCTCT-CTCA-AGTCCGTATGACACCCAACCATTTGATCAATGA-CTTGATT 408
Query 382 AAGGAATGGTGTCTAATT--C-ACAACTTTGATCGGCC--AA--A-AA-CATC--A---- 426
| | |||||||||| || | |||| |||||||||| || | || |||| |
Sbjct 409 ACGCAATGGTGTCTTGTTAACAACAAAGTTGATCGGCCAAAACCACAACCATCTGATTTT 468
Query 427 G--AT-GAAGTCATTGACCTGTTCACTGGTGACCTTGAATCATTGCTTCAGCGTATTTCC 483
| || | ||| | ||| || ||||||||||| | ||| ||||||||||||| ||||||
Sbjct 469 GAAATAGTAGTAACTGAGATGGTCACTGGTGACATCGAACCATTGCTTCAGCGGATTTCC 528
Query 484 TCTCC-T--TCCTCGGTTGAAGATCAGACAGAAGCTGCAAAAGAGCTTGCCCT-CAAGGC 539
||||| | |||||||||| |||||||| ||||||||||||||||||||||| ||| |
Sbjct 529 TCTCCTTCCTCCTCGGTTGCAGATCAGATGGAAGCTGCAAAAGAGCTTGCCCTCCAA-AC 587
Query 540 CAAGAGATTT-TCCAGTGTTTGTGTCTACTTTGTCGCCAAAATCCCTGATTCCATCACCA 598
| || |||| | || ||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 588 CTCGAAATTTGT-CAATGTCCGTGACTTCTTTGTCGCCAAAATCCCTGATTCCATCACCA 646
Query 599 GGTTGCTCACTCCGCTCTCTATTT----CG--GA-G--GACTCGAATCCTGAGTTTCTAG 649
||||||||||||| |||||| ||| || || | ||||||||||| ||| ||| ||
Sbjct 647 GGTTGCTCACTCCTCTCTCTGTTTTGGGCGATGACGTAGACTCGAATCCCGAGCTTCAAG 706
Query 650 AGAACATCGTCACAGCATTG--CA-CATATTCTCGACTTCTGAGAAGAATAAAACACTAG 706
|||| || ||||| ||||| || ||| | || |||| |||| ||||||||||||||
Sbjct 707 AGAATATTATCACATCATTGTTCAACATGT-CT--ACTTTTGAGCAGAATAAAACACTAC 763
Query 707 TTGCTGAAAACCCTCTTGTGCTTCCTCTGCTTGCAAAGTATATGAAGCAGGGGACAGTTC 766
||||||||||||||| ||| | || ||||||||||||| | |||||||||||||||||
Sbjct 764 TTGCTGAAAACCCTCAAGTGATCCCACTGCTTGCAAAGTCTTTGAAGCAGGGGACAGTTG 823
Query 767 TGACTCGAATACACTCTGCAGCGACTGTGAAT-TCACTTTCATACACTGATTCTAACAAG 825
|||| |||| | || ||||||||||| | ||| |||||| || ||| |||||||||||||
Sbjct 824 TGACACGAAGAAACGCTGCAGCGACTTT-AATGTCACTTGCAGACATTGATTCTAACAAG 882
Query 826 ATTATCATCGGTAACTCGGAAGTACTCAAGGCTCTCATACATGTAATCGAAGAG--GG-T 882
|| ||||| || |||||||||| |||||||||||| ||| || ||||| || || |
Sbjct 883 ATCATCATAGGGAACTCGGAAGCACTCAAGGCTCTGATAGATCTAATCTTGGACTCGGAT 942
Query 883 GA-TTCATTAGCCACCAGTGAAGCCTTTTC-CGCGCTTTCTAA-CCTCTGTCCAG-TAAA 938
|| || || |||||||| |||||| | | ||| ||| ||| ||||||| | | ||
Sbjct 943 GACTT-ATCAGCCACCAATGAAGC-TGCTAACGCTATTT-TAAACCTCTGTTTTGATGAA 999
Query 939 --GGAGATCAGTGAAAAGGCGGTTTCAGA-GGGTTTGA-TTCGTGCGGCAATCAAAAAGA 994
||||| | | ||||||| | || | ||| ||| ||| ||| | || |||||| |
Sbjct 1000 TCGGAGAACTGCAAAAAGGCAATCTC-GTTGGGGTTGGCTTC-TGCCGTAACCAAAAATA 1057
Query 995 TCAAAGCAGGAAGCAATGT--ATCTATGTTGTTATCTCTCTTGGCATTTGTT-TCTACAC 1051
||||||||||||| ||||| || | ||||||| || |||||| ||| | | ||| |||
Sbjct 1058 TCAAAGCAGGAAGAAATGTGGATG-A-GTTGTTAGCTGTCTTGGTATT-GATCTCTCCAC 1114
Query 1052 A-GAACCACCAAACTACCGAAGAAATGGATAATCTAGGGCTTATCTATGATCTGTTCAGT 1110
| |||| | | || |||||||||||| ||||| |||||||||||||||| |||
Sbjct 1115 ACGAACGTGTTG--T-C-GAGGAAATGGATAATGTAGGGGTTATCTATGATCTGTTAAGT 1170
Query 1111 ATCTTGAGGAACTCAAATAGCTTGGTGAAT-GATGAGAACGCTGTAGTCATCGTCTACAA 1169
||||||||||| ||| | |||||||| | | |||||||| |||||| || ||| ||||
Sbjct 1171 ATCTTGAGGAAAACAAGTTCCTTGGTGACTTG-TGAGAACGTTGTAGTGATTGTCCACAA 1229
Query 1170 CAT-T-TGT-AAAAG 1181
||| | ||| |||||
Sbjct 1230 CATGTATGTTAAAAG 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5